Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(1)
--------------------->
WRI1
--------->
HSFB2a(1)
<---------
GLK1(1)
--------->
HSFC1(2)
--------->
GLK1(1)
<---------
HSFC1(2)
<---------
At4g35610
<---------
HSFB2a(1)
--------->
ANAC58
--------->
ARR11(3)
--------->
DEAR3(1)
--------->
ANAC58
<---------
CCA1(2)
------->
GAMYB
--------------------->
WRI1
------>
ZmHOX2a(1)
<---------
ZAT14
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
<---------
At4g35610
--------->
ZAT14
--------->
ANAC46
<------
tctccttcgctcgcatctccttcgctctcatctccttcgctcacatcttgtgactctaaactgttctcggtctcctcaacagcgacgcttccttctccac
12767700
---------
--------->
ANAC58
<XXXXXXXXXXXXXXXXXXXXXXX
MIR836
<------
MYB83
--------->
ANAC58
--------->
LBD16
---------->
DOF2
<------
MYB46(1)
=================
--------->
ARR14(2)
<----------
ID1
--------->
ALFIN1
=================
<---------
At4g35610
<---------
MYB52(2)
<---------
TOE2(3)
<---------
O2
---
--------->
At4g35610
<---------
WRKY38(1)
<---------
ARR14(2)
<---------
AtMYB61
<---------
TGA1a
---
ALFIN1
<---------
ARR14(2)
<------
ZmHOX2a(1)
<---------
TOE1(3)
--------->
CCA1(2)
cttcttcagcccaatccgaagtctgggcaacgaaggagacaaagggggattttttaaggtgggttttggttttaagagatagagagacgcgagagaaaga
12767800
<---------
MYB52(1)
--------->
SPL7
<---------
SPL7
--------->
HSFB2a(2)
<------
MYB46(1)
----------->
GT1
<---------
HSFB2a(2)
----------->
GT1
<--------
P
<---------
LBD16
<------
MYB83
--------->
LBD16
<---------
ARR14(2)
<-----------
RAV1(2)
<------
ZmHOX2a(1)
--------->
ARR14(2)
->
DOF2
<---------
ANAC58
<---------
At4g35610
----------->
GT1
==
bZIP_DOF
<---------
ANAC58
<---------
ZAT2
<------
ZmHOX2a(1)
============================
MYC_MYB
--------->
At4g35610
--------->
CCA1(2)
<------
ZmHOX2a(1)
<x
------>
ALFIN1
<-----------
HVH21
--------->
ZAT2
<------
ZmHOX2a(1)
<xxxxxxxxxxxxxxxx
smallRNA(s)
gaggggcaggttaatgcgtccggtaaggagggaaacactggagctgcgaattctggaggaagagatggtagaggagatggaaggatgggagaaaatggta
12767900
--------->
MYB52(1)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
GLK1(2)
<---------
ARR14(2)
--------->
ANAC58
<---------
HSFC1(2)
--------->
ANAC58
<---------
HSFB2a(1)
--------->
ANAC46
--------->
ALFIN1
<------
ZmHOX2a(1)
---------->
DOF2
----------->
GT1
--------->
ANAC58
--------->
ALFIN1
xxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
ZAT6
--------->
ANAC58
--------->
CCA1(2)
<---
gaagaggaagaatcggccatggctaaaggcttcaagctagaggtaactatagaagaagccat
tgctgaattgtgagagatagaagaagtggaagtggaag
12768000
<------
ZmHOX2a(1)
*
TSS
--------->
YAB1
--------->
CCA1(2)
<---------
DEAR3(1)
<------
NtERF2
-
<---------
MYB46(3)
--------->
ALFIN1
----
--------->
HSFB2a(2)
<---------
TOE2(3)
<----
---------->
DOF2
<---------
HSFB2a(2)
<---------
TOE1(3)
<-----
---
ZmHOX2a(1)
<------
ZmHOX2a(1)
--------->
ALFIN1
<------
ZmHOX2a(1)
<------
gagaagagaaaagaagaggaagggaagggttttagaacggtgggcgagat
aaggataaggagggccgagacatcatcttcaaatgggctcttagatttac
12768100
--------->
ARR11(3)
<---------
ARR11(3)
---------->
GT1
----->
TOE2(3)
---------->
DOF2
-----
YAB1
--------->
