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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(1)
--------->
AHL20(1)
--------->
AHL20(1)
--------->
AHL20(2)
<---------
ARR11(3)
<---------
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
--------->
ANAC58
--------->
AHL20(2)
<---------
AHL20(2)
----------->
GT1
<-----------
GT1
<---------
AHL20(2)
--------->
AHL20(1)
---------->
DOF2
--------->
YAB1
--------->
AHL20(2)
--------->
AHL20(2)
---------
GT1
--------->
ANAC58
--------->
AHL20(2)
--------->
YAB1
<--
ttaccaaagaagaaatgtaagaaacataacatttaacaaaattttaaaatatattgactaacaatttgacccaaaaaaaactatcaaatttaataaaata
10481400
--------->
YAB1
<---------
YAB1
<---------
ZAT14
--------->
YAB1
--------->
ZAT14
<---------
YAB1
--------->
MYB46(3)
--------->
YAB1
<----------
DOF2
--------->
YAB1
<---------
DEAR3(1)
<---------
YAB1
<-----------
GT1
<---------
YAB1
<-----------
HVH21
--------->
YAB1
---------->
ID1
<---------
DAG2
--------->
ZAT2
-------
--------
DOF2
<-----------
GT1
<----------
DOF2
---------->
DOF2
<------
NtERF2
<--------
cttttatgattatcatagtttttttccttttcaacaactttataatactgtagtggctcaaagaaaccaggtcggagaaattgttcacaaacgagataat
10481500
--
---
<---------
ARR11(3)
<---------
ARR11(3)
---
<---------
AHL20(1)
--------->
ARR11(3)
-----
-->
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
<------
ZmHOX2a(1)
-
ARR11(3)
--------->
AHL20(1)
---------->
DOF2
<---------
At4g35610
<---------
TOE2(3)
atacaaattcaaaatatttcgatgaaacatttttgtcaaagttgatgaatagttttgcagcacataaaatacaagataattcgtctgatatttaggaaaa
10481600
<---------
TOE1(2)
<XXXXXXXXXXXXXXXXXXXX
MIR4239
<------
ZmHOX2a(1)
<---------
YAB1
---------->
DOF2
------->
AHL20(1)
--------->
MYB52(1)
------>
YAB1
--------->
MYB46(3)
------>
AHL20(2)
--------->
YAB1
------->
TEIL
---
---->
AHL20(2)
<-----------
GT1
--------->
TOE1(2)
--------->
At4g35610
taatattatcgtatgtgaaaataacaatatagacaaaccaatatttgtagattagaacttcacataaactacgaaccaaaggattttagtagcttcacat
10481700
--------->
ANAC58
<---------
ALFIN1
--------->
ANAC46
--------->
ANAC58
----------->
RAV1(1)
<---------
ALFIN1
--------->
PCF2
--------->
At4g35610
<---------
AHL20(2)
<---------
At4g35610
--------->
GLK1(2)
--------->
AHL20(2)
--------->
ANAC58
<---------
ARR11(3)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ANAC58
<-----------
ARR10
--------->
AHL20(2)
<---------
AHL20(2)
------->
GAMYB
-
--------->
ARR11(3)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
ALFIN1
-
--------->
YAB1
------------>
CBF
<---------
AHL20(2)
--------->
ZAT14
*
TSS
------->
DOF2
---------->
DOF2
<---------
YAB1
--------->
AHL20(1)
--------->
ANAC46
<--------
caaagaataaaaatctaagtttcacaaagaaacaattaaatgatttttgattttgaaaatttaataaatagccccacacaacacactcatcttcct
tcac
10481800
--------->
ALFIN1
------->
MYC3
<---------
GLK1(2)
<-------
MYC3
<---------
ALFIN1
-------->
TOE2(3)
----------->
GT1
------>
ZmHOX2a(1)
-------->
TOE1(3)
---------->
DOF2
<<<<<<<<<
TBF1
--------->
ANAC46
---
HVH21
---------->
DOF2
---------->
DOF2
<<<<<<<<<
TBF1
------>
ZmHOX2a(1)
agccttaaacgtggagccaaagaaagtaaaaacaaaaggagagca
atggactctgtttcttcttcttccttcctctcctccacattctctcttcatcact
10481900
------>
ZmHOX2a(1)
=================
HOX2a_HOX2a
=========================
HOX2a_HOX2a
------>
ZmHOX2a(2)
==========================
HOX2a_HOX2a
=============
HOX2a_HOX2a
==================
HOX2a_HOX2a
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ARR11(3)
<-----------
ARR10
--------->
ARR14(2)
<---------
ARR11(3)
<------
NtERF2
--------->
DEAR3(1)
<---------
DEAR3(1)
<------
NtERF2
--------->
ATERF1(1)
<---------
ATERF1(1)
<-----------
HVH21
--------->
ABI4(1)
<---------
ATERF1(1)
--------->
LBD16
--------->
RAP2.3(3)
------>
NtERF2
--------->
RRTF1(3)
--------->
RAP2.3(2)
--------->
DEAR3(1)
--------->
ATERF1(2)
--------->
RAP2.3(2)
<---------
ATERF1(2)
--------->
ATERF1(1)
--------->
DEAR3(1)
--------->
RAP2.3(1)
<---------
DEAR3(1)
--------->
LBD16
<---------
KAN4(1)
---
--------->
RAP2.3(3)
------>
NtERF2
--------->
HSFB2a(1)
------
--------->
