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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
<--------
ATHB1
>>>>>>>>>>
AGL20
-------->
ATHB1
--------->
ATHB51
--------->
YAB1
--------->
ATHB12
<---------
ICU4
>>>>>>>>>>
AGL22
--------->
ARR11(3)
>>>>>>>>>>
AGL24
<---------
ARR11(3)
<---------
ATHB51
<---------
AHL20(2)
<---------
ATHB12
--------->
AHL20(2)
--------->
ANAC55(2)
<---------
HSFB2a(2)
<---------
ANAC58
----------------------->
TaNAC69(2)
--------->
HSFB2a(2)
<---------
ANAC58
<---------
CCA1(2)
--------
ATHB12
--------->
ICU4
--------->
ATHB51
<---------
ANAC55(2)
--->
MYB83
<-----------------
AGL3
--------->
AHL20(2)
<----------
DOF2
<---------
AHL20(2)
--->
MYB46(1)
<------
ZmHOX2a(2)
<---------
ANAC46
<-----------
GT1
<-------
TEIL
--------->
AHL20(2)
aatcttctcttctcgatcaataattggattttgctggtaaatgaattatttactatatatcttctttgatacgtctcttcttatttaaatgacataaaac
10065200
--------->
ICU4
<---------
YAB1
--------->
TOE2(3)
<---------
ICU4
--------->
ICU4
--------->
ANAC46
--------->
ANAC58
--------->
bZIP60(2)
--------->
O2
<---------
AHL20(2)
--------->
ANAC58
--------->
ZAT18
<---------
TGA1a
<---------
ZAT18
--------->
ARR11(3)
--------->
TGA1a
<---------
ANAC46
<----------
DOF2
--------->
YAB1
<-------
TEIL
<-----------
GT1
--------->
YAB1
----------->
HVH21
<----
aaatacaataatccaaattttaggcacgtcaacattattaactcttaagtggacataaataatctcactcttgacggtctttcaaaggtattgtattagc
10065300
--------->
AHL20(2)
<---------
CCA1(2)
<---------
AHL20(2)
<---------
DAG2
---------->
DOF2
--------->
YAB1
<----------
DOF2
------>
ZmHOX2a(1)
<---------
PCF2
<
--------->
GLK1(2)
--------->
TOE2(3)
--------->
TOE1(2)
<-----------------
AGL1
<-------
-----
AtLEC2
--------->
TOE2(3)
---------->
ID1
----------------->
AGL1
--------
atgaaattctatattaattcttaacatttacctttatcttgtttttgttcctaagaacgttttctaaaattctccaaaatgggcccaaaagtatgaaatc
10065400
--------->
ARR11(1)
---------->
DOF2
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
At5g28300
<---------
ARR14(2)
-----------
--------->
ZAT2
--------->
At5g28300
--------->
ANAC58
<------
NtERF2
<---------
At4g35610
<---------
DEAR3(1)
<--------
---------->
DOF2
--------->
DAG2
--------->
ZAT2
--------->
ARR14(2)
--------->
MYB52(1)
------------
CBF
---------->
DOF2
<-------
TEIL
--------->
ANAC58
----------->
GT1
--
GLK1(1)
----------->
GT1
<---------
O2
--------->
PCF2
--------->
ARR11(3)
------------>
MYB.PH3(1)
->
GLK1(1)
------>
ZmHOX2a(2)
----------->
HVH21
---------->
DOF2
<---------
DEAR3(1)
<-
caaattgagcccaaagttgtgatccagtgaaacgataaagctctcacgaggttcaagctcccacaagctcagatcgtgggcggtaaaagaaacggttaac
10065500
<---------
ICU4
<---------
AHL20(2)
<---------
AHL20(1)
<---------
HSFB2a(2)
--------->
AHL20(1)
--------->
HSFB2a(2)
--------->
ZAT14
--------->
HSFC1(1)
----------->
GT1
<---------
ZAT14
<---------
HSFC1(1)
--------->
YAB1
--------->
ANAC46
<---------
ANAC46
>
GT1
<-----------
GT1
--------->
AHL20(2)
---------->
DOF2
------
-
MYB52(1)
--------->
ICU4
<-----------
GT1
<-----------
GT1
--------->
DAG2
--------->
DAG2
-----------
CBF
<---------
AHL20(2)
--------->
AHL20(2)
---------->
DOF2
---------->
DOF2
-
taattgtaaaaaatgatttttttttttctacttcactaaaatattacagttttttttagcaaaagtaaaagtttcgagaaactctgaaaaagcagttttc
10065600
--------->
TOE1(3)
--------->
TOE2(3)
--------->
At4g35610
<---------
ANAC55(2)
<---------
ANAC46
