Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       --------->YAB1                                    <---------ATHB12                              --------->ANAC58                              --------->ANAC58                          <---------At5g28300                         <-----------GT1          ------>ZmHOX2a(1) --------->ZAT6                 <---------------AtSPL8    <---------ICU4    <---------ARR11(3)             --------->YAB1 --->ANAC46           --------->ARR14(2)            <-------TEIL                   --------->ANAC58 --->ANAC58           <---------ARR14(2)       --------->YAB1                      --------->ANAC58 --->ANAC58           --------->ARR11(3)      <---------ATHB12               --------->ALFIN1  ------   aactaatttttcctagagaatgaagatttaccactcaaatcaaaacccatcatattcataacgagtacaaaatcacacggtggagaagcaaatagaatca  15136200                                                                           --------->ANAC46                                                                      --------->ARR11(3)                                                                      --------->GLK1(2)                                                                      <-----------ARR10                                                                      <---------ARR11(3)                                                                      <---------ARR14(2)                                                                --------->TOE2(2)               <---------------AGL15                            --------->TOE1(2)             --------->At4g35610                               ----------->RAV1(2)             <---------At4g35610                              --------->GLK1(2)        <---------YAB1                                        ------->TEIL --------->REM1(1)       --   --------->MYB46(3)       ----------->HVH21                --------->ARR14(2)               -------  ------>MYB83 --------------->AGL15                         <---------ARR14(2)               <------  ------>MYB46(1)         ----------->GT1       ----------->RAV1(1)   --------->ARR14(2)     ------>MYB83 --------->ANAC46        --------->DAG2         ===========================RAV               ------>MYB46(1) --->YAB1 --------->RAP2.6(3)           <-----------HVH21    --------->ARR11(3)           --------->ANAC46   taccaacaacatgactgctccattgagaaggtgacaagactaagtcagagccacagactggaagaacctgagtatctacaccatttccttccaccaagct  15136300                  <-------PIF5                  ------->PIF5                 ----------->RAV1(2)               <---------ALFIN1              --------->MYB46(3)                                                                  <--              =================HOX2a_HOX2a                                                        <--              ------>ZmHOX2a(2)                                                                   <--             <------ZmHOX2a(2)                                                                    ---             ==================HOX2a_HOX2a                                                        <--            --------->ARR14(2)                                                                    <--           <------ZmHOX2a(1)                             <---------AHL20(2)                   -------          --------->HSFB2a(1)                           --------->AHL20(2)                    -------          <---------HSFB2a(1)                       <---------ARR11(3)                    --------->ANAC46      --------->ANAC46                          ---------->DOF2                           --------->ANAC58   <---------ARR14(2)                          <---------WRKY12                           --------->ANAC58   --------->ARR14(2)   <------ZmHOX2a(1)    <-----------HVH21                           ============ ---->NtERF2<---------ARR14(2)        --------->ZAT14--------->CCA1(2)                   ------->GAMYB -->ZAT2  --------->HSFC1(2)       ----------->GT1  --------->ARR11(3)               --------->MYB46(3) ---ZAT2  <---------HSFC1(2)  ---------->DOF2--------->LBD16                    ----------->GT1 <----   cggcctatacgaaggatccacctgcaggaagagaaagaagtaaactccgtcaaagatataaaatttcaaatcccaattgatacagtaacaacaggcaagg  15136400                                                                    --------->ICU4                                                            <---------DEAR3(2) -------ANAC46                                             --------->ATERF1(2) -------ANAC58                                             <---------ATERF1(2) -------O2                                                 <---------DEAR3(1) ------>TGA1a                                            --------->MYB52(1) -------TGA1a                                           ------->GAMYB -------ANAC58                                          --------->DEAR3(1) -->ANAC58               <---------MYB52(2)            --------->DEAR3(2) -->ANAC58 <------ZmHOX2a(1)                           --------->MYB46(3) =======MYC_MYB     ----------->GT1                  --------->ARR14(2) --ZmHOX2a(1)  >>>>>>>>>TBF1       <------ZmHOX2a(1) <---------ARR14(2)                ----------->GT1   acgtgagagtcgaggaagaagaaggaaacaaaccagaggagcgagaacatagtcaaaaccgccggtggaaatgttgaagttgagaagatgagtaacatcg  15136500                         <---------ARR14(2)                         --------->ARR14(2)                    ------>NtERF2                    <------NtERF2                    --------->LBD16                   --------->DEAR3(1)                   --------->RAP2.3(2)                   ----------->RAV1(1)                  --------->RAP2.3(1)                  <---------LBD16                 ------->GAMYB                       ------>ZmHOX2a(1)                --------->ANAC46        <---------At4g35610                                   -------                --------->DEAR3(1)      ------>ZmHOX2a(1)             <---------CCA1(2)       -------    <---------GLK1(1)    --------->GLK1(2)        ------>ZmHOX2a(1)<------NtERF2            ---------    --------->GLK1(1)<------NtERF2      --------->At4g35610     --------->SPL7              <--------   ttggagaaatcagtctcaacgccgcagtatctggactcggtcctctcccatcctcctctctctccgagcggcatctcttcttctctctctattgagctca  