Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                            <--------                                                                                            ---------                                                                                           --------->RVE1(1)                                                                                           <---------GLK1(1)                                 --------->ARR11(3)                                        <---------RVE1(1)                                 <---------ARR14(2)                                        <---------CCA1(1)                                 <---------ARR11(3)                                        --------->GLK1(1)                                 --------->ARR14(2)                                        --------->CCA1(1)                                 --------->GLK1(2)                                        <---------ARR11(3)                          ----------->GT1                                                 --------->ARR11(3)                       --------->ATHB12                        --------->YAB1   <---------ZAT14                      <---------YAB1                        --------->YAB1     <---------ANAC46                 <---------MYB52(1) ----------->HVH21   --------->ZAT6      <------ZmHOX2a(1) <------   gctatccagtgtctcttccattagatgattgtgaaaatctgacattgtttttgtcttacctctaataaaaacacagaaggagcgtagagagagatatctt  11428100                    ----------->HVH21                  --------->At4g35610    ----------->RAV1(1)                                             <---------ZAT18 ---ANAC58        <---------At4g35610                               <---------ZAT14 -ARR11(3)        --------->ZAT2                                    --------->ZAT14          <------- >ARR11(3)        <---------ZAT2                                    --------->ZAT18   >>>>>>>>>TBF1<- ---ANAC58      <------ZmHOX2a(1)       ---------->DOF2<------ZmHOX2a(1)      --------->ICU4---------   gcacagcaacaaggcgaaggagctgactctgtctgagagactaaaagagttttctcaggacaaaaacaagtgcgcttgtgaagatgaagaagaagggacc  11428200                                                         ----------->GT1                                                     <---------YAB1                                                  <------ZmHOX2a(2)                                                 <---------ARR11(3)                                                 --------->ARR11(3)                                          --------->CCA1(2)                                         --------->AHL20(1)                                         <---------ARR11(3)                                  --------     <---------AHL20(2) <---------HSFB2a(2)     <------ZmHOX2a(1)                            -------- --PCF5   <---------AHL20(2)  --------->YAB1    --------->YAB1                       <---------DAG2 ---------DOF2          --------->HSFB2a(2)   <---------TOE2(3)               <---------TOE2(3)    -- -->HVH21 --------->AHL20(2) <-------TEIL<---------AHL20(1)        ---------->DOF2   <----------DOF2   gctatattgaatttatatgctaacttctagattcatgatgcaatatataaggatcatgctggtaaaaaaaaaagacaatgaaggaaacttttttcatgta  11428300                                                                        --------->ZAT18                                                                        <---------ZAT14                                                                        <---------ZAT18                              <---------AHL20(2)                        --------->ZAT14      ----------->GT1      <---------ICU4                             --------------->AtSPL8 ->AtLEC2                 --------->ICU4              --------->YAB1  <---------------AtSPL3 --->GT1                --------->YAB1         <------ZmHOX2a(1)      <---------------AtSPL8--------- -------->DOF2         <---------YAB1        <---------TOE2(3)     ---------->DOF2          <--------   aaaaagaaatgtaaacttgggtttgatgataatgaattgttcatgttaaggactaataaaaacagagaagaaagtgtactaaaatcgaaatttgagctct  11428400                                 --------->MYB52(2)                                 <---------MYB46(3)                               <-------GAMYB                              <------MYB83                              <------MYB46(1)                              <---------DEAR3(2)                             <---------DEAR3(1)                             <---------MYB46(3)                             --------->MYB55(2)                                         <----------DOF2                             <---------DREB2C(2)                              --------->DEAR3(2)                            --------->SPL7                      <----------DOF2    --------->HSFB2a(1)                            <---------MYB55(1)         <------MYB46(1)     <---------SPL7                            <--------P                 <------MYB83<-----------GT1 --------->HSFC1(2) <---------ATHB12          <---------MYB52(1)       <---------MYB52(1)  <-----------HVH21 >At4g35610                <-----------HVH21 <---------AHL20(2) ------>ZmHOX2a(1)  <---------HSFB2a(1) -At4g35610            ------->TEIL   <-----------------AGL3   --------->TOE2(3)   <---------HSFC1(2)   ccaattactaaatcggtgctaaatgaaccggtcggtcgtttctatatttgattcgttcggtttatcctttaaccggtcgaaccgaagcttcttttgttcg  11428500                                                                       --------->ZAT14              -                                                                       <---------ZAT18              -                                              <---------GLK1(1) <---------CCA1(2)                   <                                              --------->GLK1(1) <---------At4g35610             -----                                              --------->At4g35610      <---------ZAT14          <----                                 --------->REM1(1)             ------->TEIL         <---------ICU4  <                                 --------->ANAC58         --------->GLK1(1)         --------->YAB1  <                     *TSS        --------->ANAC58        --------->ARR14(2)       --------->GLK1(2)<-                  <---------CCA1(2)         <------ZmHOX2a(1)<-------TEIL      <---------TOE1(2)-----   tatgaagaaaactaaaatccaaatctctctctggtacaccatgagaggagctctgttcagaaatgcatctctctgcgctcgcagaatcattctttcttct  11428600                                                 ----------------->AGL2                                               ------>ZmHOX2a(1)                                            ------>NtERF2                                            <---------ATERF1(1)                                           <---------ARR14(2)                                           --------->ARR14(2)           --------->HSFB2a(1)           --------->LBD16  ------>ZmHOX2a(2)                    <---------LBD16 <---------GLK1(1)                    <---------ATERF1(1) --------->GLK1(1)                   <---------ARR14(2)                   --------->ARR14(2) <------ZmHOX2a(2)                   --------->ARR14(2)                   <---------ARR14(2) -------->ARR14(2)                  --------->At4g35610               ----------------->AG -------->ARR11(3)                  --------->ABI4(1)                 ----------------->AGL1 -----------ARR10                   <---------At4g35610             --------->ARR14(2) ---->HSFB2a(2)                     ------>NtERF2----------------->AGL3   --------->GLK1(2) -----HSFB2a(2)                 ------->GAMYB--------->ATERF1(1)    <---------ARR14(2) ---------ARR11(3)             --------->MYB46(3)=======================================MADS_MADS ---------ARR14(2)       --------->ANAC58------>NtERF2     --------->ARR11(3) -----ZmHOX2a(1)         --------->ANAC58<---------ATERF1(1)   <-----------GT1--------->LBD16 ---->HSFC1(1)    <----------DOF2  --------->DEAR3(1)      <---------GLK1(2)<---------LBD16   aggatctcccccaatgttccctttctcactccaatcgccgctccggctcctcccaaattcagatttttcagttccgaatccggtgagaactcgactactg  11428700                                                   <-----------ARR10                                      ------>ZmHOX2a(2)                                      ===================HOX2a_HOX2a                                     ====================HOX2a_HOX2a                                     <---------GLK1(1)                                     --------->GLK1(1)          <---------TOE2(3)                                     <------ZmHOX2a(2)        ---------->DOF2                                    <---------AGP1<------ZmHOX2a(1) --------->MYB52(1)                                    --------->ARR14(2)       <---------MYB52(2)                                    <---------ARR11(3)       --------->MYB46(3)                    <-------TEIL    <---------ARR14(2)     ----------->RAV1(1)                     <-             ------>NtERF2          --------->ARR11(3)   --------->At4g35610                       <-            --------->DEAR3(1)     <------ZmHOX2a(1)     <---------At4g35610      ------>ZmHOX2a(1)<-           --------->ORA47(2)     --------->HSFC1(2)    --------->ANAC46      --------->ARR14(2)  ---   xxxxxxxxxxxxxxxx>smallRNA(i)   <---------HSFC1(2) <-----------HVH21 ------->GAMYB           ------   ccactgagtcttcgccgactgattcatccgataagaaggatctcgttgtagaggatgtcagcaacaaaggtaacagactctatcctctcttcaagcttgt  11428800         <---------ALFIN1 -----MYB46(1) -----MYB83                                                          <---------YAB1 --------MYB46(3)                                           --------->ANAC46                     ---- ------>MYB59                                               --------->ANAC58  <---------ALFIN1  ----- --->ATHB12                             --------->ALFIN1    --------->ANAC58 ----------->HVH21 ------   ttggttacctcacacttgaaatggccttgtattagttgaaatgtgtgagtctaattctcatctcgccatttctgaatgcctcacagttttcaattgatcc  11428900                     <---------CCA1(2)          <-------TEIL        --------->ARR11(1)  ------>ZmHOX2a(1)        --------->ARR14(2)  --------->LBD16        <---------ARR14(2)<---------LBD16                                                          --        <---------GLK1(2) ----------->RAV1(2)                                                      -- -->ZmHOX2a(1) --------->HSFC1(2)                                                               ----- ---->TOE1(2)  <---------HSFC1(2)                               <-----------RAV1(1)             <---- >ZmHOX2a(2)  <---------TOE1(2)                           <----------DOF2                  ----------   ttcgatataagattcgtagcttcttatctcctgaactactaggtaatcgtttgaaattgactttatatgttggattttgtggtctcagagcttaaaagcc  11429000  Previous    Next  AGI:  At4g21450.1    Description:  vesicle-associated membrane family protein / VAMP family protein. similar to vesicle-associated membrane family protein / VAMP family protein [Arabidopsis thaliana] (TAIR:AT4G05060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40467.1); contains InterPro domain PapD-like (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) Range:  from: 11426010    to: 11428356    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g21460.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18240.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68106.1) Range:  from: 11428521    to: 11430743    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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