Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------------AGL15                           ----------------->AGL2                           ----------------->AGL3                          ------->TEIL ------->O2            --------->ANAC58 --------O2            --------->ANAC58 ------->TGA1a         --------->ANAC46             --------->YAB1 ------------>AGL1  <---------ZAT14        ------>ZmHOX2a(2) ------------>AG    --------->ZAT14       <------ZmHOX2a(2) -ANAC58            <---------ZAT18    <---------HSFB2a(1)<---------ATHB12 -ANAC58       <-------TEIL--------->MYB46(3)    --------->YAB1                 ------>NtERF2   cacatcggtatataacatacagtacacgaaccattagaagaacgatcgccaaaataatcaataaaccaatgctgaattttgaggccatccttgagtaaac  10081700                     ------>ZmHOX2a(2)                    --------------->AtSPL3                    --------------->AtSPL8                    <---------------AtSPL3                   <---------ARR11(3)         --------->TOE2(3)             ------>ZmHOX2a(1)               ----------->GT1             ===============HOX2a_HOX2a------>ZmHOX2a(2)             =================================HOX2a_HOX2a             ================================HOX2a_HOX2a          ------>MYB46(1)             <------ZmHOX2a(2)          ------>MYB83  --------->SPL7--------->CCA1(2)       --------->HSFC1(2)            --------->AGP1                                              ----       <---------HSFB2a(1)           --------->ARR11(3)                                <------ZmHOX2a(2)       --------->HSFB2a(1)           <---------ARR11(3)                              --------->At4g35610       <---------HSFC1(2)     <----------DOF2<----------ID1--------->YAB1            <---------At4g35610   acagttgcaaccttcctccatgatcgtacttccttttgagatctaaaacgtcaaaatccaagcgtaatggagaaacaactcaaaatcagatcacaaacaa  10081800                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                   --                   --------->ANAC58                                                               ---     --------->TOE2(3)                                             --------->DAG2                 <--    ----------->GT1--------->ANAC58                                <---------TOE2(3)             ----  --------->ARR14(2)                              <-------TEIL --------->YAB1        --------->AHL20(2)  ------->TEIL  --------->ZAT2       --------->ANAC58   --------->ANAC46   --------->ANAC58     -----  <---------ARR14(2)                 --------->ANAC58 <---------ALFIN1     --------->ANAC58    ------ ----->MYB52(1) <---------ZAT2     --------->MYB52(1)<---------REM1(2)--------->ALFIN1--------->AHL20(2)   aacgaatcgtcaaaatcgagctcgaaattagacaaaaaaacgaaattgaagattcaacacggcgattataaggtgggaagaaacaaaataaaaaactcac  10081900                   --------->ALFIN1                   ----------->HVH21                  --------->ATERF1(1)                 <---------MYB46(3)            <---------LBD16         --------->ARR14(2)         <---------ARR14(2)         --------->GLK1(2)   <---------ANAC46----------->TGA1  <------NtERF2 <---------DEAR3(1)  --------->ATERF1(1) ------>NtERF2 <------NtERF2 <---------ATERF1(1)  <---------ANAC46                           --------->ALFIN1 ---------->HVH21<---------DEAR3(2)                          <---------At5g28300 ---------DEAR3(1)<------NtERF2--------->MYB52(1)        <---------MYB46(3)           <---------MYB52(1) -------->DEAR3(1)--------->At5g28300                --------->ATHB12                <---------SPL7 ------->RAP2.3(1)<-----------HVH21<------ZmHOX2a(1)--------->AHL20(2)           <---------ALFIN1 ------>LBD16 ------>NtERF2 --------->ANAC58        <---------AHL20(2)          --------->MYB46(3) -------ATERF1(1)<---------ATERF1(1)                --------->AHL20(1)         <---------At5g28300 ----->DEAR3(1)<---------ABI4(1) <---------TOE2(3)  <---------YAB1            <-----------GT1     <-- ---->DEAR3(2)--------->LBD16  ---------->DOF2     --------->AHL20(2)     <----------DOF2       ----- --->MYB52(1)<---------LBD16--------->ANAC58      *TSS<------------CBF    ===========================   cggcgacggagaatcccggcggtgacgggaacgtaaaggattagagaattgaattttattggttacggtgtgtcttctttttaccaccgttcgatttgga  10082000                           ------->PIF5                           ------->MYC2                           ------->MYC3                           <-------MYC3                           <-------MYC2                       --------->MYB46(3)                     <---------ARR14(2)                     --------->ARR14(2)                  <---------bZIP60(1)                  --------->ANAC55(2)                  --------->bZIP60(1)                  <---------ANAC55(2)                 <------NtERF2               --------->ALFIN1              <-------MYC3<---------TGA1a              <-------MYC2--------->bZIP60(2)              ------->MYC2<---------ANAC55(2)              ------->MYC3=================bZIP_DOF              ------->MYC4=================bZIP_DOF              ------->PIF5--------->O2              <-------MYC4<---------O2             <---------TGA1a               <---------ANAC46             --------->ANAC46              <---------ANAC58             --------->O2 --------->TGA1a  <---------ANAC58             ==============================bZIP_DOF             ==============================bZIP_DOF        ----------->GT1             <---------O2 --------->ANAC46<---------MYB46(3)             --------->TGA1a----------->HVH21   <---------ARR14(2)                         --------->TOE1(3)             =======================bZIP_bZIP   --------->ARR14(2)                         --------->TOE2(3)             --------->ANAC55(2)<----------DOF2 ------->TEIL                <---------AHL20(2)  <---------ANAC58<---------ANAC46        --------->MYB55(2)                --------->AHL20(2)  -----  <---------ANAC58<---------ANAC58   <---------YAB1--------->AtLEC2    ------------>CBF  <---------ARR11(3)  <---------ANAC46<---------ANAC58 <---------CCA1(2)       --------->ANAC55(2)  <---------AHL20(2)  < ----------CBF<-------PIF5--------->ANAC55(2)--------->ALFIN1      <---------ANAC58      --------->ARR11(3) ---->ARR11(3)-------->ABF1<-------PIF5<----------DOF2     <---------ANAC55(2) <---------AHL20(2)   - ======================bZIP_DOF<---------ANAC46<---------TCP16(2)  <---------ANAC58 <---------AHL20(2)   tattgcttagaatacacgtggcgtaaccacgtgacttttatctttgggtggacctgcaaacatgtaattccttcccaattttttattttaaaatcttaaa  10082100                                       <---------MYB52(1)                                      <------MYB83                                      <------MYB46(1)                              --------->ANAC46                      <---------ARR14(2)                      --------->ARR14(3)                      <---------ARR14(3)                      --------->ARR14(2)                               --------->ANAC46             <                      <---------ARR11(3)                             <-----------GT1        <--------                      --------->ARR11(3)                       <---------RVE1(1)      --------->ANAC58      XXXXXXXXXXXXXXXXXXXX>MIR2937    <---------DEAR3(2)       <---------CCA1(1)      --------->ANAC58 ----->DOF2--------->ICU4    <---------ZAT18                  <---------ARR11(3)      --------->ANAC46 ---------ARR11(3)  ----------->ARR10<---------MYB46(3)       --------->ARR11(3)    ---------->DOF2 < -------->ARR11(3) *TSS      --------->ZAT18          --------->AHL20(2)     --------->TOE2(3)   ----   aagatactaagaactgatgaagaagatattgtacaccagtcggtacttagaaaaaaaaaaatgagattttttcacaaaacctccattgaagcaacttttg  10082200                           <---------ICU4             --------->ANAC55(2)                                                     ------>ZmHOX2a(1)            <---------TOE2(3)   <----------ID1                                      --------->TOE1(2) <----------DOF2       <---------AHL20(2)                                          ----------->RAV1(2) ---------ANAC58       --------->AHL20(2)                                       --------->HSFB2a(1) --DOF2     <---------TOE1(3)----------->TGA1                                   <---------HSFB2a(1) ---------ANAC58  <---------MYB59     ------->TEIL                            <---------GLK1(2) ------>ID1 --------->MYB59--------->YAB1        --------->GLK1(2)           <------ZmHOX2a(1)   tagctttcttcgtttaggtatctaattaaacatgacgacgaagctatcgagcttctgtttcttaacccatggattagcaggaatctcctgcgagagagaa  10082300                                                               ----------->HVH21                                                           --------->At4g35610  <---------ANAC58                                                           <---------At4g35610  <---------ANAC58                  <-----------GT1                   <---------ANAC58            <---------ANAC46     <---------ARR11(3)                             <---------ANAC58     ------->MYC3     --------->ARR11(3)                             <---------ANAC46     <-------MYC3   catggaagttctcgtcgatttttctatctcccttctcgtcgattagtttctacttcgtgtaagatgcgacaacaacgtggtttcgagtgagttttttttt  10082400                                                         <---------ANAC58                                                   <---------TOE2(3)                                                <---------WOX13(1)                                  ------->TEIL--------->ATHB12                              --------------->AtSPL8     <---------ANAC58           <-----------RAV1(1)--------------->AtSPL3   ------->TEIL     <---------GLK1(1)        <---------------AtSPL8--------->ANAC55(2) ---------->ID1           --------->GLK1(2) <---------WOX13(1) <----------DOF2     ---------->DOF2   tttgtcgatttctgtgttggggtttgagaatttatgtaccaattcgattgatttatgtaacttggcatttttgaattttgcattataaagttttgttttt  10082500                                             <---------ICU4                                             --------->YAB1                                            <---------AHL20(2)                                            <---------YAB1                                     ------->MYC2               --------->ATHB12                                     <-------MYC3     --------->ATHB12                           ----        <---------ZAT6               ------->MYC3  --------->YAB1                          --------->YAB1   <----------DOF2                 ------->TEIL --------->YAB1 <-------TEIL               <---------YAB1 <---------At4g35610            ----------->HVH21<---------ARR11(3)                  <------ZmHOX2a(1) --------->At4g35610   <---------YAB1<-------MYC2--------->ARR11(3)                 --------->ZAT18   ctcagctttagagttatggtgaatgctcatagatgtgaacgtgtttataattatcttgatttagattcatttgtatgagtttggagaggactatgagaat  10082600  Previous    Next  AGI:  At4g18230.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO66912.1); contains InterPro domain Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969) Range:  from: 10080363    to: 10081950    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g18240.1    Description:  ATSS4/SSIV (STARCH SYNTHASE 4); transferase, transferring glycosyl groups. similar to ATSS3 (STARCH SYNTHASE 3), starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G11720.1); similar to starch synthase IV [Triticum aestivum] (GB:ABD64538.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66915.1); similar to starch synthase, isoform V [Vigna unguiculata] (GB:CAB40375.1); contains InterPro domain Starch synthase catalytic region (InterPro:IPR013534); contains InterPro domain Glycogen/starch synthases, ADP-glucose type; (InterPro:IPR011835); contains InterPro domain Glycosyl transferase, group Range:  from: 10082119    to: 10087214    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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