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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                       --------->LBD16
                      --------->ANAC58
                      <------NtERF2
                      --------->ANAC58
                     --------->At4g35610
                     ------>NtERF2
                     <---------At4g35610
                     --------->LBD16
                     <---------LBD16
                    <---------ANAC46
                    --------->DEAR3(1)
                   <------NtERF2
                   --------->ATERF1(1)
                  <---------ATERF1(1)
                  --------->ABI4(2)
                 ----------->HVH21
                 <---------DEAR3(1)
                --------->ATERF1(1)
               <---------DEAR3(2)
              --------->ETT(1)             ------>NtERF2
              <---------DEAR3(1)          --------->DEAR3(1)
              <---------DREB2C(2)     --------->SPL7
              <---------At1g77200    --------->MYB52(1)
              <---------DEAR4(1)    ------->GAMYB
    <---------YAB1------>NtERF2    <---------MYB52(2)                                         <-----
  <-----------GT1--------->ALFIN1  --------->MYB46(3)                            ------>ZmHOX2a(2)
-NtERF2     <-----------HVH21    --------->MYB52(1)                            --------->ARR14(2)
-->LBD16   <-----------RAV1(1)--------->ANAC58                 <---------TOE2(3)<------ZmHOX2a(2)
-LBD16 <------ZmHOX2a(2)      --------->ANAC58   --------->AHL20(2)            <---------ARR14(2)
 
gaatgttacgatcagtgtcggtgccgcggaatgaagcaacgaacgacgacgataaattgagttttttagattagactaaaccgatcggtataaggggtcg  9977800
                         --------->ARR14(1)
                       --------->ATHB12
                      <---------YAB1                                             <---------ANAC46
                      ----------->ARR10        --------->ATHB12                  <---------ANAC58
                  <------MYB83<---------MYB52(1)                                 <---------ANAC58
                  <------MYB46(1)             <---------YAB1                 <----------DOF2
                 --------->MYB111(1)      <---------TOE2(3)               ---------->ID1
                 --------->MYB46(2)      <-----------GT1              <----------DOF2
                 <---------AtMYB61   <----------DOF2       <------ZmHOX2a(1) <---------DAG2
                 --------->MYB59     ------>ZmHOX2a(1)   --------->MYB59  <-----------GT1
----MYB46(3)   <---------MYB52(1) ---------->ID1       --------->ICU4 <---------DAG2
 
atgatgcgattcgattcggtttggtatgattcggtttgtcctttttacgatgatgggaattaggaatcggatgctttttccttttcgtgtcttcgttttc  9977900
                                                                <---------AHL20(2)
                                                          <---------ANAC46
                                                       <---------MYB52(1)
                                                      <-------GAMYB
                                                     <---------ANAC58
                                ----------->GT1      <---------ANAC58
                         <---------ANAC46            <---------ANAC46                   --------->ANAC58
                   <---------TOE2(3)          <---------ANAC55(1)                       --------->ANAC58
         --------->YAB1  <---------ANAC58     --------->ANAC55(2)                  <----------ID1
      --------->YAB1     <---------ANAC58     <---------ANAC46 --------->ICU4 ----------->GT1
  <-----------GT1 <-----------GT1             <---------ANAC55(2)      <---------At4g35610
 
agaatttactaataagaaaattatcgtttcttgaatagaaaaaactattatgtgtttcgttgtgtaatgaattgagatgtctggttaagacaaacaatac  9978000
                                                                      --------->YAB1
                                                                  <---------AHL20(2)
                                                                  --------->AHL20(2)
                                                                 <---------AHL20(2)
                                                            --------->LBD16
                                                           --------->ANAC46
                                                           <---------HSFB2a(2)
                                          <---------LBD16  --------->ANAC55(2)       ----------->GT1
                  --------->ICU4          --------->SPL7  <---------LBD16    ----------->GT1
             --------->YAB1    <---------MYB52(1)       <---------ARR14(2) ----------->GT1    <-----
        <-------TEIL          <-------GAMYB  <---------MYB52(1)  --------->AHL20(2)  ---------------
       --------->CCA1(2)      <---------MYB52(1)        --------->ARR14(2)--------->DAG2      ------
      --------->ARR11(1)     ----------->GT1--------->LBD16--------->HSFB2a(2)    ------------------
      --------->ARR11(3)    <---------DEAR3(1)         <---------GLK1(1) ---------->DOF2    --------
 
aaggagaaagatacagtcgtaatgtttaaggccggttatttctggtccggcaatttgaatttccggaatttaattgtaaagtgaaaaacagaaaaaaaag  9978100
                                                   --------->ZAT14
                                                   <---------ZAT14
                                                 ------>ZmHOX2a(2)
                                                 xxxxxxxxxxxxxxxx>smallRNA(s)
                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)
                                                <---------At4g35610
                                                --------->At4g35610
                                               <xxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                     --------->WRKY12
                                  <xxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                 xxxxxxxxxxxxxxxx>smallRNA(i)
                             <xxxxxxxxxxxxxxxxsmallRNA(s)
                             <xxxxxxxxxxxxxxxxsmallRNA(i)
                        --------->LBD16       <xxxxxxxxxxxxxxxxsmallRNA(i)
                       ------->GAMYB ----------->HVH21
                     ------>MYB46(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                     ------>MYB83xxxxxxxxxxxxxxxx>smallRNA(s)
                     --------->MYB52(1)       <xxxxxxxxxxxxxxxxsmallRNA(s)
                     -------->P  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             <---------MYB59
                    <---------ALFIN1 --------->WRKY38(1)                          --------->ANAC58
                    --------->MYB52(1)  <xxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxsmallRNA(i)
                   <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(s)      ------->TEIL
-----ID1           ----------->HVH21<-----------HVH21                   <xxxxxxxxxxxxxxxxsmallRNA(s)
--------->ANAC81  <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    *TSS <------
----->GT1 <xxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxsmallRNA(si3)
------>ANAC81   --------->ZAT18xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ZAT6--------->ANAC58
-->DOF2---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(i) --------->At4g35610 <xxxxxxxxxxxxxxxxxsmallRNA(fl3)
 
