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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<
--
------>
MYB46(1)
--
<---------
MYB59
--------->
ICU4
<---
<-----------
GT1
--------->
ANAC58
<----------
DOF2
-----
---->
GT1
<-----------
HVH21
<---------
ANAC58
<-------
->
MYB59
<----------
DOF2
--------->
TOE2(3)
<---------
ANAC46
<-----------
GT1
--
AGL15
<---------
ALFIN1
--------->
ANAC46
<---------
ANAC58
<---------
TOE1(2)
------
---
AG
------>
MYB83
<---------
DAG2
--------->
LBD16
<-----------
RAV1(1)
------>
ZmHOX2a(1)
<------
---
AGL1
<-----------
GT1
<---------
LBD16
--------->
ANAC58
<-----------
GT1
<---------
MYB52(1)
<-
aataaacctaacattcaccactttaagtccaaaccggaatcaacgtcaagctatgtaatgttgcttatttctttatgtccttcgtttgtaacatttcccg
12564600
--------->
ZAT14
<---------
ZAT14
<-----------
GT1
-------
GAMYB
--------->
ARR14(2)
------->
MYB55(2)
------>
ZmHOX2a(2)
<---------
ANAC58
--------->
GT1
<---------
ARR14(2)
<---------
SPL7
<---------
YAB1
------
MYB52(1)
--------->
ARR14(2)
--------->
At4g35610
--------->
KAN4(2)
---->
LBD16
<---------
DEAR3(2)
<---------
At5g28300
<------
MYB46(1)
---
--
LBD16
--------->
ETT(1)
<---------
RAP2.6(3)
--------->
SPL7
----------->
GT1
---
--->
LBD16
<-----------
HVH21
<---------
ANAC46
--------------->
AtSPL3
--------->
ATHB12
<-------
GAMYB
---
LBD16
<-----------
RAV1(1)
------>
NtERF2
<---------
At4g35610
<-----------
RAV1(1)
<---------
ANAC58
--------
MYB46(3)
<------
ZmHOX2a(2)
<-----------
GT1
--------->
TOE2(3)
<------
MYB83
<---------
MYB46(3)
gtggttactactctgtcggatccagttttgccgtctagtttttacagcggtacgataaatctcaaatgttgtttgatttggttattcttgcgatggttag
12564700
-
<-------
---------
--------->
YAB1
<---------
ICU4
<--------
HAHB4
--------->
ANAC46
-------->
ATHB1
--------->
ANAC46
--------->
AtMYB61
<---------
ICU4
--------->
ANAC58
<---------
ALFIN1
--------->
ICU4
<---------
ZAT6
<---------
REM1(2)
--------->
MYB46(3)
--------->
GLK1(2)
------>
TOE2(3)
<---------
WOX13(1)
<---------
ALFIN1
------->
TEIL
------>
ZmHOX2a(1)
<--------
------>
TOE1(3)
<---------
ANAC46
--------->
ANAC58
--------------->
AtSPL8
--------->
YAB1
--
ccttaatttcgctagatttatgtgtatttgagtgatagctacaagcctacacatcattaccatgtaccaccatctccttattcaaatcagaatcattatc
12564800
<
<
<
<----
-------
<------
<---------
AHL20(2)
--------->
AHL20(2)
--------->
MYB46(3)
<---------
ICU4
--------->
AHL20(2)
--------->
ARR14(2)
--------->
YAB1
<---------
AHL20(2)
<---------
ARR14(2)
--------->
YAB1
--------->
AHL20(1)
-------->
At5g28300
---------->
DOF2
--------->
AHL20(2)
--
ICU4
---------->
ID1
<---------
DEAR3(2)
<---------
REM1(1)
<---------
AHL20(2)
>
ICU4
<---------
DAG2
--------->
DDF1
--------->
ICU4
--------->
ALFIN1
--------->
AHL20(2)
-
YAB1
<----------
DOF2
<-----------
RAV1(1)
--------->
AHL20(2)
<---------
AHL20(1)
------->
ANAC46
<----------
DOF2
---------->
DOF2
---------->
DOF2
<---------
WRKY38(1)
<----
gccgtaaccacttttgtcattttctttttttatatgtcggtaaagaaagaataatgaaataaagaggtgtaagtaagagtcaacaaaataatttaagagc
12564900
----------->
GT1
<------------
CBF
---------
ANAC46
---------
ANAC58
---------
ANAC58
<-----------
GT1
-----
ANAC58
--------->
ARR11(3)
-->
ARR11(3)
<---------
AHL20(2)
<---------
ARR11(3)
---
ARR11(3)
--------->
AHL20(2)
---------->
DOF2
<------
-----
ANAC58
<----------
DOF2
<-----------
TBP
*
TSS
--------->
ATHB12
--------->
ANAC46
ttgtgtgaattgataaaaacactccttttctgttcttggttttatatgaaattt
ataaacaaactcgagtgattacaaagaacttataaaccacttatgt
12565000
<----------
DOF2
<-----------------
AG
<---------
CCA1(1)
<-----------------
AGL1
<---------
RVE1(1)
<---------
ARR14(3)
<---------
ARR11(3)
<---------
ARR11(3)
--------->
AHL20(1)
--------->
ARR11(3)
---------->
DOF2
--------->
ARR14(3)
--------->
At4g35610
<---------
ARR14(2)
<---------
At4g35610
--------->
AHL20(2)
<---------
GLK1(2)
<---------
At4g35610
<---------
AHL20(1)
-----
RAV1(1)
--------->
AHL20(2)
----------->
ARR10
--------->
At4g35610
