Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <---------ANAC58                --------->LBD16           <---------ANAC58               --------->ANAC46           <---------ANAC55(2)               --------->LBD16            --------->ANAC55(2)         ----------->HVH21              <-----------GT1                 --------->DAG2        <---------WOX13(1)              --------->AHL20(2)             ---------->DOF2     <---------YAB1         --------->ZAT14    <----------DOF2  ------->GAMYB <---------ANAC46   <---------ICU4           --------->ZAT18    <---------------AGL15--------->ANAC58   --------->YAB1 ---------->DOF2----------->GT1              --------->At4g35610  <------ZmHOX2a(2)         <---------ZAT14    <---------DAG2--------->MYB52(1)          <---------ANAC58 <---------ARR11(3)        <<<<<<<<<<<<<<<<<LFY--------------->AGL15--------->ANAC58     <---------ANAC58 --------->ARR11(3) --------->ICU4--------->At5g28300   <------ZmHOX2a(1)  --------->ALFIN1      ----   ttagatcatgactgaccccgaaaagattagtacagtggtaaattacttactttatagaggaaacaactgcaagaaaagtggagtttgttttgcgttcttc  15054500                             --------->ANAC46                             <---------ANAC55(2)                             --------->ANAC55(2)                            --------------->AtSPL8                            --------------->AtSPL3               ----------->GT1                            <-------TEIL   <---------YAB1 ----------->GT1                            <---------------AtSPL3        --------->ANAC46                          --------->ARR14(2)              --------->ANAC58             --------->MYB52(1)                 <------ZmHOX2a(1)    <---------TOE2(3)--------->At4g35610       ----------->GT1                <----------ID1    --------->TOE2(3)    --------->ZAT2  <---------AHL20(1)               ----------->GT1    <----------DOF2      <---------ZAT2  <---------ARR11(3)--------->ANAC58           ---------->DOF2<---------ARR14(2)         ---------->CDC5   --------->AHL20(1)--------->ANAC58 ----->HSFB2a(2)----------->GT1 ------->TEIL--------->YAB1--------->ANAC58  <---------AHL20(2)   <---   caaaatagtgactgaaagaggaaaaacatatacgtactttaatgtatgataagactcagcacgaaaatagcaaaatatttcaatggaaaaaacgaaattg  15054600                                                           <---------GLK1(1)                                                           --------->CCA1(2)                                                           --------->GLK1(1)                                          <---------At4g35610                                          --------->At4g35610 --------->TOE2(3)                                   <---------ALFIN1       --------->ARR14(2)--------->ARR11(3)                                  <------NtERF2           <---------ARR14(2)<---------ARR11(3)                                --------->PCF5           <------ZmHOX2a(1) --------->GLK1(1) ------ANAC46                   --------->PCF2       ---------->DOF2      <---------ARR11(3)<--------   tttgtattcttcattttcttcagggcttctaatggccccatttcagcatacaaaaaaaaggatatgttaatgggatgatatctatctatatgggctttag  15054700                                                                                 --------->MYB52(1)               --------->ANAC58                                                 ----------->HVH21               --------->ANAC46                                               ----------->RAV1(2)               --------->ANAC58                                      >>>>>>>>>RAP2.2      --------->YAB1                               <-----------RAV1(2)        --------->At4g35610     <---------YAB1                  --------->ANAC46              --------->ARR11(3)  --------->DOF5.7(2)                --------->ANAC55(1)    --------->ANAC46  <---------At4g35610 --------->TOE1(3)                   --------->ANAC58  --------->ARR14(2)    --------->GLK1(2) --------->TOE2(3)       <----------DOF2     --------->ETT(2)      <---------ARR11(3)              <- --DOF2     <------ZmHOX2a(2)        --------->ANAC58 <------ZmHOX2a(1) ---------->DOF2     ---------   aaacgttatcatggatcacggtattagctttgaaattacacgaaatctcgaccgcaggatagacgacaatatctaaaagcatctgacggtagtaacacga  15054800                                          <---------ANAC58                                          --------->ANAC55(2)                                          <---------ANAC58                                         <---------TOE2(2)                                         <---------TOE1(2)                                        <-----------GT1                                      <---------ANAC58                                      <---------ANAC58         ------->GAMYB              --------->PCF2     <---------ANAC58              ----------->GT1              <---------TCP15(1) <------MYB83                 --------->ANAC58            ------>ZmHOX2a(2)             <---------PCF2      <---------ANAC58             --------->ANAC58           <------ZmHOX2a(2)            <------MYB83        --------->MYB59             --------->MYB52(1)          --------->ARR11(3)            <------MYB46(1)  <---------ZAT2              --------->ANAC58               --------->ARR14(2)           --------->MYB59   --------->ZAT2              --------->ANAC46               <---------ARR11(3)           --------->MYB111(1)<---------MYB52(1)         --------->ANAC58         --------->ANAC58  < -----------CBF  <---------ALFIN1<------MYB46(1)       --------->LBD16            --------->ANAC58 <- >ZAT6    <--------P       <-----------RAV1(2) <---------AHL20(2)              *TSS     <---------ARR14(2)   gtattgtctctagtaggtcccaccatgttccagttgggtttcttacgttttaaatgcccgagcaacggaaaaatgtccgagaccaagacagatcgtttta  15054900                    <----------DOF2                    <---------DAG2            --------->GLK1(2)            <-----------ARR10           <---------GLK1(1)           <---------GLK1(2)                     <------ZmHOX2a(2)        --------->LBD16                         <---------ARR11(3)       <---------HSFB2a(2)         --------->ARR11(3)                   --------->YAB1       --------->HSFB2a(2)        --------->RVE1(1)                    <---------ATHB12            ==      <---------LBD16             --------->CCA1(1)             <---------YAB1                     <-  <---------------AGL15       --------->AHL20(2)--------->ARR14(2)   --------->YAB1                -- -----------------AGL1        <---------AHL20(2)--------->ARR11(3) <---------WOX13(1)        <------- ----------GT1    <---------At4g35610  --------->LBD16     <---------AHL20(2)      --------->GLK1(1)   ttttctcttctgggaatctcagctttttttaaaaaaatatccagagtccagatcatcgtattcaatttgattaatcataaatcagatttcatttcgttat  15055000        --------->ARR14(2)       <------ZmHOX2a(1)       =============================HOX2a_HOX2a     --------->LBD16                                                                      <---------TOE2(3)     <---------TOE1(2)                                                                  <---------ICU4     <---------TOE2(2)                       <-----------GT1                        <---------YAB1    <---------LBD16          <------ZmHOX2a(2)                                  <---------ANAC58   <---------LBD16     <---------ARR14(2) <---------ARR11(3)               <---------ANAC58 ===================================HOX2a_HOX2a --------->WOX13(1)         <---------ANAC58   <------ ---------DOF2         --------->ARR14(2) <---------AHL20(1)           <---------ANAC58--------->ICU4 ---->ZmHOX2a(1)       --------->GLK1(2)  --------->ARR11(3)           <---------ANAC58<---------YAB1 --MYB52(1)    <---------ARR11(3)         --------->AHL20(1)     <-------TEIL   <---------ANAC58   cctttcccaggattcaatttcttcgaatccgatcgaatttcgaatattttcaatccgagttcgagcgttcatggcttccttgtcttgtcattaatgcttt  15055100                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                -----                     --------->ATHB12                                                  --------->MYB52(2)                 --------->ATHB12                                                      <------MYB46(1)                 <---------ICU4                                                        <------MYB83                 -------->ATHB1                  <---------ATHB51                      <---------MYB46(3)                <---------YAB1                   --------->ICU4                       <---------AtMYB61        --------->TOE2(3)               --------->GLK1(1)                             <---------DEAR3(1)     --------->ARR14(2)                 <---------GLK1(1)                <------ZmHOX2a(2)     <-----     <---------ARR14(2)       <---------------AGL15                    <------ZmHOX2a(1)   <------NtERF2 ----DOF2  --------->YAB1 <-----------GT1  --------->YAB1        ----------->HVH21<---------TOE2(3)   tggttcgaatccataaaaatcattgatttcacctattttcagaaatcagaaataatgggtttatcaaatgacaggatcaaattcaacgttggtggcagaa  15055200                                                                                              =======           --------->At4g35610                                                                -------      --------->ANAC58                                                                        <------ZmHOX2a(2)      ----------->HVH21                                                                       <------      --------->ANAC58                                                                       <------- ----->HSFB2a(1)                                                                             -------- ----->HSFC1(2)                                                                              <------- ------HSFB2a(1)                    <------NtERF2                                        <---------LBD16 ------HSFC1(2)                 --------->ZAT2                                           --------->LBD16 -------ARR10             ---------->DOF2                                               <---------LBD16 ---->ARR14(2)            <---------DOF5.7(2)           <---------YAB1                 <---------LBD16 -----ARR11(3)            --------->MYB52(1)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  -------->P -----ARR14(2)        --------->ANAC58  --------->GLK1(2)                   --------->HSFB2a(1)====== ---->GLK1(2)         --------->ANAC58  <---------ARR14(2)                  <---------HSFB2a(1)------ ----GLK1(2)       ------->GAMYB<---------ZAT2  <---------LBD16           <---------GLK1(2)  --------   tcttcgaaacgacagcgacaacgctcgctaacgcaggtcgcgattccttcttcggagcattattcgacgaaaattggaatctttcacaacccggggatct  15055300         <------ZmHOX2a(1)                           <------ZmHOX2a(1) ===============HOX2a_HOX2a                       <-----------RAV1(2) -->GLK1(1)                             ------>ZmHOX2a(2) ---GLK1(1)                             ====================HOX2a_HOX2a                     ------>ZmHOX2a(1) --ARR11(3)                           --------->ARR14(2)                         --------->LBD16 ->ARR14(2)                        <---------HSFB2a(2)                          --------->LBD16 --ARR14(2)          <---------ANAC58 <---------ARR14(2)                       <---------LBD16 ===============HOX2a_HOX2a        --------->HSFB2a(2)                      --------->ARR11(3)   ---- >ZmHOX2a(2)         <---------ANAC58 <---------ARR11(3)             ------>NtERF2   <---------ANAC58 ->ARR11(3)       <---------WOX13(1)  --------->ARR11(3)             --------->LBD16 <---------ANAC58   cttcatcgataggaatccagattgcttcgctgttcttctcgatcttctccgaacaggagacttaaacatcccgcctaatatcccggagcgtctccttcac  15055400  Previous    Next  AGI:  At4g30940.1    Description:  potassium channel tetramerisation domain-containing protein. similar to potassium channel tetramerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G24240.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80633.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45068.1); contains InterPro domain Potassium channel, voltage dependent, Kv, tetramerisation; (InterPro:IPR003131); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210) Range:  from: 15054879    to: 15056832    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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