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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                ------>ZmHOX2a(1)
                --------------------->WRI1                                        --------->HSFB2a(1)
           <---------GLK1(1)                                                      --------->HSFC1(2)
           --------->GLK1(1)                                                      <---------HSFC1(2)
           <---------At4g35610                                                    <---------HSFB2a(1)
       --------->ANAC58                 --------->ARR11(3)                    --------->DEAR3(1)
       --------->ANAC58                <---------CCA1(2)                    ------->GAMYB
 --------------------->WRI1    ------>ZmHOX2a(1)     <---------ZAT14   ------>ZmHOX2a(1)
 ------>ZmHOX2a(1)        <---------At4g35610        --------->ZAT14  --------->ANAC46       <------
 
tctccttcgctcgcatctccttcgctctcatctccttcgctcacatcttgtgactctaaactgttctcggtctcctcaacagcgacgcttccttctccac  12767700
                                                                                           ---------
                                                                                   --------->ANAC58
                      <XXXXXXXXXXXXXXXXXXXXXXXMIR836     <------MYB83              --------->ANAC58
             --------->LBD16        ---------->DOF2      <------MYB46(1)           =================
         --------->ARR14(2)     <----------ID1         --------->ALFIN1            =================
    <---------At4g35610   <---------MYB52(2)        <---------TOE2(3)              <---------O2  ---
    --------->At4g35610<---------WRKY38(1)  <---------ARR14(2)<---------AtMYB61    <---------TGA1a
---ALFIN1<---------ARR14(2)    <------ZmHOX2a(1)    <---------TOE1(3)            --------->CCA1(2)
 
cttcttcagcccaatccgaagtctgggcaacgaaggagacaaagggggattttttaaggtgggttttggttttaagagatagagagacgcgagagaaaga  12767800
                  <---------MYB52(1)
               --------->SPL7
             <---------SPL7                      --------->HSFB2a(2)
    <------MYB46(1)       ----------->GT1        <---------HSFB2a(2)
    ----------->GT1<--------P                   <---------LBD16
    <------MYB83 --------->LBD16             <---------ARR14(2)
  <-----------RAV1(2)  <------ZmHOX2a(1)     --------->ARR14(2)
->DOF2      <---------ANAC58          <---------At4g35610                          ----------->GT1
==bZIP_DOF  <---------ANAC58          <---------ZAT2                 <------ZmHOX2a(1)
============================MYC_MYB   --------->At4g35610  --------->CCA1(2)   <------ZmHOX2a(1)  <x
------>ALFIN1<-----------HVH21        --------->ZAT2  <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(s)
 
gaggggcaggttaatgcgtccggtaaggagggaaacactggagctgcgaattctggaggaagagatggtagaggagatggaaggatgggagaaaatggta  12767900
                    --------->MYB52(1)
       --------->ARR14(2)
       <---------ARR14(2)
       --------->GLK1(2)
      <---------ARR14(2)      --------->ANAC58
     <---------HSFC1(2)       --------->ANAC58
     <---------HSFB2a(1)      --------->ANAC46                                            --------->ALFIN1
  <------ZmHOX2a(1) ---------->DOF2  ----------->GT1--------->ANAC58                --------->ALFIN1
xxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------ZAT6  --------->ANAC58       --------->CCA1(2)    <---
 
gaagaggaagaatcggccatggctaaaggcttcaagctagaggtaactatagaagaagccattgctgaattgtgagagatagaagaagtggaagtggaag  12768000
                                                 <------ZmHOX2a(1)
                                                 *TSS
                                                 --------->YAB1
                                             --------->CCA1(2)
                                     <---------DEAR3(1)       <------NtERF2                        -
                                     <---------MYB46(3) --------->ALFIN1                        ----
                            --------->HSFB2a(2)<---------TOE2(3)                               <----
     ---------->DOF2        <---------HSFB2a(2)<---------TOE1(3)                              <-----
---ZmHOX2a(1) <------ZmHOX2a(1)     --------->ALFIN1   <------ZmHOX2a(1)                     <------
 
