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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                          ------->GAMYB
             --------->At4g35610
             <---------At4g35610
             <---------ZAT2                                                <----------DOF2
           --------->MYB46(3)                      --------->YAB1    --------->YAB1
 <-----------GT1         --------->MYB46(3)       <---------YAB1  --------->WOX13(1)
-->At4g35610 --------->ZAT2             ---------->DOF2         <---------ATHB12
>YAB1    ----------->RAV1(1)      <---------YAB1--------->YAB1 --------->ANAC46  <----------DOF2
 
caataaacaatccaacagctgcaatgtaacgaccattttgattcaaagcagtgatcatactgttccaaacaatcacatctttctctttcaattcatcaaa  10507700
                                              <---------HSFC1(2)
                         --------->ARR14(2)   --------->HSFC1(2)
                       --------->LBD16        --------->HSFB2a(1)
                      --------->LBD16  --------->TOE2(3)
                      <---------TOE1(2)<-----------TGA1
          <---------ARR11(3)    --------->At5g28300         <---------At4g35610
          --------->ARR11(3)    --------->LBD16             --------->At4g35610      <---------ZAT14
          --------->ARR14(2)   --------->TOE2(3)           ------->TEIL              --------->ZAT14
          <---------ARR14(2)   ----------->GT1<---------HSFB2a(1)<---------ARR11(3) <-----------HVH21
        ----------->ARR10<---------ARR14(2)<---------At4g35610   --------->ARR11(3)--------->TGA1a
  --------->ANAC58   --------->LBD16   <-----------HVH21<---------REM1(1)        <---------ALFIN1
  --------->ANAC58   <---------LBD16  --------->ANAC46 --------->ARR11(3)      --------->AtMYB61
 
cagacacgaagaagatactaactccccggttctaccgtaaaacgtcagaagcttcgaagatgtagctaaatcttggagtaaaccacacttcagagcgaaa  10507800
                                            ------>ZmHOX2a(2)
                                           <------ZmHOX2a(2)
                                          --------->ARR14(2)
                                          <---------AGP1
                                          <---------ARR14(2)
                                          --------->ARR11(3)
                                          <---------ARR11(3)
                                          <-----------ARR10
         --------->HSFB2a(2)           <---------TOE2(3)
         <---------HSFB2a(2)         ---------->DOF2
         <---------LBD16          --------->YAB1
         ------>ZmHOX2a(1)       <---------YAB1         <---------ANAC55(2)
     --------->ANAC58          --------->YAB1     <-------TEIL      --------->DAG2                 <
     --------->ANAC58     --------->ZAT14<------ZmHOX2a(1)         ---------->DOF2     ------>ZmHOX2a(1)
 
caatggacactcctcggagtctctgtctctgttctcatcataaaggatctaagtacatctcgtaagaacataaagctcgactccatagtcctattctctc  10507900
                                                                                                  --
                                                                                               -----
                                                                                               <----
                                                                     <---------ANAC46          <----
                                                                 <-----------HVH21             -----
                                                                --------->ALFIN1               <----
                                                                <-----------RAV1(1)            -----
                                                --------->MYB52(1) <---------ANAC46            -----
                                        --------->LBD16       <---------bZIP60(2)             <-----
                                      <---------LBD16         <---------ANAC46                <-----
                                     --------->MYB52(1)    ----------->HVH21                  ------
 --------->ANAC58                   --------->MYB52(1)   <---------ANAC58                   --------
 --------->ANAC46                   <---------ARR14(2)   <---------ANAC58                -----------
 --------->ANAC58                   --------->ARR14(2)   <---------ANAC46              --------->ZAT14
-----------RAV1(2)              <------ZmHOX2a(1)      <------ZmHOX2a(1)               <---------ZAT14
 
