Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------SPL7                                                                         -------      <---------ANAC58                                                                     <---------ARR11(3)      <---------ANAC58                                                                     --------->ARR14(2) --------AtLEC2                                                                <---------ZAT6 ------- -ANAC58              <---------DAG2                                  --------->KAN4(2)    <---------ARR14(2) >YAB1<---------ANAC46<----------DOF2                             <---------At4g35610     <---------CCA1(2) -ANAC58  --------->ANAC58                                        --------->At4g35610<-----------GT1 -ANAC46  --------->ANAC58    <---------ALFIN1           --------->WRKY38(1)  <---------TOE1(3)------   tgcatggtccgtatgcaatttctacttttgcccctcgcccatctatggtcttatagctattgaccatgagctcattcgctagggttatgaccatatcctt  11705700                                                  --------->TOE2(2)                                      --------->SPL7                                     <---------ARR14(2)                                     --------->ARR14(2)  <------NtERF2                                --------->ANAC58 ----------->RAV1(2)                                --------->ANAC46--------->GLK1(2)                                --------->ANAC58------->TEIL                             <------ZmHOX2a(2) --------->ARR11(3)                       <---------ANAC58      <---------MYB52(2)                       <---------ANAC58    ---------->DOF2      <---------ANAC46                 ---- ---------->DOF2       <---------ANAC46  --------->LBD16<---------MYB46(3)                       <--- -->TOE2(3)       <---------ANAC58  <---------SPL1(2)  --------->ALFIN1                   ----------- -->TOE1(3)       <---------ANAC46  <---------SPL7--------->TOE1(2)--------->ZAT18       --------->bZIP60(1) >ZmHOX2a(1)      <---------ANAC58 --------->DEAR3(1)<---------ANAC46      <---------SPL7<---------bZIP60(1)   agcgaaagtaatccacaatggcttggcttggatcacgccgtaccgcaaagaacctgggtgggggttttgtgcattgtcgtaagggtttgtgacaacatat  11705800                                                                                                   <-                                                                                              -------                                                                                            <------NtERF2                                                                                           <---------ATERF1(1)                                                                                           <---------RAP2.6(3)                                           --------->ANAC46                                ------>NtERF2                                          <---------LBD16                                 >>>>>>>>>AtERF-4                                          --------->LBD16                                 >>>>>>>>>AtERF-3                                          >>>>>>>>>>AtSR1                                 >>>>>>>>>AtERF-1                                          --------->ZAT18                                 >>>>>>>>>AtERF-2                                         ------->GAMYB                                    --------->RRTF1(3)                                        --------->MYB46(3)                                >>>>>>>>>AtERF-7                                       ------>MYB46(1)                                    --------->RAP2.3(3)                                       ------>MYB83                                       --------->RRTF1(2)                                       -------->P                                         --------->DEAR3(1)                                      ------>MYB46(1)                                     --------->ATERF1(2)                                      ------>MYB83                                        --------->RAP2.6(2)                                      --------->MYB52(1)                                  <---------ATERF1(2)                <---------MYB55(2) --------->ANAC58                                       --------->RAP2.3(2)               --------->ANAC58  ------>MYB83           --------->ARR11(3)                >>>>>>>>>AtERF-5        <---------ANAC58<---------At4g35610--------->ANAC58     --------->ATHB12         --------->ERF1        <---------ANAC58--------->At4g35610--------->ANAC58    <---------YAB1            --------->RRTF1(1)     <----------DOF2   <-------TEIL--------->ANAC58     <---------ARR11(3)               --------->ATERF1(1)    <---------DAG2    <--------P ------>MYB46(1)       <------MYB83                      --------->DEAR3(2) <-----------GT1--------->MYB46(3) --------->ANAC46    <------MYB46(1)                   --------->RAP2.3(1) ----->AHL20(1)--------->ANAC46--------->AtMYB61    <---------MYB52(1)                  <---------At4g35610 ------AHL20(1)--------->ANAC58<---------MYB59 --------->ARR14(2) <---------WOX13(1)    --------->At4g35610 >RAV1(1)     ------>NtERF2  ------->TEIL--------->DEAR3(1) <---------REM1(2)<-----------HVH21------>NtERF2   atattacctttcttgccacccaaggtagatgaaccaaacccaaccgcgcaatctgctaggtcttcacgattgacatcccagtcagacttgagccgccaac  11705900                                                      <---------DEAR3(1)                                                      --------->ALFIN1                                                  <---------At4g35610                                                  --------->At4g35610                                                  <---------ZAT2                                                --------->ATERF1(1)                                               <---------At4g35610                                               <-------TEIL                                               --------->At4g35610                                            <---------ANAC58                                            <---------ANAC46                                            <---------ANAC58                                         <--------P  <---------LBD16                                        <---------SPL7--------->ATERF1(1)                                       <---------ANAC46 <------NtERF2        <---------MYB52(1)                                      <------NtERF2  --------->LBD16      <------------MYB.PH3(1)            <-------TEIL             --------->LBD16 ------>NtERF2       <---------At5g28300          <---------ARR14(2)         ------>NtERF2--------->ZAT2  --------->ANAC58          --------->ARR14(2)        <---------ANAC46--------->DEAR3(1)  --------->MYB52(1)        --------->LBD16             <---------DEAR3(1)<------NtERF2--------->LBD16      <---------LBD16              <---------LBD16------>NtERF2   --------->ANAC58     --------->MYB52(1)          <---------DEAR3(1)--------->ATERF1(1)  ------------>MYB.PH3(1)   <---------ZAT14           <-------TEIL--------->ALFIN1         --------->ANAC46  <---------RAP2.6(2)   --------->ZAT14          <---------ARR14(2) <---------ZAT14    --------->ANAC55(1)   <---------ABI4(2)        --------->ARR14(2) --------->ZAT14    --------->ANAC55(2) <------NtERF2   --------->ZAT18       <---------TOE1(2) <------MYB83--------->LBD16  <-----------GT1<---------ANAC46 -----ZmHOX2a(1)         <---------TOE2(3) <------MYB46(1)  <----------TaMYB80      --------->ANAC46 ---->RAV1(1)--------->YAB1 <-----------ARR10 --------->ALFIN1   <---------LBD16   <---------LBD16<--   aggagtccaccggattcatgatgttctgaggttcttcggcggggtagggtgcagccgcggggctatacccgtaataaccgttatatgcggcatggaccaa  11706000                                     --------->At5g28300                              --------->ANAC58                                                      <                              --------->ANAC58                                                      -                              --------->ANAC46                    <---------TOE2(3)        ----------                           <------NtERF2                          <---------TOE1(3)      ---------->DOF2          --------->YAB1<------ZmHOX2a(1)                     <----------DOF2   <---------ARR14(2)  - ----------->HVH21  <---------O2    ----------->GT1      <---------MYB52(1)     --------->ARR14(2)  < ----ZmHOX2a(1)     --------->O2 --------->MYB52(1)    ----------->HVH21      ----------->GT1   -----   ggactgacataagaatagtgccacgaggaggcacgaaacggtgaaatgagtcatggtccgatgggtttaaggtttgagtagggatactaagaaaagagaa  11706100                                            <---------SPL7                                            ----------->HVH21                      --------->O2                                           <---------ANAC46                        <---------TGA1a       --------->ANAC58                    --------->ETT(1)                        <---------O2  ------>ZmHOX2a(2)                 <------------CBF                               --------->TGA1a <------ZmHOX2a(2)                <---------ARR11(3)                               <---------ANAC46<- ---------ARR11(3)              ----------->ARR10                                  <---------ANAC58<- -------->ARR11(3)          <---------At4g35610                          <------------CBF  <--------- ->GT1 --------->ANAC58     --------->At4g35610               ----------->GT1      <---------ANAC58<- -------->ARR14(2)     --------->ALFIN1  <-----------HVH21   --------->ALFIN1      ================== ---------ARR14(2)     <---------ZAT6   <-----------RAV1(1)  <---------AtMYB61     --------->ANAC55(2) ----->DOF2     --------->MYB52(1)--------->ARR11(3)       --------->ALFIN1        <---------ANAC55(2)   aagatcggcaagtatacttaagggagtgttagatgagatattgtgtcggacagattagaaggtgtggtaaacttgtattggtgagacgtgagactttggt  11706200                                 <---------PCF2                                 --------->PCF5                                 --------->PCF2                                 <---------PCF5                                 <---------TCP16(1)                                 <---------TCP15(1)                                 <---------TCP20                                ------>NtERF2                                <---------ATERF1(1)                                --------->ATERF1(1)                                <------NtERF2                               --------->ABI4(2)                               <---------ATERF1(1)                           <---------DEAR3(1)                ----------->TBP------>NtERF2                                                 ------->GAMYB           <------ZmHOX2a(2)  <---------ANAC58                                  --------->WOX13(1) --------MYB46(3)        --------->MYB52(1)                        --------->ATHB12       <---------- --------REM1(1)--------->AHL20(2)                                <---------ATHB12  <---------AHL20(2) -DOF2    --------->ARR11(3)  <---------ANAC58                  --------->WOX13(1) <---------AHL20(2) ----------RAV1(1)    --------->ANAC46                   <---------YAB1       ------------>CBF   <--- =bZIP_DOF<---------ARR11(3)------->GAMYB             --------->ICU4 --------->ICU4--------->AHL20(2)   gttgttgcacaagatcatatatatactcaacggcgggcccatgtttagcccctaaaattatgaaatcagtcattagttatagcaattaaatctaaccctc  11706300                                                       <---------AHL20(2)                                                       --------->AHL20(2)                                                      <---------AHL20(1)                                                      --------->AHL20(2)                                                      <---------AHL20(2)                                                  --------->AHL20(2)                                                 --------->AHL20(2)                                              --------->ATHB51                                              --------->AHL20(2)             <---------DAG2                  <---------YAB1                        <---------AHL20(2)             <----------DOF2                 --------->ICU4                    <---------AHL20(2) <---------AHL20(2)      --------->YAB1    --------->YAB1                      --------->AHL20(2) -GT1    <-----------GT1<---------YAB1    <-------TEIL--------->AHL20(1)      <---------AHL20(2) ---------------------ANAC81       <----------DOF2<---------AHL20(2)     --------->TOE2(3)   tatttcatttgtttcctttttcttctatgatcagtttctttgcattcattatttaatttattttgtttctagttatcttatttattttttagttttccaa  11706400                                                                              <----------DOF2                                                                          <---------ANAC58                                                                          <---------ANAC46                                                                          <---------ANAC58                                                     <-----------GT1     ---------->ID1                                              <---------AHL20(2)     --------->ANAC55(2)                                              --------->AHL20(2)     <---------ANAC55(2)                      <---------YAB1         --------->YAB1        <---------ICU4           ------>ZmHOX2a(1)                <---------YAB1        --------->ICU4           <---------DAG2                <---------AHL20(2)    <---------AHL20(2)                ----           <----------DOF2               --------->AHL20(1)    --------->AHL20(1)         --------->ANAC58       --------->ARR11(3)                --------->AHL20(2)    --------->AHL20(2)         --------->ANAC58       <---------ARR11(3)               --------->AHL20(2)    --------->AHL20(2) <---------CCA1(2) <-   atttttaaaaatcctttttgtattttgattttaaaaatacaattttattaaaattttacagaaaattaattatgtgtcgtcttttatctcactagcaaat  11706500                     --------->At4g35610                 <---------SPL7                 <-----------HVH21                <---------ANAC58                <---------ANAC58            <---------ANAC58            <---------ANAC58       --------->ATHB51       --------->ATHB12      <---------YAB1 ----------->RAV1(2)                             <---------ANAC58      <---------AHL20(2)            <-------TEIL               <---------RAP2.6(3)     --------->AHL20(2)    --------->At4g35610                 ------>NtERF2----------->GT1        <-     <---------AHL20(1)   ------->TEIL        --------->ANAC58--------->RAP2.6(2)              ------     --------->YAB1--------->SPL7   ------->TEIL  --------->HSFB2a(1)<---------ANAC58          <----- ----->AHL20(2)<-------TEIL<---------At4g35610--------->ANAC58--------->DEAR3(1)               <----- ----------GT1 --------->SPL7  <---------AtLEC2  ------->TEIL--------->DEAR3(2)          --------->GLK1(2)   ttaacaatattattgggtccgtcccctgcatctgcatgtacatttctcacgaacatttctcaagccgacttgcttcgatggaaaaatccaaattctagat  11706600  Previous    Next  AGI:  At4g22090.1    Description:  pectate lyase family protein. Identical to Putative pectate lyase 17 precursor [Arabidopsis Thaliana] (GB:O65457); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G22080.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60346.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectate lyase/Amb allergen (InterPro:IPR002022); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 11704015    to: 11706054    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version