gagaagagaaaagaagaggaagggaagggttttagaacggtgggcgagataaggataaggagggccgagacatcatcttcaaatgggctcttagatttac  12768100
      --------->ARR11(3)
      <---------ARR11(3)
---------->GT1
----->TOE2(3)          ---------->DOF2
-----YAB1             --------->TOE1(2)                        <-----------GT1      ----------->GT1
----At5g28300    --------->ANAC58                     ----------->GT1      --------->ANAC58
-----GT1         --------->ANAC58   <-----------GT1 ---------->DOF2        --------->ANAC58 <-------
 
catagttaaaatctcattacaagaaccaaagacaaaaaataaccatgtccctctgcaaagaaaatttcacaatctcttacgaaaacaaggtttatataaa  12768200
                           --------->AHL20(1)
                           --------->AHL20(2)
                          --------->YAB1
                        <---------AHL20(2)                                                 <--------
                        --------->AHL20(2)                          <-----------GT1        ---------
                    <---------YAB1                              >>>>>>>ZML2           --------->YAB1
 --------->YAB1   --------->YAB1                             --------->ARR11(3) --------->YAB1
<---------YAB1   <---------AHL20(2)                      ---------->DOF2        --------->TOE2(3)
--AHL20(2)       <---------YAB1     ---------->DOF2    <---------ATHB12        ----------->GT1
 
cttatcaaaacgaagtttatattataaaaaaataatacacaaagtctatataactcaaatcaaagttctagtcacaatttgaatgttaatcttacttcat  12768300
                                      --------->ANAC58                --------->AHL20(2)
                                      --------->ANAC58              ----------->GT1   --------->AHL20(2)
     <-----------GT1    ----------->GT1                     --------->ANAC58       ------>MYB46(1)
-------AGL15 --------->TOE2(3)       --------->SPL7         <---------ALFIN1       ------>MYB83
------>AGL15 --------->YAB1         <--------P              --------->ANAC58  <-----------GT1
 
tttggaaattactctatgttaatttggatgttaatttgggtaagcccctctacatgtaaacacacacactcatgtaaatataaacccacttaaatttgaa  12768400
                                                                                     --------->AHL20(2)
                                                                                     <---------AHL20(2)
                                                                                 --------->AHL20(2)
                                                                                <---------YAB1
                                                                              --------->ATHB51
                                                                              --------->YAB1
                                                                              -------->ATHB1
                   --------->AHL20(1)                                         <--------HAHB4
                   <---------AHL20(2)                                         <---------ICU4
                  --------->AHL20(2)                                         --------->ICU4      <--
                  <---------AHL20(2)                                      --------->AHL20(2)    ----
                 <---------AHL20(2)                                  <---------AHL20(2)      -------
               <---------ICU4                                       --------->YAB1  <---------AHL20(2)
            --------->YAB1                            <-----------GT1--------->AHL20(2)     <-------
        --------->MYB46(3)                          <---------AHL20(2)  <---------TOE2(3)<---------AHL20(2)
 
gcccatttagaaccatcaaaattattttgacccatataaactcatttagacctatttaaaccatatgtgaattttaatgaattattatttatttgattat  12768500
               <---------AHL20(2)
       <---------AHL20(2)
    --------->TOE2(3)
  <---------YAB1                                                           <---------AHL20(2)
 <---------ARR11(3)                                                        --------->AHL20(2)
 --------->ARR11(3)                                                        <---------AHL20(1)
-------AHL20(2)--------->AHL20(2)               --------->TOE1(3)    --------->ANAC58
----->AHL20(2) <---------YAB1                   --------->TOE2(3)    --------->ANAC58      ---------
-->AHL20(2)--------->YAB1          <---------YAB1                  <--------P   <-----------GT1
--YAB1--------->AHL20(2)         --------->YAB1 <----------DOF2 <---------TOE2(3)    --------->ANAC46
 
ttaatatcattaaatcatataattgcgaaatcacaaacatcatagcataaactttaaaatttcacttgaggtaagcattttattttccacaatacaaagt  12768600
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AGI:  At4g24770.1   
Description:  RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding. Identical to 31 kDa ribonucleoprotein, chloroplast precursor (RBP31) [Arabidopsis Thaliana] (GB:Q04836;GB:P92871;GB:Q03394;GB:Q43350); similar to 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative [Arabidopsis thaliana] (TAIR:AT5G50250.1); similar to RNA-binding protein precursor [Persea americana] (GB:CAD18921.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR01
Range:  from: 12766040    to: 12768050    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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