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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                 <--------ATHB1
                 >>>>>>>>>>AGL20
                 -------->ATHB1
                 --------->ATHB51
                 --------->YAB1
                 --------->ATHB12
                 <---------ICU4
                 >>>>>>>>>>AGL22                      --------->ARR11(3)
                 >>>>>>>>>>AGL24                      <---------ARR11(3)
                <---------ATHB51          <---------AHL20(2)
                <---------ATHB12          --------->AHL20(2)       --------->ANAC55(2)
        <---------HSFB2a(2)  <---------ANAC58         ----------------------->TaNAC69(2)
        --------->HSFB2a(2)  <---------ANAC58        <---------CCA1(2)
--------ATHB12  --------->ICU4            --------->ATHB51         <---------ANAC55(2)
--->MYB83    <-----------------AGL3   --------->AHL20(2)    <----------DOF2      <---------AHL20(2)
--->MYB46(1)<------ZmHOX2a(2)<---------ANAC46 <-----------GT1     <-------TEIL   --------->AHL20(2)
 
aatcttctcttctcgatcaataattggattttgctggtaaatgaattatttactatatatcttctttgatacgtctcttcttatttaaatgacataaaac  10065200
                              --------->ICU4
                              <---------YAB1
                             --------->TOE2(3)
                            <---------ICU4
                           --------->ICU4
                      --------->ANAC46
                      --------->ANAC58
                      --------->bZIP60(2)
                      --------->O2                     <---------AHL20(2)
                      --------->ANAC58        --------->ZAT18
                      <---------TGA1a         <---------ZAT18                      --------->ARR11(3)
                      --------->TGA1a      <---------ANAC46                <----------DOF2
     --------->YAB1  <-------TEIL  <-----------GT1   --------->YAB1----------->HVH21           <----
 
aaatacaataatccaaattttaggcacgtcaacattattaactcttaagtggacataaataatctcactcttgacggtctttcaaaggtattgtattagc  10065300
          --------->AHL20(2)  <---------CCA1(2)
         <---------AHL20(2) <---------DAG2                                         ---------->DOF2
        --------->YAB1      <----------DOF2    ------>ZmHOX2a(1)              <---------PCF2       <
  --------->GLK1(2)        --------->TOE2(3)  --------->TOE1(2)      <-----------------AGL1 <-------
-----AtLEC2    --------->TOE2(3)           ---------->ID1            ----------------->AGL1 --------
 
atgaaattctatattaattcttaacatttacctttatcttgtttttgttcctaagaacgttttctaaaattctccaaaatgggcccaaaagtatgaaatc  10065400
                                                                                     --------->ARR11(1)
                                                                                 ---------->DOF2
                                                                      ------>ZmHOX2a(2)
                                                                     <------ZmHOX2a(2)    --------->At5g28300
                                                                    <---------ARR14(2)   -----------
                                                              --------->ZAT2  --------->At5g28300
                                                             --------->ANAC58 <------NtERF2
                                                    <---------At4g35610  <---------DEAR3(1)<--------
        ---------->DOF2          --------->DAG2     --------->ZAT2  --------->ARR14(2)--------->MYB52(1)
------------CBF                 ---------->DOF2 <-------TEIL --------->ANAC58----------->GT1
--GLK1(1)            ----------->GT1      <---------O2--------->PCF2--------->ARR11(3)------------>MYB.PH3(1)
->GLK1(1)          ------>ZmHOX2a(2)   ----------->HVH21   ---------->DOF2  <---------DEAR3(1)    <-
 
caaattgagcccaaagttgtgatccagtgaaacgataaagctctcacgaggttcaagctcccacaagctcagatcgtgggcggtaaaagaaacggttaac  10065500
                                     <---------ICU4
                                    <---------AHL20(2)
                                    <---------AHL20(1)                 <---------HSFB2a(2)
                                    --------->AHL20(1)                 --------->HSFB2a(2)
                            --------->ZAT14                            --------->HSFC1(1)
----------->GT1             <---------ZAT14                            <---------HSFC1(1)
--------->YAB1            --------->ANAC46                            <---------ANAC46
>GT1                 <-----------GT1--------->AHL20(2)         ---------->DOF2                ------
-MYB52(1)--------->ICU4 <-----------GT1 <-----------GT1   --------->DAG2             --------->DAG2
-----------CBF<---------AHL20(2) --------->AHL20(2)      ---------->DOF2            ---------->DOF2-
 
