AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                                                                          <---------AHL20(1)
                                                                                          --------->AHL20(1)
                                              --------->AHL20(1)                          --------->AHL20(2)
                                              <---------ARR11(3)                          <---------AHL20(2)
                                              --------->ARR11(3)                      <---------AHL20(2)
                                              <---------AHL20(1)                      --------->AHL20(2)
               --------->ANAC58               --------->AHL20(2)                     <---------AHL20(2)
           ----------->GT1    <-----------GT1 <---------AHL20(2)                     --------->AHL20(1)
 ---------->DOF2    --------->YAB1           --------->AHL20(2)                      --------->AHL20(2)
---------GT1   --------->ANAC58          --------->AHL20(2)                     --------->YAB1   <--
 
ttaccaaagaagaaatgtaagaaacataacatttaacaaaattttaaaatatattgactaacaatttgacccaaaaaaaactatcaaatttaataaaata  10481400
         --------->YAB1
        <---------YAB1                       <---------ZAT14
      --------->YAB1                         --------->ZAT14
     <---------YAB1           --------->MYB46(3)
   --------->YAB1      <----------DOF2 --------->YAB1               <---------DEAR3(1)
  <---------YAB1    <-----------GT1   <---------YAB1              <-----------HVH21
--------->YAB1      ---------->ID1<---------DAG2                 --------->ZAT2              -------
--------DOF2       <-----------GT1<----------DOF2      ---------->DOF2<------NtERF2        <--------
 
cttttatgattatcatagtttttttccttttcaacaactttataatactgtagtggctcaaagaaaccaggtcggagaaattgttcacaaacgagataat  10481500
                                                                                                  --
                                                                                                 ---
         <---------ARR11(3)                                            <---------ARR11(3)        ---
         <---------AHL20(1)                                            --------->ARR11(3)      -----
-->AHL20(2)                              <---------YAB1      --------->AHL20(2)            <------ZmHOX2a(1)
-ARR11(3)--------->AHL20(1)      ---------->DOF2       <---------At4g35610               <---------TOE2(3)
 
atacaaattcaaaatatttcgatgaaacatttttgtcaaagttgatgaatagttttgcagcacataaaatacaagataattcgtctgatatttaggaaaa  10481600
        <---------TOE1(2)
        <XXXXXXXXXXXXXXXXXXXXMIR4239                                         <------ZmHOX2a(1)
 <---------YAB1                                                          ---------->DOF2
------->AHL20(1)                                                         --------->MYB52(1)
------>YAB1                                                            --------->MYB46(3)
------>AHL20(2)   --------->YAB1                                      ------->TEIL               ---
---->AHL20(2)     <-----------GT1                               --------->TOE1(2)      --------->At4g35610
 
taatattatcgtatgtgaaaataacaatatagacaaaccaatatttgtagattagaacttcacataaactacgaaccaaaggattttagtagcttcacat  10481700
                                                                        --------->ANAC58
                                                                        <---------ALFIN1
                                                                        --------->ANAC46
                                                                        --------->ANAC58
                                                                      ----------->RAV1(1)
                                                                      <---------ALFIN1
                                                                   --------->PCF2    --------->At4g35610
                                                             <---------AHL20(2)      <---------At4g35610
        --------->GLK1(2)                                   --------->AHL20(2)   --------->ANAC58
        <---------ARR11(3)       <---------AHL20(2)      --------->AHL20(2)      --------->ANAC58
        <-----------ARR10       --------->AHL20(2)       <---------AHL20(2)   ------->GAMYB        -
        --------->ARR11(3)      <---------AHL20(2)      --------->AHL20(2)   <---------ALFIN1      -
    --------->YAB1         ------------>CBF             <---------AHL20(2)  --------->ZAT14     *TSS
------->DOF2         ---------->DOF2   <---------YAB1   --------->AHL20(1)--------->ANAC46 <--------
 
caaagaataaaaatctaagtttcacaaagaaacaattaaatgatttttgattttgaaaatttaataaatagccccacacaacacactcatcttccttcac  10481800
       --------->ALFIN1
      ------->MYC3                                                             <---------GLK1(2)
      <-------MYC3                                                          <---------ALFIN1
-------->TOE2(3)    ----------->GT1                                       ------>ZmHOX2a(1)
-------->TOE1(3)  ---------->DOF2                          <<<<<<<<<TBF1 --------->ANAC46
---HVH21      ---------->DOF2 ---------->DOF2           <<<<<<<<<TBF1------>ZmHOX2a(1)
 
