Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                            ---------                                                                                      <---------MYB52(2)                                                                                    ----------->RAV1(1)                                                                                 ------->GAMYB  -----                                 --------->TOE2(3)                               --------->DEAR3(1)      <---------LBD16    <---------TOE2(3)               --------->At4g35610     --------->RAP2.6(2)     <---------LBD16    <-----------RAV1(2)    --------->MYB52(1)                --------->ANAC58  --------->GLK1(2)    <-------TEIL         --------->MYB46(3)                   --------->ANAC46 ----->ANAC58         --------->CCA1(2)    --------->ANAC58                      --------->ANAC58 ----->ANAC58         --------->GLK1(2)    --------->ANAC58                     --------->MYB46(3)  < ----GT1          --------->YAB1 --------->TOE1(3) --------->At5g28300   <----------DOF2    ---------   agacaatctcgggacatcaataagattcaggtaaaccctaatcgcacccaaacggtagaagctcaaatcgaaacactttaaaaccgccacaaacacgata  11541900                                                                --------->LBD16   <---------ALFIN1                                            --------->ANAC58                     <  --------->LBD16                                              --------->ANAC58                    -- --------->ANAC58                                              --------->ANAC46                 ----- --------->ANAC58                                             <---------LBD16               <-------- >ANAC58                                                    ------->GAMYB                  <---------YAB1 >ANAC58                                                    --------->AtMYB61         =============== ----->DOF2     <---------GLK1(1)                          --------->MYB46(3)         =============== ---------LBD16 --------->ARR14(2)                  <------ZmHOX2a(1)                 <------ZmHOX2a(1) >ANAC46<---------ICU4                 <----------ID1     -------->P                 --------->ICU4--   aacccgcacataatttcgaattcccatagaaaccctagaaaaaaacaaaaacgaggaaacaacctccgcaaaatcggactgatggccaggattatgctga  11542000          --------->GLK1(1)          <------ZmHOX2a(2)         --------->ARR11(3)         <---------AGP1         <---------ARR14(2)         --------->ARR14(2)        <---------CCA1(2)                                                         --------->At4g35610    <-----------HVH21                                                            <---------MYB46(3) <-----------RAV1(2)   <---------ZAT18                                         <---------At4g35610 -------TEIL         --------->ZAT2                                            --------->ZAT2 ------->CCA1(2)     --------->At4g35610                                       --------->At4g35610 ------>ARR10        <---------At4g35610                                       <---------ZAT2     <-- -At4g35610------>ZmHOX2a(2)                                              --------->ARR14(2)      === ================HOX2a_HOX2a                          <---------YAB1      <---------ARR14(2)   ------ =================HOX2a_HOX2a           <---------ANAC58                  ------->TEIL  <---------SPL7 ------->GLK1(2)<---------GLK1(1)       <---------ANAC58                  --------->GLK1(2)    <-----   gattcaggtcggatctcgatatcagcagactcatcaacgatttcttgcatagtattttgaataaactcatcaaacgaatccagctgttgacgaacgagac  11542100                                <-------MYC3                                ------->MYC3                               <---------ALFIN1                               --------->ANAC58                               <---------TGA1a                               --------->ANAC46                               --------->ANAC58                               --------->O2                               --------->TGA1a                               <---------O2                             <---------ALFIN1                            <---------ZAT18                            --------->DEAR3(1)                           <-----------------PIF3(1)                          --------->At4g35610                         ================MYC_MYB                         ------->GAMYB                                                       <-------                        --------->MYB46(3)                                                   --------                      <-----------GT1                                                    <-------TEIL                   --------->CCA1(2)     ------>ZmHOX2a(1)                           <---------TOE1(3) --------DOF2     --------->ARR14(2)     --------->LBD16                            <-----------RAV1(2) ========================================bZIP_DOF    ------>ZmHOX2a(1)             <-------TEIL --->ARR11(3)     <---------ARR14(2)   ----------->RAV1(2)                     <---------TOE2(3) ----ARR11(3)     <---------ARR11(3)  ------>ZmHOX2a(1)   <-----------TGA1     <---------TOE1(3)  ---   ctttctcttcgaaataagcagatataacagcccacgcgtcctcctgggtaatctcctcatcgtcatcgtcttctacatattgaggttcaggttcgtattc  11542200                                              --------->ZAT14         --------->AHL20(2)            <---------At4g35610           ---------->DOF2 --------->ANAC58   --------->ANAC46                    --------->At4g35610   <---------LBD16       <------ZmHOX2a(1) --ARR14(2)                       --------->ZAT14            <---------HSFB2a(2)  ----------->HVH21<- ->ARR14(2)                       --------->ZAT18        <---------At4g35610    *TSS --------->ANAC58 ------------>AtSPL8              <---------ZAT14        --------->ZAT2       --------->CCA1(2)   ---   gttgtactccatttattctcactctctgaagattagagcacagcaaacttcactactcgagctctcggagacaaagagagagacaggacgcagagaatga  11542300                                                          <---------TOE2(3)                                               <------NtERF2                 ------------>CBF  <-----           <------------CBF                    --------->At4g35610    <---------MYB52(1)      <------   <----------DOF2                           <---------RAP2.6(2)  --------->MYB52(1)          ------- --------RAP2.6(2)      ---------->DOF2      <---------DEAR3(1)  --------->MYB52(1)--------->MYB52(1) ------>RAP2.6(3)    <-----------TBP        --------->RAP2.6(3)  <-----------GT1 --------->MYB46(3)   gacggctttgtgagattgtgagtttataaaggctcgagagagagaagtcggcttaagtttatggaaataaccggtttgtatcaataaccggtttgattaa  11542400                          <-------GAMYB                         --------->MYB111(2)                         --------->MYB55(2)                         --------->MYB111(1)                       <---------ANAC58                       <---------ANAC58                       <-------GAMYB                                                  ------>NtERF2                      <------MYB83                                 --------------->AGL15                      <------MYB46(1)                  --------->ARR14(2)             --------->LBD16                      <---------MYB46(3)            <---------ANAC55(2) ---------->DOF2                ------>ZmHOX2a(2)                   <---------ANAC46   <---------AHL20(2)         ---------->DOF2 <---------MYB46(3)       --------->MYB52(1) ----------->TBP<---------LBD16      <---------YAB1 --------->MYB59             ----------->TGA1  <---------------AGL15      ----------->TBP<---------AtMYB61    <---------MYB46(3)      <-----------------AGL3    ----------->GT1<---------MYB52(1)     ----------->GT1         ----------------->AGL3 ----AHL20(2) <---------ARR14(2)        <------------CBF  <---------ALFIN1   ---------->DOF2 ---AHL20(2)  --------->ARR14(2)  <---------ZAT2 ----------->HVH21----------------->AGL2         <--- -->AHL20(2) <------ZmHOX2a(1)   --------->ARR11(3)<---------LBD16<-----------------AGL2   --------->REM1(1)   atgggattataaaaaggatcggtttggttgttagagagcttggattgttaaatgacggaaacacccttactatataaagaaaagtctccggctacatttt  11542500                                                                                                -----                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                              <------                                                                                             <------NtERF2                                                                                             --------                                                                                            ---------                                                                                           --------->RAP2.3(2)                                                                                           --------->RRTF1(3)                                                                                           <---------DEAR3(1)                 <---------HSFB2a(2)                                                       --------->RAP2.3(3)           <---------CCA1(1)                                                               --------->DEAR3(1)           <---------RVE1(1)                                                              --------->ATERF1(1)       --------->At4g35610                                                                --------->ORA47(2)     <---------WRKY12                                                                     --------->DEAR4(2)    <------NtERF2--------->HSFB2a(2)                                                      <------NtERF2    --------->TGA2(2)                                                                     --------->RAP2.6(1)    --------->ATERF1(1)                                                                   --------->RRTF1(1)   <-----------TGA1                                                                       --------->RAP2.3(1)   <-----------HVH21                                                                      --------->ERF1  <---------bZIP60(1)                                                                    <---------ATERF1(1)  *TSS <------NtERF2                                                                     ------>NtERF2  <---------ANAC58                                                                       <---------RAP2.3(1)  <---------ANAC46                                                                      --------->ANAC46  --------->TGA2(1)                                    <------ZmHOX2a(1)                --------->ANAC58  <---------ANAC58                                --------->ALFIN1                      --------->ANAC58  <---------TGA2(1)                               <---------DEAR3(1)           ----------->RAV1(1)---  --------->bZIP60(1)                            <---------LBD16             --------->LBD16------>NtERF2 --------RAV1(1)<---------LBD16    --------->CCA1(2)<------NtERF2   <---------At4g35610 <---------DEAR3(1)   tgtggcgtcagcgatattttcggaagaagagagagagagacggagagtgaaggcggaggaagggagagagagatgataccgcagcaatggacgccgccgt  11542600                                     --------->HSFC1(2)                                     <---------HSFB2a(1)                                     --------->At4g35610                                     <---------ZAT2 <---------PCF2                      --------->ZAT2 ---->ALFIN1                         <---------At4g35610 ---TGA1a                            <---------HSFC1(2) ---O2                               --------->HSFB2a(1) ---ANAC58                          ------->TEIL ---ANAC46                       --------->ANAC58                                   <-------TEIL -->TGA1a                        --------->ANAC58     --------->ARR11(3)          --------->ARR14(2) ---ANAC58       <---------ICU4  --------->ANAC46     --------->ARR14(2)          <---------ARR14(2) ->ATERF1(1)--------->ANAC58  <---------ARR14(2)      <---------ARR14(2)          <---------GLK1(2) >ABI4(1)   --------->ANAC58  --------->ARR14(2)      <---------ARR11(3)<---------ANAC46 ------>ALFIN1   <---------------AtSPL8        ------->TEIL         --------------------->WRI1   gtgggagcaaatgcacgaataagtactcagcatttacgcagcttccatgtatgtaatatctggactcttaatttgtgtgaatcggattcgtttttgagtt  11542700                                                                     ----------->HVH21                                                      --------->GLK1(2)                                                      <---------ARR14(2)                            <              <---------MYB52(1)                      --------->ARR14(2)  --------->ATHB12        <--             <-------GAMYB                           <---------GLK1(2)  <---------WOX13(1)       <---            --------->MYB52(2)                 --------->YAB1      --------->At4g35610        <------            <---------MYB46(3)                <---------YAB1       <---------ZAT2             <------     <---------ANAC58                       --------->YAB1         <---------At4g35610       <-------     --------->MYB52(2)                    <---------YAB1   <---------MYB46(3)      <---------YAB1---     <---------ANAC58                      --------->ICU4   <-----------RAV1(1)<---------ANAC58<-----    <-------TEIL                         --------->YAB1  <-----------RAV1(1)   <---------ANAC58<-----   ttgatgttcgtggtccgttgttttttgatggtttagttttcgatgatgatgataagaatctgttgttggagctgatagattgggttctgatttggattgg  11542800  Previous    Next  AGI:  At4g21710.1    Description:  NRPB2 (EMBRYO DEFECTIVE 1989); DNA binding. Identical to DNA-directed RNA polymerase II subunit RPB2 (RPB135) [Arabidopsis Thaliana] (GB:P38420;GB:Q9SVS6); similar to NRPC2 (nuclear RNA polymerase C 2), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT5G45140.1); similar to RNA polymerase II second largest subunit [Rhododendron macrophyllum] (GB:AAZ08457.1); similar to RNA polymerase II second largest subunit [Petunia x hybrida] (GB:AAY89347.1); similar to DNA-directed RNA polymerase II subunit RPB2 (RNA polymerase II subunit B2) (RNA polymerase II subunit 2) (DNA-directed RNA polymerase II 135 kDa polypeptide) (GB:Q4 Range:  from: 11535537    to: 11542280    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g21720.1    Description:  similar to unknown [Picea sitchensis] (GB:ABK23300.1) Range:  from: 11542502    to: 11544620    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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