Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <------ZmHOX2a(2)       ---------->DOF2  ----------->RAV1(1)                                               --------->YAB1 ---------ZAT18                                                    <---------ATHB12 ---------ZAT14                                                  --------->WOX13(1) -------->ZAT18                     --------->TOE2(3)  <-----------HVH21                     ------->GAMYB -------->ZAT14           <---------ANAC46          <---------ARR14(2)             ----------->GT1 -----ICU4 <---------ARR11(3)     --------->GLK1(2) --------->ARR14(2)            <---------TOE2(3) --->ICU4  --------->ARR11(3)    <---------GLK1(2)  <---------GLK1(2)        <-----------HVH21   agtacaccagaaagatcaccgattacagtcgtgaagaatcttagagtatgtgcagattgtcacttagcaatcaaacttgtgtcaaaggtttataaccgag  11247700                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             --------                          <-----------GT1                                                 --------->AHL20(2)                    <---------TOE1(2)                                                     <---------AHL20(2)              ------>ZmHOX2a(2)                           --------->ICU4                 --------->AHL20(2)             <------ZmHOX2a(2)                     <---------ANAC58 <--------P           <---------AHL20(2)            --------->ARR11(3)               <---------ANAC58    <---------ZAT6          <---------AHL20(1)            <---------ARR11(3)               <---------ANAC58   <---------ANAC46  ----------->GT1           --------->GLK1(1)     --------->AHL20(2)<---------ANAC58<---------MYB52(1)    --------->AHL20(1)   agattgtagtcagagatcgtagcaggtttcaccattttaaaaatggttcttgttcttgccaagattactggtagtctggtaatgcagaaaataaaattat  11247800 -->ATHB51 ---ICU4 -->ATHB12              <---------LBD16              <---------HSFB2a(2) ->ATHB1  --------->ARR14(2)                ---------->DOF2 --YAB1   <---------ARR14(2)               <---------AHL20(2)                            ----------->GT1 --AHL20(2) ------>ZmHOX2a(2)              --------->AHL20(2)                           ----------->GT1 --ATHB51 <---------ARR11(3)          <---------MYB52(1)                    <---------TOE2(3) ->ICU4   --------->ARR11(3)         --------->TOE2(3)          ----------->GT1      <-----------RAV1(1) ->AHL20(1)<------ZmHOX2a(2)   --------->GLK1(2)     --------->HSFB2a(2)   ---------->DOF2          <   tgtttcatcgcagatcgttcaaattctacggacaatcttcgttaattaaagtcttctaggggaaatttgtaaaattttaaagtatatatgtgggtaaatt  11247900                                                                                             <-------                                                                                      <-------MYC3<--                                                                                      ------->MYC3<--                                                                 ----------->GT1<-----------GT1   <--        ---------->DOF2 <---------ARR14(2)                       <---------ANAC58    <---------ANAC46     >>>>>>>>>GATA-1    --------->ARR11(3)                       <---------ANAC46   --------->LBD16--   ----------->GT1     <---------CCA1(2)        <----------ID1   <---------ANAC58<---------At5g28300< ---------AtLEC2    <-------TEIL <---------MYB52(2)     ----------->GT1        --------->KAN4(2) <---   ttgcatagataaaagtaatgggttcaaatcttgcaactaaaaaacttataggggcaaaacgaaaattgagtgaaatgagattataccgcgtgttttcatg  11248000           --------->AHL20(1)           --------->ARR11(3)     ----------->GT1    ----------->GT1                                                                   --------->ANAC46  <------------CBF                                                    --------->HSFC1(2) --AtLEC2  <---------AHL20(1)                                         <---------HSFC1(2)        ----- -------ANAC46                                                        --------->HSFB2a(1)   <-------- -------ANAC58                                                        <---------HSFB2a(1)*TSS   <---- -------ANAC58                        <---------DAG2       <----------DOF2 <----------DOF2  <-------- ------->LBD16                        <----------DOF2 ---------->DOF2--------->ANAC58 --------->ANAC58 ------NtERF2                     ---------->ID1    <---------------------WRI1    <------ZmHOX2a(1) ------LBD16          --------->At4g35610 <---------AHL20(2)         --------->ANAC58 --------->ANAC58   gcgggattggaaatattttgaagtagatgaaaatttggcgctttttatttagtctgtaaagctttcaagggaagcctctttgaaggacacgcttcgtcat  11248100                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                         --------->ZAT6                                                                                       ------>NtERF2                                                                                       <------NtERF2                                                                                      <---------SPL7                                                                                      <---------ZAT18                                                        <---------ANAC58             <---------ANAC58                                                        <---------ANAC58             <---------ANAC46                                               --------->ATHB12                      <---------ANAC58 ---->At4g35610                              <---------WOX13(1)                     <---------LBD16<- ---TGA1                 <----------DOF2<---------At4g35610                <------ZmHOX2a(2)      --- -----At4g35610---------->DOF2       <-------TEIL       <---------ANAC46  --------->ARR11(3)      <-- ---HVH21   --------->ANAC46     ------>ZmHOX2a(1)   <---------MYB52(1)   <---------ARR11(3)  <------   ctatctatctatatacccaaagagtcgctttgttcctgattcatcagattgattcgtttcgttttctctgagtgaagatcgaaaatggcggacactagtc  11248200                                               <---------CCA1(2)                                    <------MYB46(1)                                    <------MYB83                                    ----------->GT1                                   --------->MYB59                             <---------------AGL15                             --------------->AGL15                             ----------------->AGL1                            ----------------->AG                            ==============================================MADS_MADS                            <-----------------AG       <------ZmHOX2a(1)    <-----------------AGL2 -------ZAT2                <-----------------AGL3 -------->RAV1(2)           ----------------->AGL3 -------O2                  ----------------->AGL2                                       --------->ANAC55(2) --------LBD16              <-----------------AGL1        <---------------AGL15          <---------ANAC58 ------>At4g35610           ----------------->AGL1   <----------DOF2      --------->YAB1 <---------ANAC58 -------At4g35610          --------->ZAT18   <---------ANAC58         <---------ANAC46   <---------ANAC46 -----HVH21                <---------ZAT18   <---------ANAC58      ----------->HVH21     <---------ANAC55(2)   acctggagaggatgggaagagaactcaagtgccctatttggtaaatcgcgtctctctttgctcaattttgtgacgagcataaaccctgatttcgtattgt  11248300                                                                                                <----                                     <---------AHL20(2)        <---------At4g35610           <-------                                    <---------AHL20(2)         --------->ZAT2             <----------                       <---------ANAC58                        <---------ZAT2      <---------At4g35610                       <---------ANAC46                        --------->At4g35610 --------->ZAT14                 <-----------GT1    --------->AHL20(2) --------->ATHB12            <---------ZAT14        ------->TEIL------->GAMYB  --------->YAB1     <---------YAB1        --------->AHL20(2)  <----     <---------ATHB12  <---------ANAC58     ---------->ID1     <------NtERF2<---------AHL20(2)  <----   ctgactaatgaatctcgtttaactgccttggtaacaattttaatttgtttttttttgttattggcagcttgagtctatataattctgcagtttcactttc  11248400                                <---------MYB52(1)                                ------>ZmHOX2a(1)                           <----------DOF2                          <---------DAG2                    <---------------AtSPL3                    <---------------AtSPL8 <-----------GT1    --------------->AtSPL8 -----ANAC46        --------------->AtSPL3                          <---------ATHB12 ---DOF2         --------->ANAC58                   <---------ARR14(2)                  <-------MYC3 -GT1    ------->TEIL   ------->TEIL       <----------DOF2        --------->WOX13(1)    ------->MYC3 -----ANAC58     --------->ANAC58       ---------->ID1  <---------YAB1           --------->ICU4 -----ANAC58   <---------AtLEC2--------->TOE2(3)    --------->ARR14(2)    ---------->DOF2  <---------ARR11(3)   gtgtaaccatgtattttgcaagtaagtacctttccttagtttgttctttcttcgtattctcatttcatcaatctttaaaagtaatgaacacatggtcttc  11248500                --------->ZAT14                                                                   ---                <---------ZAT14                                                     <----------DOF2              --------->REM1(2)                                                   <-------TEIL   <---           <---------ANAC58                                                   <---------------AtSPL3           <---------ANAC58                                                   <---------ZAT6    <----           <---------ANAC46   --------->YAB1           ----------->GT1        --------------->AtSPL8   <---------GLK1(1)   --------->GLK1(1)           ------>ZmHOX2a(1)          --------------->AtSPL3 --------->ATHB12 ----------->GT1               ---------->ID1                <---------------AtSPL8   tcttgatttcagtgcgtgtatagtgaaatctatgaaaatggatgctacttgtcctgtttgtaaaatcccttaccatcgtagaggtactttctcttgctct  11248600  Previous    Next  AGI:  At4g21065.1    Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40380.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11245965    to: 11247818    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g21070.1    Description:  ATBRCA1 (BREAST CANCER SUSCEPTIBILITY1); ubiquitin-protein ligase. similar to ATBARD1/BARD1 (BREAST CANCER ASSOCIATED RING 1), transcription coactivator [Arabidopsis thaliana] (TAIR:AT1G04020.1); similar to ATBARD1/BARD1 (BREAST CANCER ASSOCIATED RING 1), transcription coactivator [Arabidopsis thaliana] (TAIR:AT1G04020.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO40381.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain BRCT; (InterPro:IPR001357); contains InterPro domain BRCA1; (InterPro:IPR011364); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 11248089    to: 11252735    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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