Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  ------->GAMYB               --------->ANAC58                      <----------ID1               --------->ANAC58                  ---------->DOF2        --------->At4g35610               --------->ARR14(2) -------HSFB2a(2)                     --------->At4g35610 ------>HSFB2a(2)    <---------ARR11(3)   <---------ARR14(2) ---->MYB52(1) --------->ANAC46      ----------->RAV1(1)            <----------DOF2        ---------- ------GT1<----------DOF2          --------->At4g35610      ---------->DOF2               --------->YAB1   ccagaagaacagcttcaacgcaagttctcaatccatgagcagcataacttcaaaagaaacaaaaaagaaactttagctatagattaaaacaataagaaaa  14597100                                                                                          <XXXXXXXXXX                                                 --------->At4g35610                     <XXXXXXXXXXX                                            --------->WOX13(1)                          <---------ARR11(3)                                        --------->GLK1(1)                        <---------ANAC46                                        <---------GLK1(1)           --------->GLK1(2)   --------->ARR11(3)         ------>ZmHOX2a(2)        <---------ANAC46               --------->ARR11(3)   ----------->ARR10       --------->ARR11(3)         <---------ANAC58         =========================HOX2a_HOX2a <-----------RAV1(2)              <---------ANAC58         <------ZmHOX2a(2)  ----------->HVH21 ->GT1 <---------ARR11(3)       <---------AHL20(2)        <-----------HVH21  ------>ZmHOX2a(1)<------   aaaccagatgatctaaatcacatcaaaactcgatttacttggatttcaatctgatgactcgatcagagataatctcgtccttgacgcgaagagcttcttt  14597200                                                                                             <-------                                                                                             <-------                                                                                    ------>ZmHOX2a(2)                                                                                   --------->GLK1(1)                                         --------->ANAC58                          <---------GLK1(1)                                    ------->GAMYB --------->ANAC58                --------->ARR11(3)               --------->At4g35610  --------->YAB1--------->ANAC46         <-----------HVH21<--------            --------->At4g35610    --------->MYB46(3)                     --------->bZIP60(1)-------- --------->DEAR3(2)          --------->WOX13(1)   --------->ANAC58        <---------bZIP60(1)<------- XXXXXXXXXXMIR159A     ----------->GT1   --------->ANAC58            <---------ANAC46   ------>ZmHOX2a(1) XXXXXXXXXMIR159B ---------->CDC5 -------->P  <---------YAB1 <---------ANAC58     <---------ARR11(3)- ----DOF2   <---------At4g35610  --------->WOX13(1)          <---------ANAC58    --------->ZAT14 ----   tgaaccgaagtagtagctgctaagcgggtataaatcaaccatcaagtcatgaacgacatcgtttcgtctcgtcgtgttgtcactgatctcctccatatct  14597300 ----ARR10                                                       <---------ATHB12--------->MYB52(1) --ARR11(1)                           ---------->DOF2       ------>ZmHOX2a(2)<---------AHL20(2) -CCA1(2)                    --------->LBD16               <------ZmHOX2a(2)--------->AHL20(2)     <- ->ARR14(2)                 --------->ANAC46         --------->DAG2         <---------AHL20(2)     -- --ARR11(3)                 --------->ANAC58        ---------->DOF2     <---------YAB1             <- ------>GAMYB               ----------->GT1     <---------At4g35610    --------->AHL20(2)     ------- ----->MYB52(1)             --------->ANAC58    --------->At4g35610    <---------AHL20(2)     -------   aacgctcgagcttcttcacccattttctgcccgtaaaattcaaagacgagagctaaaagcgatctcaatcgattaaaattaaataacagagagaccacga  14597400                                                                ------>NtERF2                                                               --------->ARR14(2)                                                              --------->At4g35610                                                              --------->RAP2.3(1)                                                              <---------At4g35610                                                              --------->ATERF1(1)                                                              <------NtERF2                                                             ------>NtERF2                                                             <<<<<<<<<AtERF-1                                                             <---------ATERF1(1)                                                             <---------RRTF1(1)                                                             <<<<<<<<<AtERF-2                                                             <<<<<<<<<AtERF-4                                                             <<<<<<<<<AtERF-5                                                             <---------ERF1                                                             <<<<<<<<<AtERF-7                                                             <<<<<<<<<AtERF-3                                                             <---------RAP2.3(1)                                                             <---------ORA47(2)                                                             <---------DEAR3(2)                                                            <---------ANAC46                                                            <---------ANAC58                                                            <---------RAP2.3(3)                                                            <---------RAP2.6(2)                                                            <<<<<<<<<<AtTINY2                                                            <---------RRTF1(2)                                                            <---------RAP2.3(2)                     <                                                            <---------ATERF1(2)                    <-                                                            --------->ATERF1(2)                    <-                                                            <---------DEAR3(1)                    <--                                                            <---------RRTF1(3)                    ---                                                            <---------ANAC58                      <--                                                           <------NtERF2                      <------                                                           --------->RAP2.6(3)                -------                                                         --------->ALFIN1                     -------                                                         ----------->HVH21                    <------                                                       <---------ANAC58                    ----------                                                       --------->TGA1a                   <---------At4g35610                                    <---------ANAC58   <---------ANAC46                  --------->ZAT2                                    <---------ANAC46   --------->O2              --------->ANAC58<---         --------->ANAC46           <---------ANAC58   <---------TGA1a<---------------AtSPL3---------         --------->ANAC58          <------NtERF2       <---------O2--------->LBD16--------->LBD16<--- --------ZAT14                   --------->ALFIN1      <---------ANAC58 <---------ZAT14*TSS---------- ------->At4g35610            --------->DAG2           <---------bZIP60(2)       --------->ANAC46<--- --------At4g35610          ---------->DOF2           <-----------------------TaNAC69(2) --------->At4g35610 -->ANAC46              <---------ZAT14       <------ZmHOX2a(2)<---------ARR14(2)--------->ANAC58<--- -->O2   --------->ANAC58   =====================================bZIP_DOF       <---------LBD16 -----   gagcagagaagacgcaagaagaagagtgaagaaaggtgtcgtagtcggatcactgagacgtggcggctccagagagtacttctccgcaattagctgacga  14597500  <------NtERF2 --------->LBD16 ------>NtERF2 <---------MYB46(3) ---------ANAC46 -----NtERF2 --------LBD16 -------RRTF1(1) --->NtERF2 -------RAP2.3(1) ---TGA1a ---->HVH21                                                                          <-----------GT1 -->ETT(2)                                                                      ----------->GT1 ---ETT(2)                                                              --------->ANAC46 ->TGA1               <---------AHL20(2)                                --------->ANAC55(2) ------RRTF1(3)       <---------YAB1                <----------DOF2     <---------ANAC55(2) >MYB52(1)          <---------RVE1(1)              --------------->AGL15--------->ANAC58 ------RAP2.3(3)    <---------CCA1(1)              <----------DOF2      --------->ANAC55(1) ->HVH21    <------ZmHOX2a(1)             <---------YAB1               <---------LBD16 ------DEAR3(1)    <---------ARR14(2)     <---------AHL20(2)         --------->ARR14(2) ------RAP2.3(2)   --------->ARR11(3)    --------->YAB1              <---------ARR14(2) ---->ATERF1(1)    <---------ARR11(3)<---------YAB1<---------------AGL15--------->ANAC58     <-------   cggcgggagagtgaggaagaagatattaatgggcctgttacgatattaatgggcctttagtagtaaacaagaatacggaacgatgttaaacactctattg  14597600                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ====                                                                                                 ----                                                                                   <---------ANAC58    <---------MYB111(1)       --------->AHL20(2)     ---------->DOF2               <---------ANAC58    --------->MYB46(3)  --------->GLK1(2)           --------->YAB1            ======================= -----CBF         ------>NtERF2<---------AHL20(2) --------->GLK1(2)*TSS       <----------DOF2 <------   tttccaactactaaaaacgacgcgagtttctattttataactaaaaaacgagaatcaaagtctctgtttcaaatttgggtcttttgcttcttcttgctca  14597700                                                                                                   <-                                                                                                 ----                                                                                                <----                                                                                           --------->TGA1a                                                                                        --------->DEAR3(1)                                                                                        ----------->HVH21                                                                                       <---------At4g35610                                                                                       --------->ATERF1(1)                                                                                       <------NtERF2<                                                                                       --------->At4g35610                                                                                      <---------ATERF1(1)                                                                                     <---------DEAR3(1)                                                                               <---------MYB52(1)<---    --------->ARR14(2)                                                       <---------ANAC46  <-----    <---------ARR14(2)                                                    --------->GLK1(2)<---------TGA1a   <------ZmHOX2a(1)                                                     <---------GLK1(2) <---------O2 <---------TOE2(3)                                                       --------->ARR14(2)<---------ANAC46 ------O2                                                                <---------ARR14(2)<---------ANAC58 ----->TGA1a           ---------->DOF2                   --------->HSFB2a(2) <---------ANAC58 <------ ------TGA1a       --------->TOE1(3)       <---------ARR14(2)           --------->HSFB2a(1)<---------ANAC58 =================================bZIP_DOF --------->ARR14(2)           <---------HSFB2a(1)<---------bZIP60(2) ----->O2  --------->At5g28300           <---------TOE2(2)              --------->HSFC1(2) --------->O2 ======bZIP_DOF    --------->TOE2(3)     <---------TOE1(2)              <---------HSFC1(2) ========== ---ZAT18 ----------->GT1         ------->TEIL           <---------HSFB2a(2) <---------ANAC58--------   cttgaggaaacacagtaaaaacctaaaaagagaatgaaactcgcaggtctgaaatcgatcgagaacgctcacgaagattccgtttgggcagcgacgtggg  14597800            <---------ARR14(2)      --------->ANAC58      --------->ANAC58     <------NtERF2    ------>NtERF2           <---------At4g35610    <---------ATERF1(1)     --------->At4g35610                                    ------>ZmHOX2a(2)   ----------->HVH21      <---------ANAC58                                  --------->ZAT2   <---------DEAR3(1)     <---------ANAC58                                  <---------ZAT2 ------>NtERF2   --------->DEAR3(1)     <---------ANAC46                                  --------->At4g35610  --------->ATERF1(1)  <<<<<<<<<MYB2                                  ----------->HVH21   <---------ZAT18 --------->LBD16      <-------GAMYB                 ----------->GT1--------->MYB52(1)   <---------At4g35610 ------>NtERF2--------->ETT(2)        --------->GLK1(1)           <---------SPL7 <---------AGP1 --------LBD16<---------ETT(2)        <---------GLK1(1)           ------------------>SPL14--------->ZAT18 ----->ARR14(2)      <---------DEAR3(1)------>ZmHOX2a(2)          ------>NtERF2 <---------CCA1(2) -----PCF2  <---------ARR11(3)       <---------AGP1<---------DEAR3(1) <---------SPL7    <---------LBD16 ---------ANAC46 --------->SPL7      <---------ARR14(2)          --------->ETT(2)--------->ARR14(2) ------ARR14(2)  --------->DEAR3(2)  --------->ARR11(3)          <---------ANAC58<---------ARR11(3) ----DEAR3(2)<------ZmHOX2a(2)       --------->ARR14(2)          <---------RAP2.6(2)    <---------ZAT18 ---TOE1(2) --------->ARR11(3)      <---------CCA1(2)--------->At5g28300--------->SPL7 <---------ANAC46 =============================MYC_MYB<---------ARR11(3)          <---------ETT(2)--------->ARR11(3) ->ALFIN1   --------->ARR14(2)----------->HVH21 ----------->HVH21<---------ANAC58<---------ARR14(2)   ttccggcgacggaagatcgaccggcgttgcttctgactggatctcttgacgagacggtgaagttatggcgaccggacgagctggatcttgtgcggactaa  14597900                                   <---------ARR14(2)                                   --------->ARR14(2)                               <------NtERF2                               <---------At4g35610                              <---------ERF1   --------->ICU4                              <---------RAP2.3(1)      <---------At4g35610          <---------MYB52(1)                             <---------RAP2.3(3)--------->ATHB12                  <---------ANAC46                             <---------DEAR3(1)<---------YAB1                     <---------ANAC58                             <---------RAP2.3(2)<---------ICU4                    <---------ANAC58                      --------->At4g35610 <---------HSFB2a(2)         --------->ATHB12         <----------DOF2<----------DOF2   --------->HSFB2a(2)       <---------WOX13(1)   <---------ZAT18    --------->ZAT2   ------>ZmHOX2a(1) <---------ARR11(3) <----------DOF2 <--------   tactggacactctttgggagtagcagctttggctgcgcatccttctgggattattgcagcatcttcttcgattgatagctttgtccgtgtgtttgatgtt  14598000  Previous    Next  AGI:  At4g29820.1    Description:  ATCFIM-25/CFIM-25 (ARABIDOPSIS HOMOLOG OF CFIM-25). similar to protein binding [Arabidopsis thaliana] (TAIR:AT4G25550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65309.1); contains InterPro domain Cleavage and polyadenylation specificity factor, 25 kDa subunit (InterPro:IPR016706) Range:  from: 14595686    to: 14597487    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g29830.1    Description:  VIP3 (VERNALIZATION INDEPENDENCE 3); nucleotide binding. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65306.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 14597667    to: 14599306    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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