ATERF1(1)
<---------
ATERF1(1)
--------->
YAB1
<------
--------->
DEAR4(2)
--------->
ANAC46
<---------
HSFC1(2)
<------
--------->
ERF1
--------->
DEAR3(1)
<---------
ATHB12
-------
--------->
RAP2.3(1)
<-----------
ARR10
--------->
KAN4(1)
---------
--------->
ORA47(2)
<---------
ARR11(1)
--------->
HSFC1(2)
--------->
ANAC58
<---------
RAP2.3(1)
--------->
LBD16
<------
NtERF2
--------->
WOX13(1)
----------->
RAV1(1)
<---------
ATERF1(1)
------>
ZmHOX2a(1)
------>
NtERF2
--------->
KAN4(2)
--------->
ANAC58
--------->
ANAC46
------>
ZmHOX2a(1)
<---------
LBD16
<---------
HSFB2a(1)
--------->
ANAC46
ctcttcttcgccgccgatcttcctctcctactctcctccgtatcaactccgccgtcgtcgaagaacgttctccaatcacaaacccaagcgacaacaatga
10482000
<---------
ALFIN1
--------->
WOX13(1)
------>
NtERF2
--------->
MYB46(3)
--------->
DEAR3(1)
------>
MYB46(1)
<---------
ETT(1)
------>
MYB83
<---------
HSFB2a(1)
<---------
MYB52(2)
------->
GAMYB
--------->
HSFC1(2)
--------->
At4g35610
--->
ZmHOX2a(2)
<---------
MYB59
<---------
HSFC1(2)
<---------
At4g35610
--->
YAB1
--------->
ZAT14
--------->
YAB1
<---------
ALFIN1
--------->
MYB46(3)
---
YAB1
--------->
ANAC46
<---------
ATHB12
--------->
AtMYB61
----------->
RAV1(1)
---
ATHB12
--------->
ANAC58
------>
MYB83
--------->
DEAR3(1)
--------->
ANAC58
-->
ICU4
--------->
ANAC58
------>
MYB46(1)
--------->
MYB46(3)
--------->
ANAC46
>
YAB1
--------->
MYB46(3)
--------->
MYB46(3)
--------->
TOE2(3)
--------->
HSFB2a(1)
--------->
ANAC58
tcgtcgtaacaaacccaaaacactccacaaccgaaccaatcacaccttagtctcatcaccaccgaaactccgaccagaaatgactctcgcaacagctctc
10482100
--------->
WRKY38(1)
=================
HOX2a_HOX2a
<---------
ALFIN1
--------->
WRKY12
--------->
MYB46(3)
<---------
MYB52(1)
<------
ZmHOX2a(2)
<-------
GAMYB
<-------
TEIL
------>
ZmHOX2a(1)
------->
MYC2
--------->
ANAC46
<-----------
HVH21
<-------
MYC2
--------->
ANAC58
--------->
DEAR3(1)
<-------
MYC3
--------->
ANAC58
<---------
ALFIN1
------->
MYC3
<-----------
HVH21
====================
HOX2a_HOX2a
----
--------->
DEAR3(1)
<---------
ALFIN1
--------->
AtMYB61
------>
ZmHOX2a(2)
<---
--------->
AtMYB61
--------->
YAB1
======================
HOX2a_HOX2a
--------->
YAB1
------>
ZmHOX2a(1)
--------->
MYB46(3)
<---------
ICU4
--------->
ARR14(2)
<---------
ANAC46
------>
ZmHOX2a(1)
-----------
ttcaccaccgtcgaagatgtaatcaacacgttcatcgatccaccttcacgtccttccgttgatccaaaacatgtcctctctgataacttcgctcctgtcc
10482200
<---------
ZAT18
--------->
ANAC58
--------->
ANAC46
--------->
ANAC46
--------->
ANAC55(2)
--------->
O2
<---------
ANAC55(2)
----------------------->
TaNAC69(2)
------>
NtERF2
----------->
RAV1(1)
--------->
bZIP60(2)
------->
GAMYB
<---------
ARR14(2)
--------->
ZAT2
----------->
GT1
--------->
ZAT14
--------->
ANAC46
------->
GAMYB
--------->
At4g35610
--------->
ANAC58
--------->
MYB52(1)
--------->
MYB52(1)
-->
ZmHOX2a(1)
--------->
MYB46(3)
<---------
LBD16
<---------
ANAC55(2)
----------->
HVH21
------
HSFB2a(2)
------->
GAMYB
<---------
ALFIN1
--------->
ANAC55(2)
--------->
LBD16
<--------
>
RAV1(2)
------>
ZmHOX2a(1)
<---------
ATHB12
<-----------
HVH21
----------->
ARR10
--------->
ARR14(2)
tcgacgagcttcctccaacagactgtgaaatcatccacggcactcttccactgtcacttaacggcgcttacatccgtaacggtccaaatccacagtttct
10482300
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AGI:
At4g19170.1
Description:
NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4). Identical to Probable carotenoid cleavage dioxygenase 4, chloroplast precursor (CCD4) [Arabidopsis Thaliana] (GB:O49675); similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar to carotenoid cleavage dioxygenase 4 [Osmanthus fragrans] (GB:ABY60887.1); similar to carotenoid cleavage dioxygenase 4a [Citrus clementina] (GB:ABC26011.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96278.1); contains InterPro domain Carotenoid oxygenase (InterPro:IPR004294)
Range:
from: 10481797
to: 10483868
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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