Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   ------>ZmHOX2a(1)                 --------------------->WRI1            --------->GLK1(1)            <---------At4g35610                                                    <---------HSFC1(2)           --------->GATA12                                                        --------->HSFB2a(1)        --------->ANAC58                                                           <---------HSFB2a(1)        --------->ANAC58                 --------->ARR11(3)                        --------->HSFC1(2)  --------------------->WRI1             --------->GATA12                      --------->DEAR3(1)  ------>ZmHOX2a(1)                     <---------CCA1(2)                    ------->GAMYB -----GATA12<---------GLK1(1)   ------>ZmHOX2a(1)     <---------ZAT14   ------>ZmHOX2a(1)        <--- ---->GATA12<---------KAN1 <---------At4g35610        --------->ZAT14  --------->ANAC46       <------   tctccttcgctcgcatctccttcgctctcatctccttcgctcacatcttgtgactctaaactgttctcggtctcctcaacagcgacgcttccttctccac  12767700              --------->LBD16                             <------MYB46(1)                     -------          <---------GATA12                     <---------AHL12(1)                           ---------          --------->ARR14(2)            --------->DOF5.7(1)                         --------->ANAC58          --------->RVE1(2)            --------->DOF5.7(1)<------MYB83              =================          <---------ARR14(2)         ---------->DOF2    --------->ALFIN1            <---------TGA1a          --------->ARR11(2)     <----------ID1--------->AHL12(1)                   --------->ANAC58     <---------At4g35610   <---------MYB52(2)<---------ARR14(2)                     <---------O2     --------->At4g35610<---------WRKY38(1)  <---------RVE1(2) <---------AtMYB61    ================= ------DOF5.7(1)       <XXXXXXXXXXXXXXXXXXXXXXXMIR836<---------TOE1(3)            --------->KAN1  --- ---ALFIN1<---------ARR11(2)    <------ZmHOX2a(1)    <---------TOE2(3)            --------->CCA1(2)   cttcttcagcccaatccgaagtctgggcaacgaaggagacaaagggggattttttaaggtgggttttggttttaagagatagagagacgcgagagaaaga  12767800                           ----------->GT1                   <---------MYB52(1)                --------->SPL7(1)              <---------SPL7(1)     <------MYB46(1)    <------ZmHOX2a(1)         <---------HSFB2a(2)     <------MYB83 --------->LBD16                 --------->HSFB2a(2)     ----------->GT1<--------P         --------->ZAT2   <-----------RAV1(2)--------->DOF5.7(1)     --------->ARR14(2) -->DOF5.7(1)<---------ANAC58          <---------ZAT2  <------ZmHOX2a(1)            ----------->GT1 ->DOF2  --------->KAN1--------->DOF5.7(1)    <---------ARR14(2)                <------ZmHOX2a(1) ============================MYC_MYB   <---------At4g35610              <xxxxxxxxxxxxxxxxsmallRNA(s) ==bZIP_DOF  <---------ANAC58--------->ARR11(2)  <---------LBD16      <------ZmHOX2a(1) ------>ALFIN1<-----------HVH21        --------->At4g35610  --------->CCA1(2)  --------->DOF5.7(1) <x   gaggggcaggttaatgcgtccggtaaggagggaaacactggagctgcgaattctggaggaagagatggtagaggagatggaaggatgggagaaaatggta  12767900                     ---------->DOF2        --------->ARR11(2)        --------->GLK1(2)        --------->ARR14(2)        <---------ARR14(2)            ----------->GT1       <---------ARR14(2)      --------->ANAC46      <---------HSFB2a(1)      --------->ANAC58      <---------HSFC1(2)       --------->ANAC58                                            --------->ALFIN1   <------ZmHOX2a(1) --------->MYB52(1)              --------->ANAC58                --------->ALFIN1 xxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------ZAT6  --------->ANAC58       --------->CCA1(2)    <---   gaagaggaagaatcggccatggctaaaggcttcaagctagaggtaactatagaagaagccattgctgaattgtgagagatagaagaagtggaagtggaag  12768000                                                    <---------KAN1                                                  *TSS --------->DOF5.7(1)                                                  <------ZmHOX2a(1)                                 -                                                  --------->YAB1                                 ----                                              --------->CCA1(2)<------NtERF2                    <----                                      <---------MYB46(3) --------->ALFIN1                      <-----           --------->DOF5.7(1)        <---------DEAR3(1)<------ZmHOX2a(1)                     <------        --------->DOF5.7(1)  --------->HSFB2a(2)<---------TOE1(3)                          <---------RVE1(2)      ---------->DOF2        <---------HSFB2a(2)<---------TOE2(3)                          <---------GATA12 ---ZmHOX2a(1) <------ZmHOX2a(1)     --------->ALFIN1 --------->DOF5.7(1)                  --------->GATA12   gagaagagaaaagaagaggaagggaagggttttagaacggtgggcgagataaggataaggagggccgagacatcatcttcaaatgggctcttagatttac  12768100       --------->RVE1(2)       <---------ARR11(3)       --------->ARR11(3) <---------WOX13(2) ---------->GT1                      <-----------GT1                        --------->ANAC58 ----->TOE2(3)          ---------->DOF2                         <-----------GT1 -----YAB1             --------->TOE1(2)                   <---------AHL12(1) ----At5g28300    --------->ANAC58<---------AHL12(2)   ----------->GT1      --------->ANAC58 <------- -----GT1         --------->ANAC58--------->AHL12(2) ---------->DOF2--------->RVE1(2)----------->GT1-   catagttaaaatctcattacaagaaccaaagacaaaaaataaccatgtccctctgcaaagaaaatttcacaatctcttacgaaaacaaggtttatataaa  12768200                              <---------AHL25(3)                            <---------AHL12(2)                            --------->AHL20(3)                            <---------AHL25(2)                            --------->AHL25(2)                            <---------AHL20(3)                            --------->AHL20(2)                            <---------AHL12(3)                            --------->AHL20(1)                           --------->YAB1                           --------->AHL12(2)                           <---------AHL12(2)                         --------->AHL20(3)                         <---------AHL20(2)                                                 ---------                         <---------AHL20(3)                          <-----------GT1        <--------                         --------->AHL20(2)                      >>>>>>>ZML2           --------->YAB1  --------->YAB1     <---------YAB1                           --------->ARR11(3) --------->TOE2(3) <---------YAB1    --------->YAB1                         ---------->DOF2        --------->YAB1 --AHL20(2)       <---------AHL20(2)                    <---------ATHB12         --------->YAB5 -------->RVE1(2) <---------YAB1     ---------->DOF2   --------->RVE1(2)        ----------->GT1   cttatcaaaacgaagtttatattataaaaaaataatacacaaagtctatataactcaaatcaaagttctagtcacaatttgaatgttaatcttacttcat  12768300                                       --------->ANAC58                              <---------WOX13(2)                         ----------->GT1                                    <---------AHL12(2)                  <---------WOX13(2)   --------->ANAC58                --------->AHL20(2)                  --------->WOX13(2)  --------->SPL7(1)              ----------->GT1   --------->AHL20(2)      <-----------GT1   <---------RVE1(2)                    <---------ALFIN1       ------>MYB83 ------>AGL15 --------->YAB1  --------->WOX13(2)             --------->ANAC58       ------>MYB46(1) -------AGL15 --------->TOE2(3)      <--------P              --------->ANAC58  <-----------GT1   tttggaaattactctatgttaatttggatgttaatttgggtaagcccctctacatgtaaacacacacactcatgtaaatataaacccacttaaatttgaa  12768400                                                                                      <---------AHL25(3)                                                                                      <---------AHL20(2)                                                                                      --------->AHL25(1)                                                                                      --------->AHL20(2)                                                                                      <---------AHL25(1)                                                                                     --------->AHL25(3)                                                                                     <---------AHL20(2)                    <---------AHL25(3)                                              <---------AHL12(2)                    <---------AHL20(3)                                            <---------AHL12(1)                    <---------AHL25(2)                                            --------->AHL20(2)                    <---------AHL12(2)                                            --------->AHL12(1)                    --------->AHL25(2)                                           <---------YAB1                    --------->AHL20(1)                                           --------->AHL25(3)                    --------->AHL20(3)                                          <---------AHL12(2)                    <---------AHL20(2)                                          <---------AHL25(2)                   <---------AHL25(2)                                           --------->AHL12(2)                   <---------AHL25(3)                                           --------->AHL20(3)                   <---------AHL20(2)                                           <---------AHL12(3)                   --------->AHL20(2)                                           --------->AHL12(3)                   --------->AHL12(3)                                           <---------AHL20(3)                   <---------AHL12(3)                                           --------->AHL25(2)                   --------->AHL25(3)                                          --------->YAB5                   <---------AHL25(1)                                          -------->ATHB1                   --------->AHL25(1)                                          --------->ATHB51                   --------->AHL25(2)                                          --------->YAB1                   <---------AHL12(1)                                          <---------ICU4                   --------->AHL12(1)                                          <--------HAHB4                  --------->AHL25(1)                                          --------->AHL25(3)                  <---------AHL25(1)                                          <---------AHL12(1)                  --------->AHL25(2)                                          <---------YAB5                  <---------AHL25(2)                                          --------->ICU4                  --------->AHL25(3)                                          --------->AHL12(1)   <-                  --------->AHL12(1)                                       --------->AHL20(2)     <--                  <---------AHL12(1)                                     --------->WOX13(2)       <--                  <---------AHL20(2)                                  --------->AHL25(2)         ----                  --------->AHL12(3)                                  --------->AHL20(2)         ----                  <---------AHL12(3)                                  --------->AHL25(1)        <----                 --------->AHL25(2)                                   <---------AHL25(1)        -----                 --------->AHL20(3)                                   <---------AHL20(3)      <------                 <---------AHL25(2)                                  --------->YAB1 --------->AHL12(2)                 --------->AHL12(2)                                  --------->AHL12(2)       -------                <---------ICU4                         <-----------GT1<---------AHL20(2)      -------             --------->YAB1                          <---------AHL25(1)  <---------TOE2(3)<---------AHL20(2)         --------->MYB46(3)                          <---------AHL20(2)  <---------WOX13(2)  <-------   gcccatttagaaccatcaaaattattttgacccatataaactcatttagacctatttaaaccatatgtgaattttaatgaattattatttatttgattat  12768500        <---------AHL20(2)       --------->AHL20(2)     --------->TOE2(3)    --------->YAB5   <---------YAB1                                                           <---------AHL20(2)  <---------ARR11(3)                                                        --------->AHL20(2)  --------->ARR11(3)                                                        --------->AHL20(3) --------AHL12(2)                                                           --------->AHL25(2) -------AHL20(2)                                                            --------->AHL25(1) -------AHL25(3)                                                            --------->AHL25(3) ----->AHL20(2)   --------->WOX13(2)                                        <---------AHL25(2) ----->AHL25(3) <---------AHL20(2)                                     <---------YAB5 -----AHL12(2)  <---------AHL25(1)                                    --------->ANAC58 ---->AHL12(2)  --------->AHL25(1)                     <---------AHL12(1)   <---------AHL20(1) ---AHL12(1)    <---------YAB1                   --------->TOE2(3)    --------->ANAC58      --------- -->AHL12(1)    --------->AHL20(2)               <----------DOF2 <---------TOE2(3)    --------->ANAC46 -->AHL20(2)--------->YAB1          <---------YAB1     --------->AHL12(1)   <---------AHL25(1) --YAB1<---------AHL25(1)         --------->YAB1 --------->TOE1(3)  <--------P   <-----------GT1   ttaatatcattaaatcatataattgcgaaatcacaaacatcatagcataaactttaaaatttcacttgaggtaagcattttattttccacaatacaaagt  12768600  Previous    Next  AGI:  At4g24770.1    Description:  RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding. Identical to 31 kDa ribonucleoprotein, chloroplast precursor (RBP31) [Arabidopsis Thaliana] (GB:Q04836;GB:P92871;GB:Q03394;GB:Q43350); similar to 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative [Arabidopsis thaliana] (TAIR:AT5G50250.1); similar to RNA-binding protein precursor [Persea americana] (GB:CAD18921.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR01 Range:  from: 12766040    to: 12768050    Orientation: Reverse Links:  TAIR  MIPS  AIP      Please cite the corresponding publications when using AthaMap.
	printer-friendly version