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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
MYB46(1)
------>
MYB83
--------->
WOX13(1)
<---------
TOE1(2)
--------->
AtMYB61
<---------
ALFIN1
------>
NtERF2
------
<-----------
HVH21
--------->
LBD16
--------->
SPL7
<-----
--------->
AtMYB61
<---------
ETT(1)
-------->
P
--------->
AHL20(2)
<---------
ALFIN1
--------->
DAG2
--------->
HSFB2a(2)
------>
MYB83
<xxxxxxxxxxxxxx
--------->
MYB46(3)
--------->
At4g35610
<----------
DOF2
<----------
DOF2
--------->
ANAC46
-----------
GT1
------>
ZmHOX2a(1)
---------->
DOF2
<---------
HSFB2a(2)
------>
MYB46(1)
---------
tatcaccaccatcacctcctatgaactgaacacattgaaaaggctgtctctttcccgaccaatctgagtctttgccaacccgaacaccgaataaatgacc
11612500
--------->
TOE1(3)
----------------->
AGL3
--------->
CCA1(2)
<---------
At4g35610
--------->
ARR14(2)
------
--------->
At4g35610
<---------
ARR11(3)
------
--------->
GLK1(2)
<-----------
RAV1(1)
--------->
YAB1
----->
RAV1(2)
======================================
MADS_MADS
<---------
ARR14(2)
------
----
bZIP60(2)
<---------------
AGL15
<---------
TOE2(3)
<---------
YAB1
xx
smallRNA(i)
--------------->
AGL15
--------->
YAB1
--------->
TOE2(3)
-
-->
HVH21
<---------
AtLEC2
---------->
DOF2
<-----------------
AGL3
--------->
ARR11(3)
-------
tggtctgagcctcttccatggctcactactgtataaagaagctgaagctctaaatatagattgaataatgttggaagatataccttcaactatcatcaag
11612600
------>
ZmHOX2a(2)
----------->
HVH21
------>
MYB46(1)
<------
ZmHOX2a(2)
<---------
MYB59
------>
MYB83
<---------
ARR14(2)
----------->
RAV1(2)
<---------
MYB59
--------->
ARR14(2)
--------->
At4g35610
-------->
P
<---------
ARR14(1)
<---------
At4g35610
------>
MYB46(1)
--------->
LBD16
------->
TEIL
------>
MYB83
-
<---------
LBD16
<-----------
ARR10
--------->
MYB55(1)
--
--------->
MYB52(1)
--------->
ARR14(2)
<---------
MYB111(1)
---
--->
ANAC58
<---------
ARR14(2)
--------->
TOE2(2)
<---
--->
AtLEC2
--------->
LBD16
<---------
MYB59
--------->
ARR14(2)
----
--->
ANAC58
<---------
LBD16
--------->
TOE1(2)
<---------
ARR14(2)
-----
-------->
MYB46(3)
--------->
ARR14(2)
--------->
LBD16
<---------
ARR11(3)
<---------
HSFC1(2)
-->
WOX13(1)
<---------
ARR14(2)
------>
ZmHOX2a(1)
--------->
ARR11(3)
--------->
HSFC1(2)
caaacaccggatccaggtccaagacccggacctgacccgaattgttcctgaaacctaccaaataagttcttcaaatgcaaatccat
tcttgaaacttccc
11612700
<------
ZmHOX2a(2)
--------->
CCA1(2)
<---------
AGP1
--------->
AGP1
<---------
ARR14(2)
<-----------
ARR10
--------->
ARR11(3)
<------
ZmHOX2a(1)
<---------
ARR11(3)
--------->
ANAC58
<---------
CCA1(2)
--------->
ANAC58
----------->
ARR10
--------->
ANAC58
<-----------
HVH21
--------->
ANAC58
<---------
ATHB12
------>
ZmHOX2a(1)
-------->
AtMYB61
------>
ZmHOX2a(2)
----------->
GT1
------->
MYB46(3)
==============
HOX2a_HOX2a
--------->
DAG2
--->
NtERF2
--------->
ARR14(2)
===========================
HOX2a_HOX2a
------
ALFIN1
--------->
ARR11(3)
<---------
TOE2(2)
----->
ANAC46
------>
ZmHOX2a(2)
<----------
DOF2
--------->
TOE1(2)
---------->
DOF2
-
---->
MYB46(3)
---------->
DOF2
<---------
ARR11(3)
--------->
TOE1(2)
-------
caccaatgagtcagatctgagtgaaaacaaagctaactttgaaatgatctaatcctacaagaacgcaggaaaaaagtattggtatcagacaataactgga
11612800
<---------
ATHB12
--------->
ANAC58
--------->
ANAC58
--------->
CCA1(2)
--------->
GLK1(1)
<---------
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ARR11(3)
----------->
GT1
--------->
ARR11(1)
--
<----------
DOF2
<---------
ANAC58
----------->
ARR10
<---
<---------
DAG2
<---------
ANAC58
--------->
At4g35610
<---
-------->
RVE1(1)
<---------------
AtSPL8
<---------
At4g35610
<---
---->
GT1
<----------
DOF2
<---------
HSFB2a(2)
--------->
At5g28300
