Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->TOE2(3)                                          <---------------AGL15                                          --------------->AGL15               <-----------GT1                                         ===============================================MADS_MADS                                   --------->ANAC46                     --------------->AGL15               --------->YAB1      --------->ANAC58               --------->ATHB12    --------->ANAC58               --------->ANAC58               <---------ICU4    --------->ANAC58          <---------ICU4   <---------YAB1     <--------HAHB4  ---------->DOF2            --------->ICU4------>ZmHOX2a(1)      --------->YAB1             -------- ----------->AGL15           <---------YAB1<----------DOF2   <---------ATHB12<---------AHL20(2) ------------AGL15         --------->YAB1----------------->AGL3  <---------ATHB12<-----------GT1 ------------>AGL3     <----------DOF2   ----------------->AGL2 ------->TEIL--------->AHL20(2)   catgaaaagcaattcaagtatagttcttttcatgatcacacaatcctttattagtaatcaacaatgaatcatttccaattttatcacatttcgaacccta  14534900                                                      ----------------->AGL1                                                     ------>NtERF2            --------->WRKY12                                                   --------->LBD16            ----------->HVH21         --------->YAB1                           <---------ANAC58          --------->ZAT2        <---------ATHB12                          <---------ANAC58          <---------At4g35610       ------>MYB83                               <---------LBD16           <---------ZAT2       ------>MYB46(1)                           <---------LBD16            --------->At4g35610      --------->WOX13(1)                       --------->ARR14(2)          ------->TEIL   <---------At4g35610  <-----------GT1                              <---------ARR14(2)       --------->ANAC46  --------->At4g35610 ->TOE1(3)      --------->GLK1(2)             <---------GLK1(1)  --------->YAB1      --------->REM1(2)   acatttaccaatcacgagaatcaaattagaacccacaaatctaatagcaattccgggcctgaatcgataacaatacgaagctgaccttgtagagctgctc  14535000                                   --------->DEAR3(1)                                   ----------->HVH21                                  --------->RRTF1(1)                     --------->LBD16------>NtERF2                  ------>NtERF2   --------->RAP2.3(1)                  <---------RAP2.3(1)<------NtERF2                 <---------bZIP60(1)----------->RAV1(1)               <---------TGA2(2)  --------->ATERF1(1)              ----------->TGA1    <------NtERF2              ----------->HVH21  ------>NtERF2            <---------At4g35610  <---------RAP2.3(1)                                 <-------TEIL            --------->At4g35610  <---------ORA47(2)                               <---------HSFB2a(1)           --------->DEAR3(1)    <---------ATERF1(1)                             --------->DAG2          <------NtERF2          <---------DEAR4(2)                              <---------TOE1(3)         ------>NtERF2           <---------ERF1                          <---------ETT(2)        --------->DEAR3(1)      <---------DEAR3(1)                       <---------WRKY38(1)       --------->At4g35610      <---------RAP2.3(3)                      <---------DEAR3(1)       --------->ATERF1(1)      <---------RAP2.3(2)                      <---------WRKY12       <---------At4g35610   --------->DAG2                   <---------TOE1(3)  --------->MYB59      <---------ATERF1(1)  ---------->DOF2                    <---------TOE2(3)  <---------TOE2(3)  -    <---------ZAT14 <---------DEAR3(1)              ---------->DOF2      --------->ETT(2) <---------ICU4    --------->ZAT14<------NtERF2<---------RAP2.6(2)--------->YAB1    <---------AtMYB61   <------ZmHOX2a(2)   tgtaactgcagcgccgatgacgccggtgtaaaaggcggcgacatagatagtaatcaaagttgtgaaggtttttggtcgacggtaaggttcgatcatttcc  14535100            <---------HSFB2a(2)         <---------ARR14(2)               <---------CCA1(2)            --------->HSFB2a(2)         --------->ARR14(2)               <---------At4g35610      ---       --------->ARR14(2)         --------->YAB1              <---------ALFIN1                    <--       <---------ARR14(2)      --------->YAB1                --------->ZAT14                 --------       <-----------ARR10      <---------YAB1                <---------ALFIN1      --------->GLK1(1)      <---------CCA1(2)     --------->YAB1       --------------------->WRI1       <---------GLK1(1)-- --------->DOF2      --------------->AtSPL8   ------>ZmHOX2a(1)         ------->TEIL <-----------GT1   caaacagcaaatctctcgaacttattgtacttataatcagcatatttcctccatagttggctccacactccttgcatctctcagatttctctcttctcaa  14535200                                                  <---------PCF2                                              ------->PIF5                                              <-------PIF5                                              <-------MYC3                                              ------->MYC2                                              <-------MYC2                                              ------->MYC3                                             <---------TGA1a                                             --------->TGA1a                                             <---------ANAC58                                             <---------ANAC58                                             ========================================bZIP_DOF                                             <---------ANAC46                                             <------NtERF2                                             ========================================bZIP_DOF                                             --------->ALFIN1                                            ------>NtERF2                                           <---------ANAC46                                          --------->ATERF1(1)                                          <------NtERF2                                         <---------RAP2.3(1)                                         ------>NtERF2                                         <---------ERF1                                         <---------DEAR4(2)                                         <---------ORA47(2)                                         <---------RRTF1(1)                                         <---------RAP2.6(1)                                         <---------DEAR3(2)                                         <---------ATERF1(1)                                        <---------ATERF1(2)                                        <---------RRTF1(3)                                        --------->ATERF1(2)                                        <---------RRTF1(2)                                        <---------RAP2.3(2)                                        --------->ALFIN1                                        <---------DEAR3(1)                                        --------->DEAR3(1)                                        <---------RAP2.3(3)                                       --------->RAP2.3(1)                                       ------>NtERF2                                       <---------ABI4(1)                                       <------NtERF2                                       --------->ATERF1(1)                                      <---------ATERF1(1)                                      <---------RAP2.3(1)                                     <---------RAP2.6(2)                                    ---------                                     <---------DEAR3(1)                                     ---------                                     <---------RAP2.3(2)             --------->GLK1(1)      ---------     --------->DEAR3(1)             <---------LBD16            <---------ARR11(3)    <----------DOF2 ------>HSFB2a(1)           <---------At4g35610--------->ALFIN1--------->GLK1(2) --------->ANAC58   - -------HSFB2a(1)  <-----------GT1 <---------ANAC58   --------->TOE2(2)          --------->ANAC58 *TSS ->HSFB2a(2)    --------->GLK1(1)  <---------ANAC46   --------->TOE1(2)     --------->DAG2 ---------- ------->TOE1(3)<---------GLK1(1)  <---------ANAC58  ----------->RAV1(2)  ---------->DOF2 <---------TOE2(3)   accttcgccgaattttggatttctccgtctagctgtttcgcggcggcgcgtgggaacctgagaaaaatctgatatcaaaaggcaagactttaaacgttaa  14535300        ------>MYB83        --------->MYB52(1)      <---------MYB59  --------->WRKY12 --------->DOF5.7(2) >TOE1(3)       ------>ZmHOX2a(1)                             --------->ZAT6 >TOE2(3)     <---------ZAT18                            --------->TOE2(3) -->GT1 ------>MYB46(1)                                  <----------DOF2      --------->At4g35610 -------->TOE2(3)                                      <---------YAB1         <---------At4g35610 ->GT1<---------MYB46(2) ------>ZmHOX2a(1)     <---------MYB52(1)   ---------->DOF2    ----------->GT1   aacgtttaccaaacagtcctcttattcctacatgttttagttttcagcccttaacttatctttaacacttaaaagtcttgagctcacatttgtaaatttt  14535400                                                                                                    <                                                                                                    <                                                                 --------->MYB46(3)                 <                                                                >>>>>>>>>>>>>>>>>LFY               --                                                         <---------ICU4                            --                <---------YAB1                          --------->ICU4                             <-     --------->TOE2(3)                                  <---------YAB1                            ---   <---------ARR11(3)                                --------->ICU4                              <---   --------->GLK1(2)                        <-----------GT1 --------->YAB1               --------->ZAT6   --------->ARR11(3)          ----------->GT1--------->ANAC46 <-----------GT1           <-----------GT1  --------->CCA1(1)    ----------->GT1      --------->YAB1 <---------YAB1              <-----------GT1  --------->RVE1(1)<---------YAB1     --------->YAB1 <---------YAB1            ------->TEIL     <----   taaaaaatcttatttgatatgattcttgtaaatttgtaaattgtaatcacaacacatgattattgtaaccattgtgctatgtatttgtttttcactatcg  14535500                                                                                               <-----  <---------MYB52(1)                                                                           ------  <--------P                                                       --------->bZIP60(1)    --------->ANAC58 <---------MYB52(1)                                                <---------bZIP60(1)    --------->ANAC58 ---------HSFB2a(2)                                           --------->ANAC55(2)       ---------->DOF2 ------MYB46(1)                                               <---------O2           <----------DOF2 ------MYB83             <---------At5g28300                  --------->O2          <---------ANAC58 ------->MYB46(2)       <-----------GT1                       --------->TGA1a       <---------ANAC58 ------->MYB59      <---------AHL20(2)                        ======================================= --------MYB46(3)  <---------AHL20(2)                         ==================================bZIP_DOF ------>SPL7 ----------->GT1                                  <---------TGA1a   <---------ANAC58 ------MYB52(1)    --------->AHL20(2)                         =====================================bZIP_DOF -----SPL7 ---------->DOF2                               --------->bZIP60(2)    <---------ANAC58-----   ttcggtaagttgagaaagttataaatttaccccaaaactatggaaatgagacttatgcaacctcacatgacttcatcaataagcttgctttaaagcaata  14535600                                                          <----------DOF2                                                         <---------ANAC58                                                   <---------ARR14(2)    --------->At4g35610                            --------->ARR14(2)          --------->ANAC58 ----ATHB12----------->GT1                      --------->YAB1                 --------->ANAC58 --->ICU4----------->GT1                      --------->GLK1(2)         <----------DOF2            -- ======bZIP_DOF   <-------TEIL           --------->At4g35610   <------ZmHOX2a(1)         ----------->TGA1 ----->DOF2<---------ZAT6             --------->At4g35610<---------ANAC58      --------->ANAC46------   aagaacagcagtagtgaaaatacatttgcaattgactattagcagaagaatcgtaactggctttaggaagtattcttttacacccaaaaatatgacgata  14535700                                                                   <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                <---------ARR14(2)                                                                --------->GLK1(2)                                ------->GAMYB                   --------->ARR11(3)                               --------->MYB46(3)       <---------ARR11(3)                      <---------ANAC58                 <---------CCA1(2)                      <---------ANAC58 <---------MYB46(3)       --------->ARR14(2)          <---------At4g35610 -------->P     --------->TOE2(3) --------->RVE1(1)       <---------ZAT2          <---------ZAT2      --------->ANAC58        <---------ARR11(3)               <---------At4g35610          --------->ZAT2   <---------At4g35610        --------->AHL20(1)               --------->ZAT2          --------->At4g35610 --------->ANAC58        <---------AHL20(1)               --------->At4g35610  <---------GLK1(2)   <---------ANAC46 <-----------RAV1(1)>>>>>>>>>RAP2.2             ------->TEIL ------->ANAC46  <---------ARR14(2)  <---------GLK1(2)<---------AHL20(2)             <-----------RAV1(2) --->CCA1(2)     --------->ARR14(2)<---------ATHB12   --------->ARR11(3)           <---------REM1(1)<   tacagaattttaagctgagtatttgcttgagcaaccaaagattgttgccttagtaatatatctaaaaatctggcacttcaacttgatgcagctggtttgg  14535800  Previous    Next  AGI:  At4g29660.1    Description:  EMB2752 (EMBRYO DEFECTIVE 2752). similar to unnamed protein product [Vitis vinifera] (GB:CAO65369.1) Range:  from: 14534269    to: 14535298    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g29670.1    Description:  thioredoxin family protein. Identical to Thioredoxin-like 6, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8LCT3;GB:Q94F31;GB:Q9SU84); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G26160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65368.1); contains InterPro domain Thioredoxin family (InterPro:IPR015467); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain (InterPro:IPR013766) Range:  from: 14535548    to: 14537256    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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