--------->
DOF5.7(2)
<---------
MYB52(1)
<-----------
GT1
--------->
HSFC1(2)
------->
TEIL
--------->
HSFB2a(1)
<---------
ANAC46
<---------
HSFB2a(1)
<<<<<<<<<
TBF1
<------
ZmHOX2a(1)
<-------
TEIL
<---------
HSFC1(2)
<<<<<<<<<
TBF1
--------
------>
CBF
<-----------
HVH21
<---------
KAN4(2)
<-----------
GT1
------>
ZmHOX2a(1)
-------->
YAB1
------->
TEIL
----------->
GT1
----------->
RAV1(2)
<-----------
GT1
aatcttaggagcagtgtatgtgtcatgtacatcgag
atggagaattttcgttacctgaaatttttcttcttcttcatctttgtaatattatctccttctg
10065700
<------
ZmHOX2a(1)
<---------
ANAC58
<---------
TOE2(3)
----------->
GT1
<---------
ANAC58
--------->
AtMYB61
--------->
ANAC58
<---------
ANAC58
<---------
AtMYB61
<---------
ALFIN1
--------->
ANAC58
<---------
ANAC58
<----------
DOF2
----------->
RAV1(1)
--->
RAV1(2)
---------->
DOF2
--------->
LBD16
<---------
At4g35610
--------->
ANAC46
--
aagcaggaaatatagtagacaaaagctctgttttccttgttgatgtccgtagctttggtgctcgagctaatgaccacagagaccacaccaag
gttttttt
10065800
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
CCA1(2)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(3)
<-----------
GT1
--------->
ARR11(3)
--------->
WOX13(1)
<---------
AGP1
---------->
DOF2
--------->
AGP1
<---------
AHL20(2)
----------->
ARR10
--------->
AHL20(2)
-
--------->
TOE2(3)
<---------
At4g35610
--------->
At4g35610
<
----------->
RAV1(1)
<-------
TEIL
<---------
YAB1
--------->
ARR11(3)
<------
------->
ANAC46
<--------
P
----------->
GT1
<---------
At4g35610
---------->
DOF2
caaacaacattagatctgtgttttttgtttttgtttttggtagattcatctgtttagttacaataaatcagctaataacttgatgttttaaaag
gccttt
10065900
<---------
MYB46(3)
--------->
ANAC58
<------
MYB46(1)
---
--------->
ANAC58
<---------
MYB52(1)
<---
--------->
AtLEC2
<-------
GAMYB
--------->
ARR14(2)
<----------
ID1
<-----------
RAV1(1)
<---
-------->
At4g35610
--------->
YAB1
<---------
YAB1
--------->
ARR14(2)
<---------
ARR14(2)
---------
At4g35610
<---------
ATHB12
------->
TEIL
<---------
ARR14(2)
<---------
GLK1(2)
----
DOF2
---------->
DOF2
<---------
CCA1(2)
----------->
GT1
<------
MYB83
--------->
GLK1(2)
gtagcagcatgggacaaagcatgcaaatcatcttcaagctctgtgaatcttataatcccaagaggtgaattctctgttggttctctcagattctctggtc
10066000
--------->
ATHB12
<----------
DOF2
<---------
ANAC58
<---------
ZAT18
<---------
MYB52(1)
<-------
GAMYB
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
<---------
AHL20(2)
<-----------
RAV1(1)
--------->
AHL20(2)
------->
TEIL
--------->
GLK1(2)
<---------
ANAC46
<---------
TOE2(3)
<---------
ALFIN1
<----------
DOF2
<---------
ANAC58
--->
ZmHOX2a(1)
<---------
TOE1(3)
<---------
ARR11(3)
<---------
ANAC58
<-
------
ANAC58
<---------
TOE2(3)
--------->
ARR14(2)
<---------
ANAC58
-----
------
ANAC58
<-----------
HVH21
<-----------
GT1
<---------
ARR14(2)
<---------
ANAC46
<-----
cttgcactaatgtatccaatctcactgtccgagttaag
gtagttttatcaacactctccaaaatctgtctttgttgcgttgtgtgcttgatttaatgctt
10066100
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AGI:
At4g18180.1
Description:
glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] (TAIR:AT3G14040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47542.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050)
Range:
from: 10065637
to: 10067328
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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