Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->YAB1                                       ------>ZmHOX2a(1) --------->ANAC58                                   ------->TEIL          --------->ANAC58             <---------WOX13(1) <---------YAB1         <--------P           --------->ATHB12   --------->YAB1     --------->MYB52(1)          <---------YAB1 <---------At4g35610    <---------WRKY12 --------->YAB1    <-------TEIL    -- ------>TOE1(1)          --------->At4g35610    <---------WRKY38(1)   <---------ATHB12    <----------DOF2   tcgaacatgaagatgattggctgatttagctctcatgaatcctagtttgatcaacgggtaagcacaatgacaatgaagagccaagtccatagctttaatt  10304500                                                            --------->At4g35610         --------->LBD16                                    <---------At4g35610        --------->LBD16                                     --------->ANAC46       *TSS       <---------LBD16        ----------->HVH21     <----------DOF2                --------->AHL20(2)   <----------DOF2            <---------ETT(1) ---------->ID1           ---------->DOF2 ---->ZmHOX2a(1)     <---------GLK1(2)     <----------DOF2<-----------GT1   <----------ID1  ---------   cctgactttccctgaaaatcagagattgtcttccgacagttctcactttggcctctttcttcacctcacaacaaaaaagaaacaaatatttatccccaaa  10304600                                   --------->ANAC58                                   --------->ANAC58                                   --------->ANAC46                      ------------>CBF                    <---------AHL20(2)      --------->TOE2(3)        --------->At4g35610       <---------YAB1             --------->At4g35610    ------>MYB46(1)   ----------------->AGL2           --------->YAB1            <---------ANAC58    ------>MYB83 >>>>>>>GRF7<---------At5g28300 --------->ZAT18                  <---------ANAC58    -------->P<-----------HVH21<---------At4g35610    <---------YAB1           <---------ANAC46    <- >LBD16<----------DOF2----------------->AGL3    <---------ZAT18      <----------DOF2----------->GT1==   aaatccaacctttatatgtcagggtccaattacagctacgcaaaaacttgtggaccataataaatggctaactttgaagttttgggtgctaaaaaaacac  10304700                               <---------PCF2                               --------->ZAT18                             <---------ZAT18                             --------->ZAT18                            --------->ALFIN1                          --------->TGA1a                          <---------O2                          --------->O2                          <---------TGA1a                              <----------DOF2                   =================MYC_MYB                --------->TOE1(3)                    <---- ---------DOF2     ------->GAMYB                           --------->TOE2(2)                    ----- ===================================bZIP_DOF               --------->TOE1(2)        --------->AHL20(2)   actttcaagtttttgaaacaacgctctcaagtgggctctgattttcacaaggagacttaaaccttcgaaacaacttttactgaagataaaatccacttac  10304800                           <---------ANAC58                     <---------DAG2              >>>>>>>>>>E2Fb              >>>>>>>>>>E2Fa              >>>>>>>>>>>>>>>E2Fb              >>>>>>>>>>>>>>>E2Fa              >>>>>>>>>>E2Fc              >>>>>>>>>>E2Fe              >>>>>>>>>>E2Fd              >>>>>>>>>>>>>>>E2Fd              >>>>>>>>>>>>>>>E2Fe              >>>>>>>>>>>>>>>E2Fc                                              <-----------GT1              >>>>>>>>>>>>>>>E2Ff                                             <---------AHL20(2)              >>>>>>>>>>E2Ff                                                ------->TEIL             <-----------GT1                                          ----------->TGA1       <---------YAB1<----------DOF2                                  ----------->HVH21      ------------>CBF     <---------ANAC58      --------->CCA1(2)  <------MYB83<-----------GT1  <---------ICU4 --------->LBD16            <------ZmHOX2a(1)       <------MYB46(1) -----HSFB2a(2) --------->LBD16 --------->At4g35610                 <---------MYB46(3) ---->HSFB2a(2)<---------LBD16  <---------At4g35610             <-----------RAV1(1)               <--   agaagcattacaattttcccgcgctttttccgtctgatgagttagaggaagataagagaaatggcgatgttggtgacgaatttatcttcttcaagcttct  10304900                                              <---------ANAC46                                             <------NtERF2                                           <---------DEAR3(1)                                          --------->At4g35610                                       --------->At4g35610             ==============================HOX2a_HOX2a             ------>ZmHOX2a(1)      <------ZmHOX2a(2)        ------>ZmHOX2a(1)          <---------ARR11(3)        ===================================HOX2a_HOX2a     <-----------GT1              <---------GLK1(1)             --------->ANAC55(2)    <-----------GT1               --------->GLK1(1)             <---------ANAC55(2) -------MYB52(1)                <------ZmHOX2a(1)   <---------ZAT6                          <--------   gttttttttcctctcctcatttacaaaaccagaaggagatcagaagcggcgttagagttcgaaaatatgtgattttcaatagagcctcgttgagaacagt  10305000                                                                   --------->ARR14(2)                                                                   --------->GLK1(2)                                                                   <---------ARR14(2)                                                                  <---------GLK1(2)                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                                 --------->GLK1(1)                                                                ----------->ARR10                                                             <---------ANAC46                                                             <---------ANAC55(2)                  ---                                                            <---------LBD16        <---------ARR14(2)                                                     --------->ANAC58      --------->ARR14(2)    ----                                                     --------->ANAC58      <---------ARR14(2)    ----                                                     --------->ANAC46      --------->GLK1(2)    -----                                   <-----------------------TaNAC69(2)--------->TOE1(2)       --------                               ------>ZmHOX2a(2)   --------->ZAT6--------->HSFB2a(1)         --------  <---------GLK1(2)        <---------YAB1  --------->At4g35610--------->LBD16      --------->GLK1(2) -ZAT14                 <----------DOF2--------->MYB52(1)  --------->MYB52(1)  --------->LBD16  <----   atcagattgtgttgattcgattacaacttttgatcgaagcgtaacagatgcgaacactcaattacggagattctgcgaatcagggaatctagagaacgcc  10305100                 <---------HSFB2a(2)              <---------ARR14(2)              --------->GLK1(2)              --------->ARR14(2)              <---------ARR11(1)              ------->TEIL           <---------ANAC55(2)           <---------ANAC58                                            <---------YAB1       <----------DOF2                      <---------DAG2           --------->At4g35610 -------->HVH21  --------->HSFB2a(2)        <----------DOF2          <---------At4g35610 ----->LBD16 <---------ARR14(1)          <---------ARR11(3)        <---------ZAT14 ----->At5g28300<---------LBD16       <---------HSFB2a(2)          --------->ZAT14 ------>GT1<---------ANAC58           --------->HSFB2a(2)     <---------At4g35610            -------- ->ANAC58  <---------ANAC46 --------->ARR11(3)                --------->At4g35610      ---------->DOF2 ->ANAC58  --------->ANAC55(2)        --------->LBD16         <---------ZAT2    <---------ARR11(3) -----ANAC46 <---------CCA1(2)      ------>ZmHOX2a(2)         --------->ZAT2   <---------GLK1(1)-----   gtgaaacttctttgcgtatctggaaaatgggatattgatccgagaactttatgctctgttcttcagctctgtgctgattcgaaatctctcaaagatggta  10305200                                             --------->ARR14(2)                                             <---------ARR14(2)                                  ----                                         <-------TEIL                                            ----                                        --------->ARR14(1)                                  ---------                 <---------ANAC58      <---------GLK1(2)                                --------->CCA1(2)                 <---------ANAC58      --------->ARR11(1)                              <---------ARR14(2) --->GT1   <----------DOF2          <---------WOX13(1)                               ----------->ARR10 ----->DOF2<---------DAG2        <---------YAB1      <------ZmHOX2a(2)            <---------ANAC46   aagaagttgataactttattcgtggtaatgggtttgtgatagattcgaatttgggatcaaaactctctcttatgtatacaaattgtggagatttgaaaga  10305300                                                                            ----------->GT1                                                                            --------->At4g35610                                                                        <---------ARR11(3)                                                                        --------->ARR14(2)                                                        <---------YAB1  --------->GLK1(2)                               ---------->DOF2       <---------YAB1     --------->ARR11(3)                            <---------HSFB2a(2)  --------->ARR11(3)     <---------ARR14(2)                            --------->HSFB2a(2)  <---------AHL20(1)  <---------------AGL15        --------->ALFIN1  <------ZmHOX2a(2)      --------->AHL20(1) ----------------->AGL1      <---------ANAC46   --------->ARR11(3)--------->HSFB2a(2)  <---------ANAC58 ----->ANAC58     ----------->GT1          --------->HSFC1(1)   <---------ANAC58 ----->ANAC58    <---------TOE2(3)         <---------HSFB2a(2) --------->At4g35610 <---------ZAT14 ->DOF2 <---------ZAT6 <---------YAB1     <---------LBD16      --------->ZAT2     <----------DOF2   agcaagtagagtgttcgatgaggttaagatcgagaaagcattgttctggaatattttgatgaatgagcttgcaaaatctggtgactttagtgggagtatt  10305400  Previous    Next  AGI:  At4g18740.1    Description:  transcription termination factor. similar to unnamed protein product [Vitis vinifera] (GB:CAO48031.1); contains InterPro domain Rho termination factor, N-terminal; (InterPro:IPR011112) Range:  from: 10303468    to: 10304583    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g18750.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G03580.1); similar to putative pentatricopeptide repeat protein [Gossypium hirsutum] (GB:AAT64030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48030.1); similar to putative pentatricopeptide repeat protein [Gossypium hirsutum] (GB:AAT64016.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 10304861    to: 10307581    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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