taattgtaaaaaatgatttttttttttctacttcactaaaatattacagttttttttagcaaaagtaaaagtttcgagaaactctgaaaaagcagttttc  10065600
                                                  --------->TOE1(3)
                                                  --------->TOE2(3)
                                                 --------->At4g35610
                                                 <---------ANAC55(2)
                                                 <---------ANAC46
                                              --------->DOF5.7(2)
                                              <---------MYB52(1)
                                          <-----------GT1
                                        --------->HSFC1(2)
                        ------->TEIL    --------->HSFB2a(1)
                   <---------ANAC46     <---------HSFB2a(1)       <<<<<<<<<TBF1
    <------ZmHOX2a(1)   <-------TEIL    <---------HSFC1(2)     <<<<<<<<<TBF1                --------
------>CBF       <-----------HVH21     <---------KAN4(2)   <-----------GT1                 ------>ZmHOX2a(1)
-------->YAB1------->TEIL         ----------->GT1----------->RAV1(2)                 <-----------GT1
 
aatcttaggagcagtgtatgtgtcatgtacatcgagatggagaattttcgttacctgaaatttttcttcttcttcatctttgtaatattatctccttctg  10065700
  <------ZmHOX2a(1)                                 <---------ANAC58                  <---------TOE2(3)
 ----------->GT1                                    <---------ANAC58           --------->AtMYB61
 --------->ANAC58              <---------ANAC58    <---------AtMYB61           <---------ALFIN1
 --------->ANAC58              <---------ANAC58  <----------DOF2      ----------->RAV1(1)
--->RAV1(2)      ---------->DOF2            --------->LBD16  <---------At4g35610 --------->ANAC46 --
 
aagcaggaaatatagtagacaaaagctctgttttccttgttgatgtccgtagctttggtgctcgagctaatgaccacagagaccacaccaaggttttttt  10065800
           ------>ZmHOX2a(2)
          <------ZmHOX2a(2)
          --------->CCA1(2)
         --------->ARR14(2)
         <---------ARR14(2)
         <---------ARR11(3)                                             <-----------GT1
         --------->ARR11(3)                                  --------->WOX13(1)
         <---------AGP1                                     ---------->DOF2
         --------->AGP1                                     <---------AHL20(2)
       ----------->ARR10                                    --------->AHL20(2)                     -
    --------->TOE2(3)                       <---------At4g35610   --------->At4g35610              <
 ----------->RAV1(1)                     <-------TEIL   <---------YAB1  --------->ARR11(3)   <------
------->ANAC46                      <--------P     ----------->GT1<---------At4g35610 ---------->DOF2
 
caaacaacattagatctgtgttttttgtttttgtttttggtagattcatctgtttagttacaataaatcagctaataacttgatgttttaaaaggccttt  10065900
                                                                          <---------MYB46(3)
                 --------->ANAC58                                         <------MYB46(1)        ---
                 --------->ANAC58                                       <---------MYB52(1)      <---
                 --------->AtLEC2                                      <-------GAMYB --------->ARR14(2)
       <----------ID1                                                 <-----------RAV1(1)       <---
-------->At4g35610      --------->YAB1          <---------YAB1  --------->ARR14(2)   <---------ARR14(2)
---------At4g35610     <---------ATHB12   ------->TEIL          <---------ARR14(2)   <---------GLK1(2)
----DOF2   ---------->DOF2               <---------CCA1(2) ----------->GT1<------MYB83--------->GLK1(2)
 
gtagcagcatgggacaaagcatgcaaatcatcttcaagctctgtgaatcttataatcccaagaggtgaattctctgttggttctctcagattctctggtc  10066000
                                                                                    --------->ATHB12
                                                                                  <----------DOF2
                                                                                 <---------ANAC58
                                                                              <---------ZAT18
                                                                          <---------MYB52(1)
                                                                         <-------GAMYB
                                                                        <---------ANAC58
                                                                        <---------ANAC46
                                                                        <---------ANAC58<---------AHL20(2)
                                                                   <-----------RAV1(1) --------->AHL20(2)
         ------->TEIL                                     --------->GLK1(2)<---------ANAC46
     <---------TOE2(3)                         <---------ALFIN1  <----------DOF2 <---------ANAC58
--->ZmHOX2a(1)                  <---------TOE1(3)         <---------ARR11(3) <---------ANAC58     <-
------ANAC58                    <---------TOE2(3)         --------->ARR14(2) <---------ANAC58  -----
------ANAC58          <-----------HVH21   <-----------GT1 <---------ARR14(2) <---------ANAC46 <-----
 
cttgcactaatgtatccaatctcactgtccgagttaaggtagttttatcaacactctccaaaatctgtctttgttgcgttgtgtgcttgatttaatgctt  10066100
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AGI:  At4g18180.1   
Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] (TAIR:AT3G14040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47542.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050)
Range:  from: 10065637    to: 10067328    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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