tctcaggcaattcgtcgaacaggttatggacaataggagtaaccggagacaaaacagaggacgtgaagtgtcgcttatgttttctcttactgaagtaata  10508000
------->YAB1
--->HAHB4
-----ICU4                                                                                      <----
----HAHB4                                                                                      -----
---->ATHB51                                                                                ---------
----ATHB1           <---------GLK1(1)                                                     <---------LBD16
---->ATHB12         --------->GLK1(1)                                                     --------->HSFB2a(2)
---->YAB1       <------ZmHOX2a(1)                                        ---------->DOF2  <---------HSFB2a(2)
----ATHB51     ----------->GT1                                   --------->LBD16         <---------LBD16
----YAB1    <------NtERF2                                      <---------LBD16           <---------ANAC46
--->ICU4   --------->LBD16                                  ----------->HVH21           <---------LBD16
->YAB1     <---------RAP2.6(3)                            --------->ANAC55(2)        <----------DOF2
>GT1     <---------LBD16                                  <---------ANAC55(2)   <-----------RAV1(2)
 
attagaacaatagccggaaggagaattccagcgagaaattgaatgcctaagagagtcgattatgtgaccggaacaataaagtctcaggcttttcggggaa  10508100
                                               --------->RAP2.3(1)
                                               <------NtERF2
                                              <---------ATERF1(1)
                                             <---------ATERF1(2)
                                             --------->RAP2.3(2)
                                             --------->ATERF1(2)
                                             --------->RAP2.3(3)
                                             <---------DEAR3(1)
                                             --------->DEAR3(1)
                                            --------->RAP2.3(1)
                                            --------->ORA47(2)
                                            --------->DEAR3(2)
                                            --------->ERF1
                                            --------->DEAR4(2)
                                            <---------LBD16
                                            --------->ATERF1(1)
                                            --------->RAP2.6(1)
                                            --------->RRTF1(1)
                                            <------NtERF2
                                           <---------RRTF1(1)
                                           <---------ATERF1(1)
                                           <---------RAP2.6(1)
                                           ------>NtERF2
                                           <---------RAP2.3(1)
                                           <---------DEAR4(2)
                                           <---------ERF1
                                           --------->ABI4(2)
                                          --------->DEAR3(1)
                                          <---------DEAR3(1)
                                         --------->ERF1
                                         --------->DEAR4(2)
                                         --------->RAP2.3(1)
                                         --------->RAP2.6(1)
                                         --------->RRTF1(1)
                                         --------->ATERF1(1)
                                         <------NtERF2
                                        ------>NtERF2
                                        <---------ATERF1(1)
                                       --------->ANAC46
                                  <---------ARR14(2)                             <---------AHL20(1)
                                  --------->ARR14(2)                             --------->AHL20(1)
                                <---------DEAR3(2)                               <---------AHL20(2)
                                <---------MYB46(3)                               --------->AHL20(2)
                               <---------DEAR3(1)                          <---------ANAC58
                             ------------>AtMYB77 ---------->DOF2          <---------ANAC46
   <---------ARR11(3) --------->MYB46(3)--------->LBD16                    <---------ANAC58        -
   --------->ARR11(3)------>MYB46(1)  <---------LBD16                  <------------CBF            -
-----GLK1(1)         ------>MYB83<-------GAMYB------>NtERF2      --------->TOE2(2) <------------CBF<
---->GLK1(1)        ----------->RAV1(1)--------->LBD16    ----------->GT1 --------->MYB59     ------
>LBD16    <-----------GT1   <---------DEAR3(1)--------->LBD16    --------->TOE1(2)--------->ATHB12<-
 
atcgtagaacttcttaccatcaccaacaacatcggcggtttcccggcgccggcgaaagagcatgtaaaactacgaattgggtattttattgggcctacgt  10508200
                                                       <----------ID1
                                                   <------------CBF
                                                 <---------AHL20(2)             --------->AHL20(2)
                                                 --------->AHL20(2)             <---------AHL20(2)
         <---------DAG2                      --------->ATHB12                  --------->AHL20(2)
         <----------DOF2       <----------DOF2  --------->AHL20(2)          --------->ATHB12
 <------------CBF             <---------DAG2<---------ATHB12                <--------ATHB1
-------->AHL20(1)      <------------CBF     --------->ICU4                 --------->ICU4
-------->ARR11(3)    --------->ARR11(3)     <---------YAB1             ------------>CBF
---------AHL20(1)    <---------AHL20(1)    <---------TOE2(3)     --------->TOE2(3)    <---------LBD16
--->TOE2(3)          --------->AHL20(1)   --------->YAB1    ---------->DOF2<---------ATHB12       --
----------TBP       <---------CCA1(2) <----------DOF2<---------ICU4    <------ZmHOX2a(2)         ---
 