TOE1(2)
<-----------
GT1
----------->
GT1
----
At5g28300
--------->
ANAC58
----------->
GT1
--------->
ANAC58
-----
GT1
--------->
ANAC58
<-----------
GT1
---------->
DOF2
--------->
ANAC58
<-------
catagttaaaatctcattacaagaaccaaagacaaaaaataaccatgtccctctgcaaagaaaatttcacaatctcttacgaaaacaaggtttatataaa
12768200
--------->
AHL20(1)
--------->
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
<--------
--------->
AHL20(2)
<-----------
GT1
---------
<---------
YAB1
>>>>>>>
ZML2
--------->
YAB1
--------->
YAB1
--------->
YAB1
--------->
ARR11(3)
--------->
YAB1
<---------
YAB1
<---------
AHL20(2)
---------->
DOF2
--------->
TOE2(3)
--
AHL20(2)
<---------
YAB1
---------->
DOF2
<---------
ATHB12
----------->
GT1
cttatcaaaacgaagtttatattataaaaaaataatacacaaagtctatataactcaaatcaaagttctagtcacaatttgaatgttaatcttacttcat
12768300
--------->
ANAC58
--------->
AHL20(2)
--------->
ANAC58
----------->
GT1
--------->
AHL20(2)
<-----------
GT1
----------->
GT1
--------->
ANAC58
------>
MYB46(1)
-------
AGL15
--------->
TOE2(3)
--------->
SPL7
<---------
ALFIN1
------>
MYB83
------>
AGL15
--------->
YAB1
<--------
P
--------->
ANAC58
<-----------
GT1
tttggaaattactctatgttaatttggatgttaatttgggtaagcccctctacatgtaaacacacacactcatgtaaatataaacccacttaaatttgaa
12768400
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
--------->
ATHB51
--------->
YAB1
-------->
ATHB1
--------->
AHL20(1)
<--------
HAHB4
<---------
AHL20(2)
<---------
ICU4
--------->
AHL20(2)
--------->
ICU4
<--
<---------
AHL20(2)
--------->
AHL20(2)
----
<---------
AHL20(2)
<---------
AHL20(2)
-------
<---------
ICU4
--------->
YAB1
<---------
AHL20(2)
--------->
YAB1
<-----------
GT1
--------->
AHL20(2)
<-------
--------->
MYB46(3)
<---------
AHL20(2)
<---------
TOE2(3)
<---------
AHL20(2)
gcccatttagaaccatcaaaattattttgacccatataaactcatttagacctatttaaaccatatgtgaattttaatgaattattatttatttgattat
12768500
<---------
AHL20(2)
<---------
AHL20(2)
--------->
TOE2(3)
<---------
YAB1
<---------
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(1)
-------
AHL20(2)
--------->
AHL20(2)
--------->
TOE1(3)
--------->
ANAC58
----->
AHL20(2)
<---------
YAB1
--------->
TOE2(3)
--------->
ANAC58
---------
-->
AHL20(2)
--------->
YAB1
<---------
YAB1
<--------
P
<-----------
GT1
--
YAB1
--------->
AHL20(2)
--------->
YAB1
<----------
DOF2
<---------
TOE2(3)
--------->
ANAC46
ttaatatcattaaatcatataattgcgaaatcacaaacatcatagcataaactttaaaatttcacttgaggtaagcattttattttccacaatacaaagt
12768600
Previous
Next
AGI:
At4g24770.1
Description:
RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding. Identical to 31 kDa ribonucleoprotein, chloroplast precursor (RBP31) [Arabidopsis Thaliana] (GB:Q04836;GB:P92871;GB:Q03394;GB:Q43350); similar to 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative [Arabidopsis thaliana] (TAIR:AT5G50250.1); similar to RNA-binding protein precursor [Persea americana] (GB:CAD18921.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR01
Range:
from: 12766040
to: 12768050
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version