agccttaaacgtggagccaaagaaagtaaaaacaaaaggagagcaatggactctgtttcttcttcttccttcctctcctccacattctctcttcatcact  10481900
                   ------>ZmHOX2a(1)
              =================HOX2a_HOX2a
              =========================HOX2a_HOX2a
              ------>ZmHOX2a(2)
             ==========================HOX2a_HOX2a
             =============HOX2a_HOX2a
             ==================HOX2a_HOX2a
             <------ZmHOX2a(2)
            <---------ARR14(2)
            --------->ARR11(3)
            <-----------ARR10
            --------->ARR14(2)
            <---------ARR11(3)                       <------NtERF2
          --------->DEAR3(1)                       <---------DEAR3(1)
         <------NtERF2                            --------->ATERF1(1)
        <---------ATERF1(1)                      <-----------HVH21
        --------->ABI4(1)                        <---------ATERF1(1)
        --------->LBD16                         --------->RAP2.3(3)
        ------>NtERF2                           --------->RRTF1(3)
       --------->RAP2.3(2)                      --------->DEAR3(1)
       --------->ATERF1(2)                      --------->RAP2.3(2)
       <---------ATERF1(2)                     --------->ATERF1(1)
       --------->DEAR3(1)                      --------->RAP2.3(1)
       <---------DEAR3(1)                     --------->LBD16<---------KAN4(1)                   ---
       --------->RAP2.3(3)                    ------>NtERF2  --------->HSFB2a(1)              ------
      --------->ATERF1(1)                     <---------ATERF1(1)       --------->YAB1       <------
      --------->DEAR4(2)                     --------->ANAC46<---------HSFC1(2)              <------
      --------->ERF1                         --------->DEAR3(1)        <---------ATHB12      -------
      --------->RAP2.3(1)            <-----------ARR10       --------->KAN4(1)             ---------
      --------->ORA47(2)             <---------ARR11(1)      --------->HSFC1(2)   --------->ANAC58
     <---------RAP2.3(1)           --------->LBD16<------NtERF2      --------->WOX13(1) ----------->RAV1(1)
     <---------ATERF1(1)        ------>ZmHOX2a(1)------>NtERF2--------->KAN4(2)   --------->ANAC58
    --------->ANAC46    ------>ZmHOX2a(1)   <---------LBD16  <---------HSFB2a(1)  --------->ANAC46
 
ctcttcttcgccgccgatcttcctctcctactctcctccgtatcaactccgccgtcgtcgaagaacgttctccaatcacaaacccaagcgacaacaatga  10482000
                                      <---------ALFIN1
                                 --------->WOX13(1)                ------>NtERF2
                               --------->MYB46(3)                 --------->DEAR3(1)
                             ------>MYB46(1)                      <---------ETT(1)
                             ------>MYB83                     <---------HSFB2a(1)
     <---------MYB52(2)    ------->GAMYB                      --------->HSFC1(2)          --------->At4g35610
--->ZmHOX2a(2)             <---------MYB59                    <---------HSFC1(2)          <---------At4g35610
--->YAB1            --------->ZAT14 --------->YAB1     <---------ALFIN1                 --------->MYB46(3)
---YAB1           --------->ANAC46 <---------ATHB12    --------->AtMYB61              ----------->RAV1(1)
---ATHB12         --------->ANAC58------>MYB83         --------->DEAR3(1)          --------->ANAC58
-->ICU4           --------->ANAC58------>MYB46(1)     --------->MYB46(3)           --------->ANAC46
>YAB1--------->MYB46(3)--------->MYB46(3)--------->TOE2(3)    --------->HSFB2a(1)  --------->ANAC58
 
tcgtcgtaacaaacccaaaacactccacaaccgaaccaatcacaccttagtctcatcaccaccgaaactccgaccagaaatgactctcgcaacagctctc  10482100
                                                       --------->WRKY38(1)
                                                 =================HOX2a_HOX2a
                                    <---------ALFIN1   --------->WRKY12
                                   --------->MYB46(3) <---------MYB52(1)
                                  <------ZmHOX2a(2)  <-------GAMYB
                           <-------TEIL          ------>ZmHOX2a(1)
                         ------->MYC2       --------->ANAC46
     <-----------HVH21   <-------MYC2       --------->ANAC58
    --------->DEAR3(1)   <-------MYC3       --------->ANAC58
 <---------ALFIN1        ------->MYC3   <-----------HVH21  ====================HOX2a_HOX2a      ----
 --------->DEAR3(1)   <---------ALFIN1 --------->AtMYB61   ------>ZmHOX2a(2)                    <---
 --------->AtMYB61 --------->YAB1 ======================HOX2a_HOX2a          --------->YAB1------>ZmHOX2a(1)
--------->MYB46(3) <---------ICU4--------->ARR14(2) <---------ANAC46    ------>ZmHOX2a(1)-----------
 
ttcaccaccgtcgaagatgtaatcaacacgttcatcgatccaccttcacgtccttccgttgatccaaaacatgtcctctctgataacttcgctcctgtcc  10482200
                                   <---------ZAT18
                                 --------->ANAC58                     --------->ANAC46
                                 --------->ANAC46                     --------->ANAC55(2)
                                 --------->O2                         <---------ANAC55(2)
                    ----------------------->TaNAC69(2)       ------>NtERF2
            ----------->RAV1(1)  --------->bZIP60(2)      ------->GAMYB            <---------ARR14(2)
   --------->ZAT2  ----------->GT1 --------->ZAT14       --------->ANAC46   ------->GAMYB
   --------->At4g35610           --------->ANAC58      --------->MYB52(1)--------->MYB52(1)
-->ZmHOX2a(1) --------->MYB46(3)<---------LBD16     <---------ANAC55(2) ----------->HVH21
------HSFB2a(2)------->GAMYB   <---------ALFIN1     --------->ANAC55(2)--------->LBD16     <--------
>RAV1(2) ------>ZmHOX2a(1)<---------ATHB12      <-----------HVH21----------->ARR10 --------->ARR14(2)
 
tcgacgagcttcctccaacagactgtgaaatcatccacggcactcttccactgtcacttaacggcgcttacatccgtaacggtccaaatccacagtttct  10482300
<- Previous    Next ->

AGI:  At4g19170.1   
Description:  NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4). Identical to Probable carotenoid cleavage dioxygenase 4, chloroplast precursor (CCD4) [Arabidopsis Thaliana] (GB:O49675); similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar to carotenoid cleavage dioxygenase 4 [Osmanthus fragrans] (GB:ABY60887.1); similar to carotenoid cleavage dioxygenase 4a [Citrus clementina] (GB:ABC26011.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96278.1); contains InterPro domain Carotenoid oxygenase (InterPro:IPR004294)
Range:  from: 10481797    to: 10483868    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version