Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->ZAT6                                           <----------DOF2                       <---------ATHB12                                          <---------DAG2                       --------->WOX13(1)                                          --------->TOE2(3)       --------->ANAC58     ----------->GT1   ----------->RAV1(1)                  -------->P   <---------ZAT14         <---------ATHB12  --------->REM1(1)                     ------>MYB83 --------->ZAT14 <----------DOF2---------->DOF2 ->ANAC58       ------->TEIL            ------>MYB46(1)           --------->ANAC58--------->YAB1 ->ANAC58  --------->CCA1(2)           <---------ALFIN1 --------->ANAC46   --------->WOX13(1)  <-----   aactacaacagtgatatgaagctaaactctcttcttcatcccaaccttttagcactatactcaactacaagctttctcaatcaatcaaaaggaaacaaat  15557700                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                              -------                                                                                              <------                                                                                       --------->ANAC58                                                                                       --------->ANAC46                                                                                       --------->ANAC58                  <---------ARR14(2)                                            --------->ANAC55(1)   ----------->GT1--------->ARR14(2)          --------->At4g35610               <---------ANAC55(2)  <---------TOE2(3)                --------->ANAC46          <---------AHL20(2) --------->ANAC46<----  <---------TOE1(3)--------->CCA1(2)          <---------At4g35610         --------->AHL20(2)  ------- ----GLK1(2)--------->ETT(2)     --------->ANAC46            --------->AHL20(2) --------->ANAC55(2)   tcttaaggttaatttcgacagatatgtgtctacttacacaacaatctcatctcaaatttttgtttaaatgaaacgattaaacacataacacaccaaaatc  15557800                                                               ----------->GT1                                                              ----------->GT1    ----------->GT1                                        --------->At4g35610 ------>LBD16                                              <---------At4g35610 ----->ANAC58              --------->LBD16               <-----------RAV1(2) ----->ANAC46              ------>ZmHOX2a(1)     <---------At4g35610 ----->ANAC58            <---------LBD16         --------->At4g35610  <---------ICU4                - -->ARR14(2) --------->AHL20(2)       ------>NtERF2   <---------ZAT2  --------->YAB1         -------- ---ARR14(2) <---------AHL20(2)       --------->LBD16 <---------At4g35610            --------->ANAC58 -----LBD16--------->AHL20(2)        <---------LBD16  --------->At4g35610            --------->ANAC46 -->GLK1(2)<---------AHL20(2)       <---------LBD16   --------->ZAT2 <---------ATHB12--------->ANAC58   cgcaaatggatatatatatatatcatttcctgaaaatttccggcgaagcgaagcagagctcagatgggtaaatcatgaagtcgaaagacgaaactaaacg  15557900                                                                                               ------                                                                                               <-----                                               --------->MYB46(3)                             <------NtERF2                                               <---------ATHB12                 --------->ANAC46 ----                                              --------->ANAC58                --------->MYB52(1)<----                          <--------ATHB1      --------->ANAC58         <---------ARR14(2)    --------             --------->HSFB2a(2)             --------->WOX13(1)     --------->ANAC55(2)     <------NtERF2      --------->AHL20(2)  --------->YAB1  --------->ANAC58         <---------LBD16 ---------->DOF2---      <---------AHL20(1) <---------ATHB12 --------->ANAC46        --------->MYB52(1)       <---------LBD16      <---------AHL20(2) <---------ATHB51 --------->ANAC58       --------->TOE2(2) ================== -------->YAB1     --------->WOX13(1)---------->DOF2     ----------->GT1--------->GLK1(1)  ------>NtERF2 ->MYB52(1)  <---------HSFB2a(2)  --------->AtMYB61    ----------->GT1 --------->ARR14(2) <---------ANAC46   aatcacaaaaaatttctcgatctatcaataataccaccaaaaagacgcaatcaacgagagtgaaaaacatacggatttgtaaacggaaagaggcgcggag  15558000         <---------DEAR3(1)         --------->DEAR3(1)      <---------ANAC46  <-----------HVH21 --------->bZIP60(2) ===================================bZIP_DOF --------->O2 <---------TGA1a --------->TGA1a                  --------->ALFIN1 <---------bZIP60(2)             --------->LBD16 <---------O2                    <-----------HVH21 --------->bZIP60(1)            <---------O2                                  ------>ZmHOX2a(2) <---------bZIP60(1)            <---------ANAC46                            --------->ARR11(3) <---------DEAR3(1)             <---------ANAC58              --------->ARR14(2) --->ARR14(2)                   <---------ANAC58              <---------ARR14(2) ----ARR14(2)                   --------->O2                  <---------GLK1(1)      <---------ANAC46 ----->ATERF1(1)                <---------TGA1a               --------->GLK1(1)    ------>ZmHOX2a(1) -----ATERF1(1)          ---------->DOF2               --------->At4g35610  <---------ARR11(3) ->LBD16<------NtERF2    =================bZIP_DOF     <---------At4g35610 --------->YAB1 -------->HVH21------->TEIL    <-----------------------TaNAC69(2)    <---------At4g35610 ==========bZIP_DOF  ------>ZmHOX2a(2) <------NtERF2 <-----------RAV1(2)  <---------ATHB12    <------   acgacgtcgcgtcgacgaatcgatcggaaaagagccgtggcagccatggactgaatcagatgagaattctctgctaatgatcttcctgcgtaaattcgag  15558100                                                                                   ----------->GT1                                                                                   <---------ANAC58                         ------>ZmHOX2a(2)                        --------->AHL20(2)                        <------ZmHOX2a(2)                         --------->AHL20(1)                        --------->GLK1(1)                         <---------AHL20(1)                       <---------ARR14(2)     --------->AHL20(2)  <---------AHL20(2)                       <---------ARR11(3)     <---------AHL20(2) <---------AHL20(2)<---------ANAC46            ---------->DOF2     <---------AHL20(2)           <---------AHL20(2)    <---------ANAC58          --------->MYB46(3)   *TSS           --------->ATHB51   --------->AHL20(2)<---------ANAC55(2)        ----------->RAV1(1)    --------->AHL20(2)      --------->AHL20(2)   --------->At5g28300    --------->ANAC58   --------->ARR11(3)     <---------ICU4 --------->AHL20(2)    --------->ANAC55(2)    --------->ANAC58   --------->ARR14(2)    --------->ICU4 --------->AHL20(2) <------------CBF ---HSFB2a(2)    --------->CCA1(2)        --------->ICU4--------->ICU4     ----------->GT1<----------   agaagtaagccaacaaaagaaatgggatctcgattaaatcagccctaattatttcataaaaattaaaataaattagagggtaattgcgtaaattacaaat  15558200                    <-------MYC2                   --------->ANAC58                   --------->ANAC58                                       <---------ANAC58                 <---------ALFIN1                                         <---------ANAC58                --------->LBD16                                        <---------MYB52(1)               --------->ANAC46                                        <-----------HVH21       ------              <---------LBD16 --------->YAB1                  <-----------ARR10             ---------      ---------->DOF2    ------------>CBF                  <---------ANAC58                 <--------    --------->ANAC58<-------MYC3             ----------->RAV1(2)    <---------LBD16    --------->ANAC58    --------->ANAC58------->MYC3  <---------YAB1           <---------ANAC58        --------->ANAC46  --------->MYB52(1)------->MYC2  --------->ICU4          <---------LBD16<---------MYB46(3) --------- -GT1------->GAMYB<---------TOE1(2)--------->ATHB12   <----------DOF2 --------->LBD16  --------->ANAC58   tccccaacgaaagttatccgcacgtttcacaatgagattattgaaacctctggctcctttagcgggtctctccggtgagtgctacaaacaagtcaagtga  15558300                                                            <---------PCF2                                                           <---------DEAR3(2)                                                           <------MYB83                                                           <------MYB46(1)                                                          <---------MYB46(3)                                                         <---------ANAC46                                                       <---------MYB46(3)                       -----                                    --------->LBD16    --------->MYB55(2)                       <----                                   --------->ANAC55(2)<---------AtMYB61                         <----                     <---------MYB46(3)          <---------ANAC58                           <--------                <---------ZAT14    <---------ANAC55(1)--------->ALFIN1                     --------->ANAC58         <---------ARR14(2)        <---------ANAC46<---------AtMYB61                       --------->ANAC58     <---------LBD16<---------AtMYB61            <---------ANAC58                <---------ATHB12 ----->GT1      --------->ZAT14    <---------ANAC58<------NtERF2                ------>MYB83--------- -->GT1  --------->ARR14(2)        <---------ANAC55(2)<---------DEAR3(1)        ------>MYB46(1) ----- -ANAC55(2) <---------ALFIN1       <---------ANAC58--------->ALFIN1           <---------MYB59   ----- >ANAC55(2)--------->MYB46(3) <---------MYB46(3) <---------ANAC46       --------->YAB1  --------->At4g35610   taaaaacttcggaaccactgtagtggttgtagttgttccgtataagttttggcgtggtggtgggttccaaagaataagaaccaaacaatgagctagccag  15558400          <---------DEAR3(2)          <------MYB83        <---------MYB52(1)       <-------GAMYB      <---------MYB46(3)     <------NtERF2   --------->bZIP60(1)   <---------ANAC46                                                                             -----   <---------bZIP60(1)                                                                          <---- ---->At4g35610                                                                                ------ -----At4g35610                                 <xxxxxxxxxxxxxxxxxsmallRNA(le3)               ------- -----ZAT2<---------MYB46(3)         <---------At4g35610                                    --------- -STY1(2)<---------TOE1(2)           --------->HSFC1(2)                                 ---------->DOF2 >STY1(2)<---------TOE2(2)           <---------HSFC1(2)    ----------->HVH21         --------->TOE2(3) ---->ZAT2<------MYB46(1)          <--------P--------->HSFB2a(2)     <----------DOF2 --------->TOE1(3) ------>RAV1(2)               <---------ANAC46<---------LBD16     <----------DOF2   --------->At4g35610   ctgtgtcgtcgttggttcttacatcgctagttttgtggtagcttcttctcgggctagttttgtgaccgcttctttgaaaacttataagcttaaagaaaga  15558500                                   ----------->GT1 ---->ARR11(3)                    --------->DAG2                               --------->ANAC55(2) -----ARR11(3)            ---------->DOF2                            ------->GAMYB               <--- --->YAB1          --------->AHL20(2)<----------ID1                  --------->YAB1              ---- ---->GT1    --------->YAB1      ---------->DOF2                    --------->MYB46(3) <---------TOE2(3) ->DOF2     <---------ATHB12----------->GT1                    <----------DOF2 <---------ANAC55(2)   taatatccaatccaatgaaaataaactataaagtataaagtgacaaaattttgaaaacttcttctctttaaccatcacattacataacaaaggtttttta  15558600  Previous    Next  AGI:  At4g32210.1    Description:  SDH3-2. similar to SDH3-1 (succinate dehydrogenase 3-1) [Arabidopsis thaliana] (TAIR:AT5G09600.1); similar to unknown [Populus trichocarpa] (GB:ABK94739.1); contains InterPro domain Succinate dehydrogenase, cytochrome b subunit; (InterPro:IPR000701) Range:  from: 15556421    to: 15558131    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g32208.1    Description:  similar to mtHSC70-2 (HEAT SHOCK PROTEIN 70), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G09590.1); similar to Heat shock 70 kDa protein, mitochondrial precursor (GB:Q01899); contains InterPro domain Heat shock protein 70 (InterPro:IPR013126) Range:  from: 15558533    to: 15559656    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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