aaatatcgaactttttgtaaaacccagaagagtttttgcatttgggtactgtgatttgaatttcagaagaagatatgcaatggtttcgcagttaaacggt
11612900
---------->
DOF2
--------->
MYB52(2)
----------->
RAV1(1)
<---------
ANAC58
--------->
DREB2C(2)
----------->
GT1
<---------
TOE1(2)
<---------
ETT(1)
--------->
ANAC58
<---------
ANAC58
<-
--------->
DEAR3(2)
--------->
ANAC58
<---------
ANAC46
--------->
AHL20(2)
--------->
HVH21
--------->
ANAC46
--------->
ICU4
---------->
ID1
---------
------
MYB46(3)
<-----------
TBP
<---------
ORA47(1)
<---------
MYB52(1)
<--------
------
ANAC58
<----------
DOF2
<------------
CBF
<---------
AHL20(2)
<---------
AHL20(2)
------
ANAC58
*
TSS
<---------
DAG2
--------->
ATHB12
<---------
ICU4
----------->
GT1
<-
cgtgaccgacaaaag
tcaagagtagagagtagaacaactttttataaacgaaagattggacggtcataaatatttcgtttgtttttttgttaaaaaaatt
11613000
<---------
YAB1
--------->
MYB52(2)
<-
<---------
MYB46(3)
--------->
ANAC58
<-
<---------
MYB52(1)
--------->
ANAC58
<-----------
GT1
--------
ANAC58
--------->
ANAC58
<---------
AHL20(2)
>
AHL20(2)
<---------
SPL7
--------->
YAB1
<-
-
AHL20(2)
<---------
AHL20(2)
--------->
ANAC58
<---------
ARR14(2)
---
--------
ANAC58
--------->
AHL20(2)
----------->
GT1
--------->
ARR14(2)
<---
ttcgtttgttattttagttcaagggattaatttgtagccgtaggcaagaaaaacaaatattggctactatggattcgataatagtttattaccacatttt
11613100
--------->
ARR14(2)
<---------
TOE1(2)
<---------
ARR14(2)
<---------
TOE2(3)
<---------
ARR14(2)
<---------
YAB1
--------->
ARR14(2)
<---------
DEAR3(1)
--------
ANAC58
--------->
ANAC55(2)
--------->
ANAC46
--------
ANAC58
<---------
ANAC58
<---------
LBD16
<
--------
ANAC46
<---------
ANAC55(2)
<---------
ANAC58
<---------
AHL20(2)
-
------->
ID1
<---------
ANAC58
<---------
ANAC58
--------->
AHL20(2)
---------
--------
GT1
<---------
ANAC46
--------->
ATHB12
--------->
AHL20(2)
<-----------
RAV1(1)
ttcgtatttgtgagtgtttcgtattttctatcaatagtcttgaaaatgtttggcttccacggtgcaaattaatattgagtagtaacagttaatgtggcta
11613200
--------->
AGP1
--------->
YAB1
--------->
ZAT2
<---------
ATHB12
--------->
TOE1(3)
--------->
WOX13(1)
--------->
TOE2(3)
<---------
ATHB12
--------->
YAB1
<---------
ZAT2
<-----------
GT1
<--------
HAHB4
<---------
At4g35610
---------
AHL20(2)
<---------
ICU4
--------->
At4g35610
-------->
AHL20(2)
--------->
ICU4
<---------
ICU4
--------->
AHL20(2)
-->
GT1
--------->
WOX13(1)
<---------
YAB1
------>
NtERF2
----------->
GT1
aattaaactcttcaatcaatcaactcgattattatagccttaatagttgccagctctaggtttatttgatggagtcagtttagaagaagagattaaaaac
11613300
<--
---
---------->
DOF2
<---------
YAB1
--------->
YAB1
--------->
ANAC58
<---------
AHL20(2)
<---------
YAB1
--------->
ANAC58
--------->
AHL20(2)
----------->
GT1
--------->
YAB1
<---------
AHL20(2)
--------->
MYB52(1)
----------->
GT1
---------->
DOF2
<---------
AHL20(1)
---------->
DOF2
----------->
RAV1(1)
<---------
ICU4
----------->
RAV1(1)
---
<----------
ID1
<---------
YAB1
<---------
TOE2(3)
----------->
HVH21
--------->
AHL20(1)
aaatgtttgcaaaccagaagaacaa
agggtatcataaaagacaacattgaggtctgtataataagcactgaaagagagacaacacaaaatataatggggt
11613400
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AGI:
At4g21890.1
Description:
similar to unnamed protein product [Vitis vinifera] (GB:CAO22715.1)
Range:
from: 11611855
to: 11612915
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g21895.1
Description:
similar to AT hook motif-containing protein [Arabidopsis thaliana] (TAIR:AT5G52890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62564.1); contains InterPro domain HMG-I and HMG-Y, DNA-binding (InterPro:IPR000637)
Range:
from: 11613326
to: 11614953
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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