tatatattggggctttttctcttatatattgggccttttctcttttaatgatttaattgtgacaaaagccttagatcaatgatttaatttggggattaaa  10508300
                                                                                            ------->TEIL
                                                                                          --------->ZAT14
                                                                                        ------------
                                                                                       --------->SPL7
                                                                                     <---------SPL1(2)
                                                                                    <---------ANAC58
                                                                                    --------->ANAC55(2)
                                                                                    <---------ANAC58
                                                                                    <---------ANAC55(2)
                                                                                   --------------->AtSPL3
                                                       ----------->GT1            <------ZmHOX2a(2)
                          --------->MYB52(1)         --------->ICU4              <---------ARR11(3)
                      --------->ZAT6              --------->AHL20(2)             --------->ARR14(2)
                    -------->HAHB4                <---------AHL20(2)             <---------ARR14(2)
                    --------->YAB1               <---------WOX13(1)              --------->AGP1 <---
                   <---------YAB1              --------->ATHB12                  <---------GLK1(2)
        ---------->DOF2--------->YAB1          ----------->GT1                --------->HSFB2a(2)---
 <---------ICU4  --------->YAB1                --------->YAB1    --------->AHL20(2)------>ZmHOX2a(2)
------->YAB1    <---------AHL20(2)            --------->ICU4     <---------AHL20(2)<-------TEIL-----
-------->GT1   --------->AHL20(2)         <---------YAB1  <-----------GT1     <---------HSFB2a(2)<--
 
ctgataatttcaaaagcatataataatactaatggttaagagttgatgaatgattaattagtaactaattaaaaatgtctcccagatccgtactgtaccc  10508400
                     --------->ARR14(2)
                     <---------ARR14(2)
                  <---------ANAC58
         ---------->DOF2                                                                           -
       --------->LBD16                                   ----------->GT1                           -
       --------->ANAC46                                  <---------ICU4                            <
      <---------HSFB2a(2)                           <---------AHL20(2)                            --
      --------->HSFB2a(2)------------>CBF          --------->YAB1                             <-----
--->AtSPL8 --------->ANAC58                --------->LBD16                             <--------HAHB4
--------HVH21 <------------CBF            --------->ANAC46         ---------->ID1      --------->ATHB12
------>DOF5.7(2)  <---------ANAC46        --------->LBD16<---------MYB46(3)           <---------ATHB12
---->ANAC46--------->ANAC58              --------->HSFB2a(2)   <---------DAG2        ------->TEIL <-
-------MYB52(1)   <---------ANAC58       <---------HSFB2a(2)   <----------DOF2    <---------YAB1----
 
gttacctctcccgaaagcattgcctatattcaatgtttcatgttcccgaaactatattaatggttactttttcgttttattcgatatgaatcatttgatt  10508500
        <---------DAG2
        <----------DOF2
  <---------ICU4
  --------->YAB1
  -------->HAHB4
 <---------YAB1
 --------->ICU4                              <---------AHL20(2)
-------->YAB1                               --------->AHL20(2)
------->HAHB4                       --------->ARR14(2)
---------ICU4                       --------->MYB52(1)                ---------->DOF2
------->ICU4                     --------->ANAC55(1)   <---------DOF5.7(2)         <----------DOF2
----WOX13(1)                     --------->ANAC46  <---------ANAC46--------->TOE2(3)
--------ATHB51  <----------DOF2  --------->ANAC55(2) <---------MYB52(1)    ------->TEIL         <---
----->YAB1   <-----------GT1     <---------ANAC55(2) --------->DOF5.7(2) <---------ZAT18     <------
 
aataatgatcactttttttcttttgttttaagaaacacataactgcattaaatgtcgttaactacatgtttcttaatgcacattgactttctattttgac  10508600
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AGI:  At4g19220.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63740.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 10505277    to: 10508132    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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