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Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                           <---------WOX13(1)
     <---------ANAC55(2)                                                  <------------CBF
     --------->ANAC55(2)                                                 --------->ATHB12
     --------->ANAC46                                                   <---------AHL20(2)
    <---------LBD16                                                     <---------YAB1
 <----------DOF2                                                   --------->AHL20(2)
--------->TOE2(3)               <---------MYB52(1)                 <---------AHL20(2)
--------->TOE1(3)          <---------ARR14(2)                 --------->ANAC58
----->TEIL      --------->AHL20(2)        <---------ZAT6      --------->ANAC58
------>P <------ZmHOX2a(2) --------->ARR14(2)         --------->YAB1<---------AHL20(2)        <-----
 
caacctttacggatcaaaatgaaatacccaaatccatttgttttagtgtttgataaatcagaatcacgaattaatttgattgagagagagcgattagaga  9779900
                                                                                    -------->ABF1
                                                                                    ------->MYC4
                                                                                    ------->MYC2
                                                                                    <-------MYC2
                                                                                    <-------MYC4
                                                                                    <-------MYC3
                                                                                    ------->MYC3
                                                                                   <--------ABF1
                                                                                   =================
                                                                                   =================
                                                                                   <---------ANAC55(2)
                                                                                   --------->ANAC55(2)
                                                                                   =================
                                                                                   <---------TGA1a
                                                                                   --------->O2
                                                                                   <---------O2
                                                                                   --------->TGA1a
                                                                                 <---------ALFIN1
                                                                               <-----------HVH21
                                                                               ----------->RAV1(1)
                                                                               <-----------------PIF3(1)
                          <------NtERF2                                       --------->ANAC58
                         --------->LBD16                                      --------->ANAC58
                   <------------CBF                                           --------->ANAC46
                  --------->CCA1(2)                                    --------->ZAT14
                 --------->ARR11(3)                                    --------->REM1(2)  ------>ZmHOX2a(1)
                 <---------ARR11(3)                                   ----------------------->TaNAC69(2)
      --------->MYB52(1)<---------ANAC58                   ----------->RAV1(1)----------->HVH21
     ---------->DOF2    <---------ANAC46                  --------->ANAC58  --------->ANAC58       <
    --------->AtMYB61   <---------ANAC58                  --------->ANAC46  --------->ANAC58      <-
----------------WRI1   <---------LBD16                    --------->ANAC58  --------->ANAC46     <--
 
gaagagaccaaagggagagagatattggcgggagagagagagagacagagagagatagaacacgacataaactgtgaagacgcgacacgtgtcctatttg  9780000
                                                                                             <------
                                                                                             -------
                                                                                             -------
                                                                                             -------
                                                                                             -------
                                                                                             -------
                                                                                  <---------O2
                                                                               =============MYC_MYB
                                                                               ------->GAMYB -------
                                                                               --------->DREB2C(2)
                                                                               --------->DEAR3(1)
                                                                               ----------->HVH21
                                                                              --------->MYB46(3)
                                                                              --------->DEAR3(2)
                                                                           --------->ANAC58 --------
                                                                           --------->ANAC46 <-------
                                                                           --------->ANAC58 <-------
                                                                           ----------->HVH21<-------
                                                                         --------->ANAC46  <--------
                                                                    --------->PCF2<---------bZIP60(2)
                                                                   <-----------TCP11(1) --------->MYB55(2)
                                                                   ------>NtERF2  --------->TGA1a
                                                                   <---------ATERF1(1)  <---------MYB46(3)
           ---------->DOF2                                        --------->DEAR3(1)   <---------DEAR3(1)
          ---------->DOF2                      <----------DOF2    <---------DEAR3(1)   --------->ALFIN1
   ---------->DOF2                      ----------->HVH21       --------->MYB52(1)<---------ANAC46
=====================bZIP_DOF          --------->At5g28300     ----------->HVH21  --------->O2
==============bZIP_DOF          --------->AtLEC2      --------->ANAC58   <---------ALFIN1 --------->ALFIN1
======================bZIP_DOF  --------->ANAC58      --------->ANAC58 <---------ALFIN1<---------AtMYB61
---------TOE2(3)                --------->ANAC58   <---------SPL7--------->ATERF1(1)--------->ALFIN1
--------At5g28300    ----------->RAV1(1)--------->WRKY38(1)   --------->DEAR3(2)  <---------TGA1a
---------GT1--------->DAG2  <-----------HVH21  =============================================bZIP_DOF
 
