Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------ANAC46 <---------ANAC46 <---------ANAC58                                                                             ------- <---------ANAC58                                                                         ----------- ----ZmHOX2a(1)                                                      --------->TOE1(3)  <---------ANAC46 ------RAV1(2)  --------->ANAC58                             --------->ANAC58         --------->ARR14(2) --HVH21        --------->ANAC58                             --------->ANAC58         <-----------HVH21 --TGA1    <----------ID1      --------->ARR11(3)          ---------->DOF2            <---------ARR14(2)   ggagcgtgaggtagagacaagcttaagcatgtagataatgtaagtgaagacaatgaaacagataagccaaaccataagttttggaccgggtcgggttaaa  12253900                                          --------->ARR14(2)                                          <---------ARR14(2)        --------->LBD16                  <---------CCA1(2)    <----------DOF2       <---------ANAC58             <------ZmHOX2a(2)   =============================bZIP_DOF       <---------ANAC58            --------->ARR14(2)   =============================================       <---------ANAC46      <---------At4g35610        --------->O2       <---------LBD16       <---------GLK1(1)          --------->TGA1a       <---------ANAC55(1)   --------->At4g35610        <---------TGA1a        --------->AtLEC2 --->DOF2           ------->TEIL   <---------ARR14(2)   <---------O2      <----------DOF2    <------- >GT1 <---------LBD16        --------->ZAT2             =================bZIP_DOF         ---------->ID1   gaccacattccgggtatagatgtacttgatgagctccgatcccatatcggtttttccgacgagtctttctggtttcctttcatccaaattttgttctttt  12254000           --------->CCA1(2)           <------ZmHOX2a(2)                                     <------ZmHOX2a(1)          --------->AGP1                                        --------->ANAC58          --------->ARR11(3)                                    --------->ANAC46          <---------ARR14(2)                         <---------LBD16      <---------ANAC58          --------->ARR14(2)                         --------->LBD16      <---------ANAC58      ---------->DOF2                    <---------YAB1         --------->ANAC58 ===bZIP_DOF        ----------->GT1   <---------AGP1<---------LBD16       --------->ALFIN1 ---DOF2  <---------ARR11(3)     --------->TOE2(3) <---------LBD16      --------->ALFIN1        <----   cttcaaaaaaaagatccaaaatttgtgaaaacaaaccctagttctgtttgcaatccggggagaaacaggaaacagtgtgtgtctgtgtctgtgtagctct  12254100                                     <---------AGP1                                     ------->TEIL                                     <---------ARR14(2)                                     <---------ARR11(3)             --------->YAB1                                     --------->ARR14(2)          --------->WOX13(1)                              --------->AHL20(2)      ---------->DOF2                         ----------->GT1     --------->ANAC46  <------ZmHOX2a(2)   --------->ANAC55(2) ------->TEIL  --------->ARR11(3)       --------->ARR11(3)   <---------ANAC55(2)--------->MYB52(1)<----------DOF2       <---------ARR11(3) ------DOF2         <---------MYB52(2) ------>ZmHOX2a(2)  ---------->DOF2       <-------GAMYB -------   ttgattcgtaacccagaagagaacgaaccgaaaaaaatggatctttctcgctacaaaaaagaaagatcaatgagaatgagactgttgatgccagagaaat  12254200                         <----------ID1                       ---------->DOF2 ----------->GT1   <---------TOE2(3)                              <------NtERF2 *TSS     ---------->DOF2 -->GLK1(1)       --------->MYB52(1)                      <----------DOF2   --------->CCA1(2)   cgagggaaaattagagaaattaagggaaagacaaaagtttttttttttttttgggcttctctttgggcagagagagagatagaagacagattaaaggtga  12254300                                                                                                    -                                                            --------->MYB52(1)                  -----                                                         --------->YAB1                         <----                                                       --------->AHL20(2)                 <---------AHL20(2)                 --------->ZAT6                       --------->YAB1                    <---------YAB1     ------------>CBF                                --------->AHL20(2)    <------ZmHOX2a(1)   ------    --------->ANAC58                             --------->AHL20(2)       ----------->GT1--------->AHL20(2)    --------->ANAC46                             <---------AHL20(2)  --------->DAG2  <---------YAB1 <    --------->ANAC58                          --------->AHL20(2)    ---------->DOF2  <---------AHL20(2)   gagagaacgcaatactctcccactagaaaaactccattaaacgagaaataaaaaaataaaaataacagaaaaaaggaggaaacaaatattattaaaaatt  12254400                                  <---------AHL20(1)                               --------->ATHB51                               <--------HAHB4                               -------->HAHB4                               <--------ATHB1                              <---------YAB1                              --------->ICU4                            --------->YAB1                           <---------AHL20(2)            --------->MYB55(2)--------->AHL20(2)            --------->MYB111(2)<---------ICU4            <---------MYB46(3)<---------ATHB51           <--------P <---------AHL20(1)          <-------GAMYB<---------YAB1 -------->AHL20(2)   <---------ICU4<---------AHL20(2) ---->AHL20(2)      <---------YAB1<---------AHL20(2) -----AHL20(2)   <---------YAB1--------->YAB1 --->AHL20(2)<-------GAMYB--------->AHL20(2)          --------->AHL20(2) ---------AHL20(2)  --------->ICU4--------->AHL20(2)----------->GT1                   <---------ZAT6   aataaaacatggggttgttgtcattatttttaataattaatttctgttaaatataagtaaatagttttatctaattttcatgtttttggtgttagcatta  12254500               <---------ANAC46         <---------AHL20(1)      <---------AHL20(2)                                                                    ---------    <---------YAB1                                            --------->ALFIN1    --------->YAB1    <    <---------AHL20(2)                            --------->AHL20(2)              ----------->GT1  <-    --------->AHL20(2)             <---------TOE2(3)    <---------YAB1    ---------->DOF2  <---------   --------->TOE2(3)          --------->AHL20(2)  <---------AHL20(2)---------->DOF2    ---------->DOF2   --------->YAB1        <---------TOE2(3)<---------ANAC46  --------->ALFIN1 XXXXXXXXXXXXXXXXXXXX>MIR824   actaatattaatatgttttgtgtttttaagaattaaaaaggtttgtgtataaaaaattaagagtgtggatgaaagtgaaagcattcgtaaaaagagacga  12254600                                                     <---------PCF2                                                  --------->ALFIN1                                                 <-------PIF5                                                 ------->PIF5                                                 <-------MYC4                                                 ------->MYC4                                                 <-------MYC3                                                 ------->MYC2                                                 ------->MYC3                                                 <-------MYC2                                                --------->PIF3(3)       <-------TEIL                             <---------PIF3(3)       ------>ZmHOX2a(2)                        --------->TGA1a       =====================================HOX2a_HOX2a       ===========================HOX2a_HOX2a   --------->O2      <------ZmHOX2a(2)                         ----------->RAV1(2)      ============================HOX2a_HOX2a   <---------TGA1a     <---------ARR14(2)                         <---------O2   <---------DEAR3(2)                ------>ZmHOX2a(1)                                              - >CCA1(2)    ------->TEIL     ============================bZIP_DOF     <---------ANAC58           --- -----------HVH21             <---------DAG2  <---------ALFIN1         --------->O2               --- --------MYB46(3)             <----------DOF2---------------->PIF3(2)  <---------ANAC58 ------>ZmHOX2a(1) -ID1--------->ARR14(2)    ------>ZmHOX2a(1)<----------------PIF3(2)   --------->ANAC55(2)      -----   gcggtcggatccatgaatgtgtttgggtcctactttttcctcgttctcccacgtgggccattctgaactatctacgtgtcattttctgtcctaaattcaa  12254700                   <---------ANAC58          ------>MYB46(1)          ------>MYB83<---------TOE2(2)        --------->TOE1(2)        --------->TOE2(2)        --------------------->WRI1       <---------HSFC1(2)       --------->DEAR3(2)       --------->HSFC1(2)       --------->HSFB2a(1)    --------->ARR14(2)       <---------HSFB2a(1)<-------TEIL                 ------->GAMYB      ------->TEIL <---------ANAC58                  <---------ZAT2          ------->GAMYB   <---------MYB52(2) <---------TOE1(2)              --------->ZAT2        <---------At4g35610 -------->TOE1(2)  <---------ANAC46                  --------->At4g35610   <---------ZAT2 ------>ANAC58  <---------MYB52(1)                   <---------At4g35610   --------->ZAT2 ------>ANAC58 <---------DEAR3(2)    <---------At4g35610                   --------->At4g35610------- ----->DOF2--------->ANAC46   <---------ARR14(2)   <---------WRKY38(1)   <---------WRKY38(1) --------   aagctacgaacctacgtcgtttcgtaggctcgtattctcagcgaatgaactgggcaactggctatgagtcgctgggcaactggctatgagtctcaatgac  12254800  Previous    Next  AGI:  At4g23490.1    Description:  fringe-related protein. similar to transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G11350.1); similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT5G41460.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65925.1); similar to unknown [Populus trichocarpa] (GB:ABK95538.1); contains InterPro domain Protein of unknown function DUF604 (InterPro:IPR006740) Range:  from: 12251441    to: 12254280    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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