--------->
ARR11(3)
ggcatactaaaatttaacaaaaaaaaatgttttgcgaaaaataagaagattttgttcatcttttttggtaagatgccagtttagctaaagatatttttca
12565100
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
<---------
ALFIN1
<---------
REM1(2)
--------->
MYB46(3)
<---------
ALFIN1
--------->
ANAC58
--------->
YAB1
--------->
ANAC58
--------->
ANAC58
--------->
YAB1
--------->
ANAC46
<---------
ANAC58
<---------
ICU4
--------->
ANAC58
<---------
AHL20(2)
<---------
AHL20(2)
----------------------->
TaNAC69(2)
<---------
ANAC58
<-------
<---------
AHL20(2)
---------->
DOF2
--------->
ANAC55(1)
<-----------
GT1
--------->
ANAC46
tatataaaaatgacaataaacacattacaaaagacaaaccccacacggctctctctagccaaattacttggccacgaccataaacacaaaacaccgctta
12565200
------>
NtERF2
<---------
RAP2.3(1)
--------->
RAP2.3(1)
--------->
ATERF1(1)
<---------
ATERF1(1)
--------->
ALFIN1
------>
NtERF2
<---------
DEAR3(1)
--------->
At4g35610
<---------
At4g35610
--------->
At5g28300
<---------
MYB46(3)
>>>>>>>>>
AtERF-4
--------->
MYB55(2)
--------->
ATERF1(1)
<---------
AtMYB61
--------->
At4g35610
----
<------
MYB83
<------
NtERF2
>>>>>>>>>
AtERF-3
====
<------
MYB46(1)
<------
NtERF2
----------->
GT1
-----
<---------
AtMYB61
--------->
DEAR3(1)
-----
--------->
MYB111(2)
<---------
ZAT2
<-------
--------->
MYB111(1)
<---------
ATERF1(1)
--------
--------->
MYB55(2)
--------->
ZAT2
<--------
----------->
GT1
--------->
ALFIN1
<---------
At4g35610
--------->
YAB1
<---------
HSFB2a(2)
--------->
ZAT18
<---------
ARR14(2)
<---------
ATHB12
--------->
GLK1(2)
<---------
MYB46(3)
<---------------------
WRI1
------>
ZmHOX2a(1)
--------->
HSFB2a(2)
--------->
ALFIN1
--------->
ATERF1(1)
==================
---
CDC5
--------->
HSFB2a(2)
<---------
ANAC46
--------->
ARR14(2)
==================
gcttctaaaatctgaacatcgagaaaaa
atgagttggtggtgggctggcgccatcggagctgccaag
gtaaatttcaattcaatccttcaaatcatatcc
12565300
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(3)
--------->
ARR11(3)
-->
ZmHOX2a(1)
=========
HOX2a_HOX2a
--------->
ZAT14
---->
TOE2(2)
<---------
ZAT14
---->
TOE1(2)
<---------
ZAT18
<---------
HSFB2a(2)
--
ARR14(2)
<---------
WOX13(1)
--------->
ZAT18
<---------
HSFC1(2)
->
ARR14(2)
--------->
ATHB12
<---------
AHL20(2)
--------->
HSFC1(2)
-
CCA1(2)
<---------
At4g35610
--------->
AHL20(2)
---------->
DOF2
========
HOX2a_HOX2a
<----------
DOF2
--------->
MYB46(3)
=========
HOX2a_HOX2a
<---------
CCA1(2)
--------->
At4g35610
------->
TEIL
--------->
HSFB2a(2)
tccgatcttcatcttcaactgattgaaaatcatctctttaatttgtgtactcgcag
aagaaactcgacgaagatgaaccatcacaaagcttcgagagcgt
12565400
--------->
GLK1(2)
--------->
ARR14(2)
------
<---------
ARR14(2)
<---------
MYB46(3)
------>
NtERF2
<---------
GLK1(2)
<---------
AtMYB61
<------
--------->
HSFB2a(1)
--------->
ALFIN1
<------
<-----------
HVH21
--------->
GLK1(1)
--------->
LBD16
--------
<----------
DOF2
----------->
ARR10
<---------
LBD16
<-------
<---------
DEAR3(1)
<------
NtERF2
<---------
ALFIN1
--------->
ANAC46
--------->
ATHB12
<---------
ANAC46
--------->
ANAC46
<---------
DEAR3(1)
<---------
ICU4
--------->
ZAT2
<-----------
GT1
<---------
ALFIN1
---------->
DOF2
<---------
YAB1
<---------
HSFB2a(1)
--------->
LBD16
<---------
ETT(1)
--------->
AtLEC2
<-----
--------->
YAB1
--------->
HSFB2a(2)
<---------
LBD16
<----------
DOF2
<---------
MYB52(1)
<---------
LBD16
cgctctcatcatcggcgttactggaatcgtcggaaacagcttggcggagattctccctctttccgacacacccggtggtccatggaaagtctacggcgtc
12565500
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AGI:
At4g24220.1
Description:
VEP1 (VEIN PATTERNING 1); binding / catalytic. similar to wound-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G58750.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63254.1); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040)
Range:
from: 12564955
to: 12566765
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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