ttacggtagagccaaaaggcagaacaacagttgtcatgccacggtgaccactttggtacgcatgaagcgacggcccacacgaccgacgtggtggtgggcc  9780100
                                                                                             <------
                                                                                           <--------
---PCF2                                                                                    <--------
-->TCP20                                                                                  <---------AHL20(2)
-->TCP15(1)                                                                               --------->AHL20(2)
-->TCP16(1)                                                                               --------->YAB1
-->ZAT18            --------->YAB1                                                      <---------AHL20(2)
-->PCF5            <---------YAB1                                                       --------->AHL20(2)
-->TCP11(2)      <---------ICU4                 <---------AHL20(2)                     --------->YAB1
--->TCP11(1)     --------->YAB1               <----------DOF2         --------------->AtSPL8 <------
--TCP23         --------->ICU4           ------>NtERF2              --------->YAB1  --------->AHL20(2)
--TCP16(2)      <---------ATHB12        <---------ZAT18     <---------YAB1          <---------AHL20(2)
--TCP15(2)      <---------YAB1          --------->DEAR3(1) --------->AHL20(2)   --------------->AGL15
-MYB46(3)  --------->ANAC55(2)        --------->At4g35610  <---------AHL20(2)   ====================
 
caaattataggtttatgtaatcataataagactgtgtcattagccgactcttttattgatatttttataaatcatagtactatctatttatattaatatt  9780200
                                                       <---------ANAC58
                                              <-------PIF4        <---------------AGL15
                                              ------->MYC2        --------------->AGL15
                                              --------->TOE1(2)  <-----------------AGL1
                                              <-------PIF5 <---------ANAC55(1)
                                              ------->MYC3 =================================bZIP_DOF
                                              <-------MYC2 <---------ANAC58
                                              ------->PIF5 <---------ANAC46
                                              <-------MYC4 --------->ANAC55(2)
                                              ------->PIF4 <---------ANAC55(2)
                                              <-------MYC3 =================================bZIP_DOF
                                             ========================bZIP_bZIP
                                             <---------TGA1a     <-----------------AG
                                             --------->TGA1a --------->ALFIN1
                                             --------->O2  <---------TGA1a
                   --------->MYB46(3)        <---------O2  <---------ANAC58       --------->DAG2
                 --------->YAB1              ===============================================bZIP_DOF
            ------------>CBF     ----------->GT1       <---------ANAC58          ---------->DOF2
     ==================================================bZIP_DOF  ----------------->AGL1
    ---------->DOF2<---------MYB52(2)       ------------>OsbHLH66----------------->AG
------CBF  ----------->RAV1(1) ========================bZIP_DOF  ----------------->AGL2
-TOE2(3)--------->PCF2         ========================bZIP_DOF  <-----------------AGL3
-YAB1---------->DOF2 --------->MYB52(1)    <------------OsbHLH66 ----------------->AGL3 <---------ARR14(2)
---ICU4<-----------TCP11(1)    ---------->DOF2------->MYC4 --------->TGA1a<------ZmHOX2a(1)*TSS  <--
==================================================================================MADS_MADS---------
 
gatatactaaaggcccacaataacaaacggcccataaagaaaattcacacgtgcgatggcatacgtgtgccaaaataggaagcgaaaagcagataaggct  9780300
                                                                                            --------
                                                         <----------CDC5                    --------
                                                <---------At4g35610                         --------
                                             <---------At4g35610  --------->YAB1          --------->CCA1(2)
                                          <---------At4g35610  <----------DOF2<-----------RAV1(2)
--------DOF2              --------->LBD16 --------->At4g35610--------->At4g35610    --------->AHL20(2)
>DAG2        --------->ANAC46 --------->MYB52(1)--------->At4g35610          ------>ZmHOX2a(1)------
 
