Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->YAB1                --------->At4g35610                <---------At4g35610      <---------AtLEC2             --------->At4g35610     <---------At4g35610               ------>ZmHOX2a(1)            -   <------ZmHOX2a(1)<------ZmHOX2a(1)--------->At4g35610------>ZmHOX2a(1)                          <-   aactaggaacaagtcgtctgcaggaatcaaaaccagtccatctgcatagctcatgctcctattttccagcatcctagagcaaaatacaaaactatcccat  12748600                                        <---------ALFIN1                                          ---                                    --------->At4g35610                                           <--                               <---------At4g35610                                              -----   ---------->DOF2          ---------->DOF2   --------->YAB1                               <---------GLK1(1) -------->YAB1         <---------AHL20(2)    <---------YAB1                      --------->At4g35610 --------YAB1       ----------->GT1 --------->GLK1(1)                            <---------At4g35610   tatcaaaaagaaaacaaacacagagttaatttaagcagagctccactataatagatgagaaaatgtgatacaaaccgttctacagctctctggacatcct  12748700            <----------DOF2           <---------ANAC58           <---------ANAC58                                                                 ---------       <---------ANAC46        --------->AtMYB61            --------->YAB1               --------->LBD16       <---------ANAC58      <---------ARR14(2)            <---------ATHB12         <---------GLK1(1)       <---------ANAC58      --------->ARR14(2)          --------->GLK1(1)          --------->GLK1(1) ------>HSFB2a(2)        --------->At4g35610             <---------GLK1(1)   <---------YAB1<---------GLK1(2) -------HSFB2a(2)        <---------At4g35610----------->RAV1(1)              <---------AHL20(2) ->ZmHOX2a(1)       <----------DOF2        --------->MYB46(3)  ---------->DOF2--------->ATHB51  -----   ctagacgagccgtgcttgaaggctttaagcagacctccactagaaaccacagaaaatggaaatcataaagagaagctctataattgaaatccagaatcga  12748800                                                                 <---------ZAT14                            <------ZmHOX2a(1)                   --------->ALFIN1                        <---------TOE2(1)                       <---------REM1(1)                        <---------TOE1(1)                     <---------ANAC46                       <-------TEIL                           <---------ANAC58                      --------->CCA1(2)                       <---------ANAC58                     --------->ARR11(1)                   --------->ARR14(2)         ------>NtERF2                --------->MYB52(1)                        <---------ARR14(2)        <---------DEAR3(1)            --------------->AtSPL3                       --------->ATHB12        --------->DEAR3(1)    <------ZmHOX2a(1)--------->ARR14(2)               <------ZmHOX2a(1)          ----------->HVH21   ----------->GT1   <---------ARR14(2)             --------->ALFIN1            --------->At4g35610 >GLK1(2)   <---------------AtSPL8            <------NtERF2  <---------MYB46(3) <---------At4g35610 ----->DOF2 --------------->AtSPL8     <---------ANAC46  <------ZmHOX2a(1)    ---------->CDC5--------   aaggaaggagaattgaagtaccagatacgaggaatttgttctcgtggaggcaaggaggaggattgggtgtagcgactggctcagcgacggctatttgcac  12748900                                                                           --------->AtMYB61                                                                         ----------->RAV1(1)                                                                        <---------ALFIN1                                                                      ------>ZmHOX2a(1)                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                             --------->GLK1(2)             <------NtERF2            <----------DOF2                                 --------->ARR14(2)         <---------ANAC58      <---------DEAR3(1)                                    <---------ARR14(2)         <---------ANAC58 ->ZAT18  --------->At4g35610            --------->AtLEC2  <------ZmHOX2a(1)  <---------TOE2(2)   tggaatagtcgctgcttcaatggggttttggtaagagacctccatggaagcgtttggaagaggaatcgggtcctccaccataggtttttgctcggcaatc  12749000                                                                                              <------                                                                                              -------                                                                                              -------                                                                                             <-------                                                                                            <--------                           --------->ARR14(2)                                         <----------DOF2                           <---------ARR14(2)                                    <-----------GT1                <---------ANAC46                                              <---------ARR11(3)                <---------ANAC58                                              --------->ARR14(2)                <---------ANAC58                             ------------>CBF --------->ARR11(3)        <---------ZAT18<-----------------AG            --------->DAG2         <---------ARR14(2)        <---------ZAT14<---------LBD16                ---------->DOF2         <---------GLK1(2)        --------->ZAT18<-----------------AGL1    <------NtERF2     ------------>CBF<-----------GT1---   tccatgggagtgctcatggtgtgtctctggatttgggaacaacaccaaggccgagaaaaagttgtcaatttcaattttcagattttctcttttctccggg  12749100     ------>NtERF2     <------NtERF2                                <-----------GT1             ----------->GT1   <---------ANAC58                    <---------YAB1                        <---------TOE1(3)   <---------ANAC58                  <----------DOF2            --------->ZAT14 ---HSFB2a(2)           <---------ANAC58         <---------ZAT14<---------ZAT14 -->LBD16      <----------DOF2      <-----------------AGL3      <---------ZAT18                    -- -->HSFB2a(2)---------->ID1         ================================================================= --LBD16    <-----------GT1        <---------At4g35610 <---------MYB52(1)    <---------TOE2(3)------- -LBD16 <----------DOF2 <---------ANAC46 <------------CBF       --------->ZAT18             --------- ------->TaMYB80        <---------ANAC58--------->ATHB12   ------------>CBF <-----------RAV1(2)   ---   aataggcgggcttttttcttttttttgggtgttttgcagcttttattggtgtttactgtttggcaatgcactgaaatttcaggtaaatttgtaagaaagt  12749200                                         <---------AHL20(2)                                        --------->AHL20(2)                --------->YAB1          <---------AHL20(2)             --------->YAB1             --------->AHL20(1)          --------->YAB1              <---------YAB1         --------->AHL20(2)          --------->AHL20(2)     <---------YAB1   <---------------AGL15    --------->AHL20(2)--------->TOE1(3) <---------AHL20(1)    <---------AHL20(2)--------------->AGL15        --------->ANAC58                            ------   --------->AHL20(2) --------->TOE2(3)--------->YAB1                                         <------   --------->YAB1  <-----------GT1  --------->AHL20(2)                                        ------- ------->ICU4--------->AHL20(2)     <---------AHL20(2)                                        <------ =====================================MADS_MADS    --------->ANAC58                           ------- ---->GT1<---------AHL20(2)  ----------->GT1    --------->STY1(2)                             ------- ->DOF2 --------->AHL20(2) ---------->DOF2      <---------STY1(2)                          <------ZmHOX2a(1) --------->CBF--------->AHL20(1)   --------->AHL20(2)                              --------->TOE2(3)<   aacaattaaaattaataatattaacctcaaaaagaaaattaatataatctagctagcaaaataatgtatgagaaaattttaaaaacataaataggagata  12749300                                <-------GAMYB --->CCA1(2)                   ----------->GT1 ---ARR14(2)                  <---------YAB1              <----------DOF2 -->ARR11(3)                -------->HAHB4             <---------AHL20(2) ---ARR11(3)                --------->YAB1          <---------AHL20(2) -->ARR14(2)               --------->ICU4      --------->AHL20(2) -->ARR11(1)           --------->AHL20(2)      <---------AHL20(2)        <---------ATHB12 ---------ANAC46----------->GT1<---------MYB46(3) <---------YAB1  --------->MYB59   tggtgttgaagactaagctcgaaaaaaaaatgatggttatatgtttgattttattattttctttagattaggcaaatcacttagctattagtatttgtat  12749400                                                       <---------HSFB2a(2)                                                       --------->HSFB2a(2)                                                  <------MYB46(1)                                               <---------ANAC58                                            <---------RAP2.6(2)                                            --------->ANAC46                                         <---------ARR14(2)                                         --------->ZAT14                 --------->WRKY18(1)                                         --------->ARR14(2)            ----------->GT1                                         <---------ZAT14    --------->ICU4     <----------DOF2                               --------->GLK1(2)  <------MYB83        --------->MYB59               -   ----------->GT1        --------->At4g35610  <---------ANAC58   <---------ANAC55(2)      ----------   <---------ANAC46       <---------At4g35610  <---------ANAC46   --------->ANAC55(2)     --------->AHL20(2)   ttgtttagtgaaatttgaaatagttttaagcagactctgtgagtatacggcttggttctacaaagattaagtaaggtcaaactttcagtcaataaaagac  12749500  Previous    Next  AGI:  At4g24710.1    Description:  ATPase. similar to CDC48B, ATPase [Arabidopsis thaliana] (TAIR:AT2G03670.1); similar to unknown [Populus trichocarpa] (GB:ABK94553.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64241.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959) Range:  from: 12745557    to: 12749005    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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