aaaaaacaaaaaaaggaagggcccaaccgggttcgaaccggtgacctattgatctgcagtcaattgctctatcactgagctatggacccaatttgatatt  9978200
                                              <------ZmHOX2a(2)
                                             --------->ARR11(3)
                                             <---------ARR11(3)            <---------AHL20(2)
                                        <---------ANAC46                   --------->AHL20(2)
                                        <---------ANAC58               <---------YAB1
      ----------->GT1   ----------->TBP <---------ANAC58   <------ZmHOX2a(1)                  ------
------CBF    --------->YAB1    ---------->DOF2====================HOX2a_HOX2a      ---------->DOF2 -
 
gttcacattttgtaaatcatatagactatatatcaaaagtatttcgtagatcattttcaagaggaagaaatattcttataaattttaaaagaatgaaatg  9978300
        ----------->GT1         --------->ARR11(3)                --------->GLK1(1)            <----
  <---------At4g35610           <---------ARR11(3)        <----------DOF2                     ------
----->GT1    ---------->DOF2---------->DOF2            --------->ANAC58                       <-----
--------->DOF2        <---------YAB1                   --------->ANAC58                       <-----
 
tagaaagctcatggaaaaaagaattttgtttgaaaggtctctaacaattgagaaatgcaagcttttgggattttcatacatctgtaaacaaattgctgcg  9978400
                                                                                      <----------DOF2
                                                                                     <---------ANAC46
                                                                                     <---------ANAC58
                                                                          --------->ANAC58
                                                                          --------->ANAC46
                                                                          --------->LBD16
                                                                          --------->ANAC58         <
-------HVH21                                                             <---------HSFB2a(2)       -
--->bZIP60(2)                                                            --------->HSFB2a(2)       <
----ANAC58   <---------AHL20(2)                                        --------->PCF5<---------ANAC58
----ANAC58   --------->AHL20(2)                             ----------->GT1--------->LBD16         -
 
tcacatagtttttgattttaatctctgcatatttatggaattttgtttacataaacttttgaaatgtcaaaatggtcccgaaactattgcttttatagac  9978500
                                                                              <--------ATHB1
                                                                              --------->ATHB12
                                                                              -------->HAHB4
                                                                             <---------ATHB12
                                                                             <---------YAB1
                                                                             --------->ICU4
                       <---------WOX13(1)                                   <---------TOE2(3)
                     -------->HAHB4                                       <---------AHL20(2)
              --------->AtLEC2                        <---------AHL20(2)  --------->AHL20(2)
          <---------YAB1     <---------YAB1          --------->AHL20(2)  <---------ATHB12      <----
---------AHL20(1)    --------->ATHB12           <---------DAG2        ------------>ATHB5     -------
-------->ARR11(3)   --------->ICU4              <----------DOF2   <------MYB46(1)           --------
---------ARR11(3)   <---------YAB1             <---------ANAC58   <------MYB83<---------ICU4<-------
-------->AHL20(1)   <---------ATHB12           <---------ANAC58  --------->MYB59<---------WOX13(1)<-
 
aaaatattggatttttaatgcaaatgattgttatgacttctacataagttgctttatataatataagtttggtccaattaatgattgagaagaacatgat  9978600
                                                                        --------->ANAC58
                                                               <---------ARR11(3)
                                                               --------->ARR11(3)
                                                               --------->ARR14(2)              -----
                                                               <---------ARR14(2)              <----
                                                              <---------CCA1(2)                <----
                                                           --------->TOE2(3)                   -----
    <----------DOF2                                       <---------ANAC55(2)      --------->AHL20(2)
-----WOX13(1)                                             ----------->GT1        --------->TOE2(3)
-->ATHB12                             <---------AHL20(2) <---------TOE2(3)       --------->TOE1(3) -
->ICU4                     --------->MYB52(1)        --------->YAB1     --------->ANAC46   <------ZmHOX2a(1)
--YAB1               ---------->DOF2  --------->AHL20(2)--------->MYB52(1)       <----------DOF2  <-
--------GLK1(2)--------->YAB1      --------->TOE2(3)<---------YAB1      --------->ANAC58 <---------TOE2(3)
 
tgattctctttgcatatatcatatcaaaggtatcggaacattaaaataagactctataataacgtaaatcttcatacgaaaaaactttaaataaggaatt  9978700
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AGI:  At4g17970.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46600.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63429.1); contains InterPro domain Protein of unknown function UPF0005 (InterPro:IPR006214)
Range:  from: 9975420    to: 9977734    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At4g17975.1   
Description:  pre-tRNA. tRNA-Cys (anticodon: GCA)
Range:  from: 9978118    to: 9978189    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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