cttttccactgtcttccctccattttctccgagtaactgagagtttgctgcagctatggcgatgagctttcatcgtcttcctcaggtttaaatatacgaa  9780400
                                                                                                 ---
                               <---------YAB1                                                   <---
                             <---------ICU4                                                   ------
                             --------->ATHB12                                              ---------
                             --------->ATHB51                                              ---------
     <---------GLK1(1)      <---------YAB1                                                 ---------
->ANAC58                    --------->ICU4                                          --------->GLK1(1)
->ANAC46                 <---------AHL20(2)                                        --------->ARR14(2)
->ANAC58           --------->ANAC55(2)                                           --------->LBD16----
---->DOF2        <-----------GT1      <---------YAB1                     <---------YAB1   --------->SPL7
 
agcttatgaaatctctattttcacttaattcattattgttgattatttgtttctatgggatttttaggcattgcatatgatacccagaaaccctacgcaa  9780500
                                                                                             -------
                                                                                             -------
                                   --------->ZAT18                                        <---------ZAT2
------>YAB1                        <---------ZAT18                                        --------->ZAT2
------ATHB12                       --------->ZAT14                                       --------->LBD16
--->WOX13(1)                       <---------ZAT14       <---------CCA1(2)               ------>NtERF2
>ANAC46                         <---------ANAC46       <---------CCA1(2)                --------->LBD16
>ANAC58                       <---------ANAC46  <---------ARR14(2)                 --------->YAB1 >>
>ANAC58    <---------TOE1(3)  <---------ANAC58  --------->ARR14(2)                 <---------ICU4 >>
----->ICU4 <---------TOE2(3)  <---------ANAC58  <---------GLK1(2)       <----------DOF2<---------LBD16
 
tcatcgaagaatttagggttttcttcgtttctatcgtgtgcaccatcgatggattctcgtatatcagtttctaggctttctctgaatcatcccggctcga  9780600
                                                                                 --------->GLK1(2)
                                                                        <---------ARR14(2)
                                                                        ------->TEIL
                                           ---------->DOF2         <---------At4g35610  <---------At4g35610
-->ANAC58                               --------->TOE2(3)          --------->At4g35610  --------->At4g35610
-->ANAC58                             <---------TOE2(3)           --------->GLK1(2) <-----------RAV1(1)
>>>>>>>CBP60g                         <---------TOE1(3)----------->GT1  --------->GLK1(2)<---------ANAC46
>>>>>>>SARD1                --------->CCA1(2)    --------->At4g35610    --------->ARR14(2)         -
 
aatttgggttctcactcgatactagggtgagaaatgagtttatcgttagagcagaagaaggtaacacagaagctgaatctgaagaatttgttgctgaaat  9780700
    --------->ANAC58                                    <------ZmHOX2a(1)
    <---------ANAC55(2)                               <---------TOE1(2)                <---------ZAT14
    --------->ANAC46                         --------->ANAC58                          <---------ZAT18
    --------->ANAC55(2)                      --------->ANAC46                          --------->ZAT14
    --------->ANAC58                         --------->ANAC58 <---------ZAT2           --------->ZAT18
    --------->ANAC55(1)                   ------>MYB83<---------TOE2(2)             --------->MYB52(2)
   <---------LBD16               --------->At4g35610--------->TOE2(2)             <--------P
 --------->ARR14(2)      --------->ALFIN1 -------->P--------->TOE1(2)   <-----------HVH21
 <---------ARR14(2)      <---------AtMYB61------>MYB46(1)     --------->ZAT2     <-------GAMYB<-----
---------->HVH21     <------ZmHOX2a(1)  --------->TOE1(2) <------ZmHOX2a(2)     <---------MYB46(3)
 
cgctgatacggaaggaaatgtagaggaagtggtcgaagctaaacctacaagaaaacctaggatcaagctcggagatgtcatgggggttagtgaacttctt  9780800
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AGI:  At4g17560.1   
Description:  ribosomal protein L19 family protein. Identical to 50S ribosomal protein L19-1, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8W463;GB:O23597); similar to ribosomal protein L19 family protein [Arabidopsis thaliana] (TAIR:AT5G47190.1); similar to plastid ribosomal protein L19, putative [Brassica oleracea] (GB:ABD65070.1); contains InterPro domain Ribosomal protein L19; (InterPro:IPR001857)
Range:  from: 9780292    to: 9782196    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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