Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->ATHB51                                       <--------HAHB4                                       <---------ICU4                                      <---------YAB1                                      --------->ICU4                                --------->GLK1(1)                            --------->ANAC58--------->bZIP60(1)                            --------->ANAC58--------->TGA2(1)                         <---------ATHB12   <---------bZIP60(1)           <----------DOF2  <---------TOE2(3)                  <---------YAB1        <----------DOF2      --------->MYB59 <---------AHL20(2)  <-----------GT1   <-------TEIL       --------->TOE2(3)    - ------->YAB1     --------->ICU4<---------GLK1(1)    <---------WOX13(1)  <-----------GT1      <------   atgagaattgggtctttgtaatttttaatcaaggaaatccattattacatcactaattgaaattcatgtttgtatatacagcctaaacttttgtatatac  15849400                                                                                         --------->ANAC58                                                                                         --------->ANAC46                      --------->AHL20(2)                                                 --------->ANAC58               <----------DOF2                                            <---------ARR11(3)            ------->TEIL               ----------->GT1                --------->YAB1    ------->GAMYB      <----------DOF2 <---------AHL20(2)<<<<<<<<<MYB98           --------->AHL20(2)    <---------ALFIN1 -------->TOE2(3)<---------AHL20(2)   ----------->GT1         <---------ICU4      <-----------GT1 -----GT1  <---------CCA1(2)   <----------DOF2             --------->YAB1 --------->GLK1(2)   agcctaaacttttgtatcttttatttaaaaacactttaatatgttaaaatccaatatagtatcaaaattatatcaaaatctaataaacaacacaccagtt  15849500              <---------YAB1             <---------AHL20(2)                                                           ------->GAMYB             --------->AHL20(2)                                                         -------->P --            --------->AHL20(2)              <------MYB83  --------->ANAC55(2)        <---------MYB52(2)            --------->YAB1                  <------MYB46(1)                   --------->YAB1       <-         --------->WOX13(1)       --------->AHL20(2) <---------ETT(2)         <---------ICU4    <----   <---------DAG2         ----------->GT1   <---------MYB46(3)         <-----------GT1--------->AtMYB61   <----------DOF2 --------->MYB52(1)     <---------MYB52(1) --------->ATHB12<---------ATHB12   -----   ttcaactttatcaattaaaattaacagatggtgattttaaatcagttggtttccatcgacacatgatttctagttaccaataatcccactaaccccatta  15849600             --------->RVE1(1)         <---------AHL20(2)         --------->AHL20(2)     --------->AHL20(2)    <---------AHL20(2)    --------->AHL20(2)                                --------->ATHB12  <----------DOF2                                     <---------ICU4                          ------>NtERF2 ------->ARR11(3)                                     -------->HAHB4                        --------- --------ARR11(3)                                    --------->ICU4                         <-------- -----AHL20(2)<---------ARR11(3)                     <---------YAB1 <---------ANAC58     --------->RAP2.6(3) ---->AHL20(2)--------->GLK1(2)      <---------TOE2(3)--------->YAB1<---------ANAC58    --------->MYB52(1)   aaatctttaaattaaaaatctgaacaaaattatctaatttagatttgttttcaaaatgattacaatgttttcttgttttgaacggagacttatcggctcc  15849700                                                                                    *TSS                                                                       --------->ARR14(2)                                                      --------->ARR14(2)         -------->P                                           --------->YAB1              <-----------ARR10                                           --------->AHL20(2)          --------->ARR11(3)                                          <---------YAB1               <---------ARR11(3)                                       <---------AHL20(2)             <---------CCA1(2)                                       --------->AHL20(2)           ------>MYB46(1)--------->TOE2(3)          <---------YAB1              --------->AHL20(1)            ------>MYB83 ------>MYB83        --------->YAB1                --------->AHL20(2)          <---------MYB59------>MYB46(1)     --------->YAB1                   <---------AHL20(2)     --------->ALFIN1   <---------ALFIN1 --------->LBD16                --------->YAB1--------->AHL20(2)------->TEIL   <---------ALFIN1 >At4g35610       --------->TOE2(3)   <---------AHL20(1)   <---------ANAC46  --------->HSFB2a(2) -At4g35610--------->YAB1      <---------ATHB12<---------AHL20(2) <---------MYB111(1)   ctccgtaaaataatcatacacattaatccactaatcaaaatttaattataaaatcgaatcgccgtgtacctaatatcttccccaacctttgctctctctc  15849800                                                   <----------DOF2                                 --                                    --------->WOX13(1)                                            ---                         <<<<<<<<<TBF1   --------->At4g35610                                      <--                     ------>ZmHOX2a(1) <---------ICU4                                             <--                     =====================HOX2a_HOX2a                                 <-----------GT1              <---------CCA1(2)    ------>ZmHOX2a(2)                    ------>ZmHOX2a(1)   <--------   tctctccatctccctcatacctccttcttcttcttgatccatcatctctctctctttctctcttctctctgttcctagtccatcgatttaacctctttca  15849900                                                                            <---------ARR11(3)     ------>ZmHOX2a(1)                                             <---------GLK1(2) <-----------GT1                                              <---------ARR14(2)      <---------AHL20(2) ------->GLK1(2)                                             <---------GLK1(1)    <----------DOF2 ------>ARR14(2)                                             --------->GLK1(1)   <------------------- -------GLK1(2)  <---------DAG2                           <---------TOE1(3) <-----------ARR10 -------ARR14(2) <----------DOF2      <----------DOF2     <---------TOE2(3) --------->ARR11(3)   ---- --DOF2    <----------DOF2    --------->ZAT14         <----------DOF2      <---------GLK1(2) <-------   gattctccttcttctttgactttttttgacaccgtagtctctttccccttccatcgatttagggtttccgattttcaaaatctcctttttatttgtttcc  15850000                                                              <---------ATHB12                                                            --------->YAB1                                   --------->ALFIN1<---------GLK1(1)                                  <---------LBD16  --------->GLK1(1)                                 ----------->RAV1(2)------>ZmHOX2a(2)  ---------->DOF2                      --------->ARR14(2)           <------ZmHOX2a(2)<---------ANAC58           <-----                  <---------HSFB2a(2)             --------->ARR14(2)<---------ANAC58        <--------      <---------ZAT18 <---------ARR14(2)       ------>ZmHOX2a(2) <---------CCA1(2)          --------- -----ANAC81      --------->HSFB2a(2)        <---------ARR14(2)<---------ICU4      <---------YAB1 -->ZmHOX2a(1)--------->ANAC46 <---------WRKY18(1)<---------ARR14(2)<---------ANAC46       <--------- ----GT1 <---------GLK1(1)  <---------ICU4   --------->ARR14(2)--------->YAB1   --------->GLK1(2)  <-   tctccttgtgcaattcccgtctcgaatccatcttgacctgggggtctgatccgatctccctctaatcatatcgtgaagcgagattatgtttttgtgctgc  15850100                                                                           <---------At4g35610                                                                           --------->At4g35610                                                                           ------>NtERF2                                                                          --------->DEAR3(1)                                                                         --------->RAP2.3(1)                                                                         <------NtERF2                                                                         --------->ATERF1(1)                                                                         --------->DEAR4(2)                                                                        ------>NtERF2                                                                        <---------At4g35610                                                                        <---------ATERF1(1)                                                                        <---------RAP2.3(1)                                                                       <---------ATERF1(2)                                               --------->ANAC58        --------->ANAC46                                               --------->ANAC58        --------->ATERF1(2)                                          <---------------AtSPL8       --------->DEAR3(1)                                          --------------->AtSPL8      --------->RAP2.3(1)                                          --------->MYB111(1)         <---------RAP2.6(2)                                          <---------MYB46(3)          --------->ATERF1(1)                           <---------ATHB12<------MYB46(1)           <---------ATERF1(1)                         --------->WOX13(1)<------MYB83           <-------GAMYB     --------------------->WRI1          <---------ANAC46        --------->MYB52(2)     <----------DOF2   <---------YAB1  <---------MYB46(3)        <---------MYB46(3) ----ZAT18        <------ZmHOX2a(1)   <---------AtMYB61         <-------TEIL -At4g35610      <---------YAB1    --------->ICU4            --------->MYB55(2) >At4g35610==============HOX2a_HOX2a--------->YAB1           <---------MYB46(3)          ---------->DOF2 --RAV1(1) ------>ZmHOX2a(2)--------->YAB1--------->MYB55(2)--------->ALFIN1           ------>ZmHOX2a(1) ---------DOF2  <---------TOE2(3)  <---------YAB1        <---------TOE2(3)--------->RAP2.3(2)   gcttctgctttgatcgcttaggattatcaatcgtgttatgatggtgggtactcaaaatttaggtggttcgttgccgccgctgaattctcctaaaagctat  15850200                                                --------->YAB1                                        --------->ARR14(2)                                        <---------ARR14(2)          ----------->GT1                      <---------ANAC58 <------NtERF2       --------->ZAT2                      <---------ANAC58<---------MYB46(3)   <---------At4g35610                     --------->ZAT2  <---------ANAC46      <---------ZAT2                     <---------ZAT2 <---------At4g35610    --------->At4g35610  ---------->ID1           --------->At4g35610      <---------LBD16    --------->ALFIN1     <----------DOF2          --------->RAP2.6(2)     <---------DEAR3(1) <---------ANAC46  ---------->DOF2   ggaattacgaagccgctctctcttgctgggccttcttcggcggatattaagcgtaatgtggagctggagaaggtaaagctttgtttttttgtttatacaa  15850300  Previous    Next  AGI:  At4g32850.1    Description:  nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding. similar to putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD54151.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45810.1); similar to putative polynucleotide adenylyltransferase [Oryza sativa (indica cultivar-group)] (GB:AAW68015.1); contains InterPro domain Nucleotidyltransferase; (InterPro:IPR002934); contains InterPro domain Poly(A) polymerase (InterPro:IPR014492); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IP Range:  from: 15849784    to: 15854464    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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