15136600                                              --------->ZAT18                                              <---------SPL7                                              ----------->HVH21                                             *TSS         --------->ANAC58                                            <---------At4g35610                                            --------->At4g35610                                   <----------DOF2        --------->ANAC58    --------->ALFIN1         <---------ARR14(2) --------->SPL7 -->ZAT18                    ------->TEIL<XXXXXXXXXXXXXXXXXXXXMIR858            <---------AHL20(2) ---->HVH21                  --------->ARR14(2)------>NtERF2           >>>>>>>>>WRKY18<-----------GT1 >At4g35610       <---------At4g35610   <---------HSFB2a(2)           ----------->HVH21 -At4g35610       --------->At4g35610   --------->HSFB2a(2) ---------->DOF2 ----------->GT1  ------>ZmHOX2a(2)   cagggagtgaaggaatttgcagatggaagtgaatcttcttttctcgagcggacgacgaaaacgaaagggtttttgacagggtttaattttactgatctgt  15136700                                                                        --------->ATHB12                                                                       <---------ATHB12                                                                       --------->MYB46(3)                                                                      -------->P                                                                      ------>MYB46(1)                               --------->CCA1(2)                      ------>MYB83                             --------->YAB1                     <---------ZAT2               <-------                        <----------DOF2                         --------->ZAT2             --------->ATHB12                        <---------DAG2     ------>MYB46(1)     --------->ANAC58           <---------YAB1           <----------DOF2  <---------YAB1 ------>MYB83        --------->ANAC58        ----------->GT1   agtttatatcgggcttttctaatgggctttatgatatgctatacctagcccatttatgccatcccaagctccaaccattggctctaaacatgttaattgg  15136800                                                     --------->MYB52(1)           --------->TOE2(3)                                                     ------>NtERF2             <---------GLK1(2)                                                    --------->DEAR3(1)      --------->ANAC55(2)                     <---------ANAC46               <---------ALFIN1      <---------AHL20(2)       ---------->DOF2   <---------YAB1            --------->ATERF1(1)    <-----------GT1----------->GT1 --WOX13(1)       <---------TOE1(3)                --------->MYB46(3)  <---------ICU4  ---------->DOF2   ttttgacataaaagagtcttatggtttgtgatagtagtactagactactagtagccacccgaattcaagtgaatatttacatattcttagaaagaaaaat  15136900                                      --------->YAB1                                      <---------ICU4                                     <---------ATHB12                   <---------YAB1         ------                                     <---------ATHB51               <---------GLK1(2)       <--------                                   --------->WOX13(1)           ---------->DOF2        <---------At4g35610                               <---------CCA1(2)        --------->CCA1(2)           <-------TEIL ----                        <----------DOF2                <---------ARR11(3)          --------->CCA1(2)                       <---------ANAC58                --------->ARR11(3)         --------->ARR14(2)       <---------ANAC46<---------ANAC58  <-----------HVH21 <-----------GT1        <---------ARR14(2)   gttgatatagtgtgtgatttgaagtgctttctcatatcaattatgtcaaatgtaagagatataaccaaaagattatttttcacagatacagcttatgaat  15137000                                                                                           ------>ZmHOX2a(1)                                                                                          <---------MYB59                                                 --------->AHL20(2)                      ============                                                --------->AHL20(2)                       ------------                                               <---------YAB1                          <-----------GT1                                              --------->TOE2(3)                 -------->ATHB1                                             -------->ATHB1                     <---------ICU4                                             <---------ICU4                    --------->AHL20(2)                                             --------->ATHB12                  <---------ATHB51                  --------->CCA1(2)          <--------HAHB4                    --------->ICU4             --------->ZAT14                 --------->YAB1                    <---------AHL20(2) ->TEIL      <---------ZAT14                --------->ICU4         ------->GAMYB--------->YAB1<------ -YAB1       <-------TEIL  --------->YAB1   <---------ATHB12    --------->MYB52(1)<---------YAB1 ----->YAB1 --------->ALFIN1              --------->WOX13(1)    ----------->RAV1(1) <---------AHL20(2)   cacaatgcatcaaggtgcagagatgggtttcataacattctagccaatcattaaaaaaaaaaaaaacaacagaagaaacaaattattattttcctaatca  15137100  Previous    Next  AGI:  At4g31120.1    Description:  ATPRMT5/PRMT5/SKB1 (SHK1 BINDING PROTEIN 1); protein methyltransferase. Identical to Protein arginine N-methyltransferase 5 (PMRT5) [Arabidopsis Thaliana] (GB:Q8GWT4;GB:Q9M090); similar to unnamed protein product [Vitis vinifera] (GB:CAO43995.1); similar to Protein arginine N-methyltransferase 5 (Shk1 kinase-binding protein 1 homolog) (GB:A2X0Q3); similar to protein arginine N-methyltransferase [Physcomitrella patens subsp. patens] (GB:EDQ61677.1); contains InterPro domain Skb1 methyltransferase; (InterPro:IPR007857) Range:  from: 15132017    to: 15136645    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g31130.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN64246.1); contains InterPro domain Protein of unknown function DUF1218 (InterPro:IPR009606) Range:  from: 15136941    to: 15138846    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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