Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    --------->AHL20(1)                                                                                  --------->AHL20(2)                                                                                  <---------AHL20(2)  <---------At5g28300                                            <---------YAB1   <---------AHL20(1) <-----------GT1                                               ----------->GT1   --------->AHL20(2) ---------YAB1           <---------ZAT14                    <-----------RAV1(1)  <---------ATHB12 ------HAHB4             --------->ZAT14             --------->YAB1        --------->ANAC58 -------ICU4           --------->ANAC46             <---------YAB1         --------->ANAC58 ------YAB1          --------->AtLEC2               --------->ICU4       --------->CCA1(2)   ttattaccgttcaaatgtttgccatacaacactgtttattgtaagaagagagtgatcatcaactgttgttataagataagccaataaattgaaatagcaa  9708300                                                          --------->LBD16                           <                                                          ----------->GT1                           -          <---------ANAC58       --------->MYB46(3)     <---------LBD16             <-------GAMYB<---          <---------ANAC58  <------ZmHOX2a(2)         <---------ARR14(2)   <-------TEIL          ----   cttatttgtactgcttggcaatggaactggatcaaacagcccctcaatttctctacaatccggataatagaaacagattcaaactctgttgaaccaaaat  9708400            ------>MYB46(1)       ------>MYB46(1)       ------>MYB83     <---------MYB59     --------->AtMYB61 ----------->GT1    --------->MYB46(3) <------MYB46(1)  ------>MYB83         <------MYB83               <---------TOE2(3)  ------>MYB46(1)     --------->MYB59           <---------AHL20(2) ---------MYB59  <---------AHL20(2)   <---------AHL20(2) ------>GAMYB   --------->AHL20(2)   --------->AHL20(2)              --------->AHL20(2)             - --------GT1------>MYB83             <---------AHL20(1)           --------->YAB1                    < ----->MYB52(1) <---------AHL20(2)   <---------AHL20(2) <----------DOF2      <---------AHL20(2)     -   aaccgaaccaaaccaaattttaatttggtaattctctaatttttttgtttttaatgttctttggacaaatataaaatataaaaatgtcgattgaaaattg  9708500                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               <-----                ---------->DOF2                                                       <---------ARR14(2)     <---------AHL20(2)                                                  --------->AHL20(2)  --------    --------->AHL20(2)                                                 --------->ANAC58<---------GLK1(1)    <---------AHL20(2)                ------->TEIL                     --------->ANAC58--------->GLK1(1) -------->AHL20(2)             --------->MYB46(3)                      ----------->GT1--------->ARR14(2) ---------AHL20(2)           ----------->RAV1(1)              <-----------GT1       --------->LBD16 -------->AHL20(1)     <---------AHL20(2)                  <---------GLK1(1)      <---------LBD16----   aattaattaaatcggaaacaaagaattaatccaacaaatgtatatgtttgattttggctggatttcacaaaccaagtaaattgaaccggaaaccctcagc  9708600                                              <---------ANAC58                                              <---------ANAC46       --------->ATHB12                       <---------ANAC58    <------MYB83                           --------->ALFIN1    <------MYB46(1)                        <---------ANAC46                       <----------DOF2   --------->MYB59                      <------NtERF2                             <---------DAG2 <---------MYB52(1)                     --------->ALFIN1                       <------NtERF2 ----At4g35610                        <---------ANAC46                        --------->ZAT18 ----ZAT2                             <---------ANAC58                        <---------ZAT18 --->ZAT2                     <---------AHL20(2)                              ------>NtERF2 --->ZAT14                    --------->AHL20(2) <---------ZAT18             <---------ANAC58 --->At4g35610               --------->AHL20(2)  --------->ZAT18             <---------ANAC46 ----ZAT14 ---------->DOF2------>MYB46(1)<---------ANAC46             <---------At5g28300        ---- -->CDC5<------------CBF  ------>MYB83<---------ANAC58    <---------WOX13(1) <---------ANAC58   <---- ----->ZAT14            <---------MYB59 <---------AtMYB61<------------CBF --------->ALFIN1      *TSS   acagtttggtcattgaagccggtttaccaaattaaaatcggcgtggtggagtgcaaaccgattgatagaattcacagtggcgcgcttttgccttcatttt  9708700                                                                                          <------NtERF2                                                                                         --------->ORA47(1)                                                                                         ------>NtERF2                                                                                        <---------ATERF1(2)                                                                                        --------->ATERF1(2)                                                                                        --------->DEAR3(1)                                                                                       <------NtERF2                                                                                       --------->ATERF1(1)                                                                                       --------->DEAR4(2)                                                                                      <---------ATERF1(1)                                                                                      ------>NtERF2                 --------->ANAC46                                                     <---------RAP2.3(1)                 --------->ANAC58                                                    --------->DEAR3(1)             <-----------HVH21             <---------ANAC46                       <---------ANAC58         ------->TEIL                   --------->ALFIN1                  <------ZmHOX2a(2)----------        <---------CCA1(2)            ------>ZmHOX2a(2)            ===============HOX2a_HOX2a<-------- --------->GLK1(1)            --------->GLK1(2)                   <------ZmHOX2a(1)<-----------HVH21 ----->HSFB2a(2) --------->ANAC58    ====================================HOX2a_HOX2a <---------DEAR3(1) -----LBD16 <----------DOF2  <---------GLK1(2)             --------->MYB52(1)     <---------ANAC58   cggaactcgtgtacctttcactcaattttcaaattctgatctgtggagcgaaaatggaagacgacggaggagagagatcgagtttcgtcgccggcctaat  9708800                       --------->ANAC58                       <---------RAP2.6(2)                       --------->ANAC58                      --------->SPL7                      <-------TEIL                    <---------SPL7                   <------MYB46(1)                   <------MYB83                  <---------------AtSPL8                  <---------------AtSPL3                  --------------->AtSPL3                  --------->MYB111(1)     --------->ARR14(2)                  --------->MYB59         <---------ARR14(2)  --------->ATHB12                   <---                  --------->MYB46(2)  <---------LBD16        <---------YAB1                     -----                  --------->MYB111(2)<---------ANAC58      --------->CCA1(2)                  -------  <---------ZAT14<--------P          <---------ANAC58    --------->YAB1        <---------ANAC58------ ------->AGL1    <---------MYB55(1)  <---------ANAC46   <---------YAB1         <---------ANAC58<----- -MYB59   ---------->DOF2 <---------GLK1(2)        <------ZmHOX2a(1)       <----------DOF2  ---------   tgagaacagagccaaagaggtaggtacggcttctccattgctcggatttggcaggattatgatatgatttgtgttctctttgggtatcgattttgcgacg  9708900     --------->HSFB2a(2)     <---------HSFB2a(2)    <---------LBD16                                                                             <---- <----------DOF2                                                                                <---- <---------GLK1(1)                                                                            <------ ---NtERF2                   --------->ARR11(3)                                            <---------TOE2(3) ->NtERF2                    <---------ARR11(3)                                    <-----------GT1 -->ATERF1(1)                --------->ARR14(3)              <-----------RAV1(1)<---------GLK1(1) --->DEAR3(1)                --------->GLK1(2)               <---------REM1(1)  --------->GLK1(1) ----DEAR3(1)       <---------TOE1(2)         <---------ARR11(3)   --------->ARR14(2)      <---------TOE1(3) -->HVH21  ------>ZmHOX2a(2) <---------ARR14(3)     <---------YAB1 <---------ARR14(2)     <----------   gcgatttctgggatcgatatcgtagcttcaaaatcttgtttctcgcttgatatttcgattgtgatgttggattcgattttggatttctctgttcaggttg  9709000                                 ------->TEIL                     ------>ZmHOX2a(2)                    <------ZmHOX2a(2)                   <---------ARR14(2)                                                              <-                   --------->ARR14(2)                                                    <---------ANAC46                   <---------ARR11(3)                       <---------At4g35610          <---------ANAC58   <---------RAP2.6(2)    <---------ZAT14                   --------->At4g35610          <---------ANAC58 --MYB46(1)        --------->ARR11(3)                   --------->ANAC58              <---------MYB52(1) --MYB83         ----------->ARR10                      --------->ANAC58             <-------GAMYB -- --P   <----------DOF2   <----------DOF2                --------->ANAC46            <-----------RAV1(1) -RAV1(2)     <---------MYB59--------->ANAC46      <----------ID1          --------->ANAC46       ---   gaatggctgcttttgacctaagatcggcttcactgcatctatctcagtatatagagacaagcagctcataccaaaacacgaagacgctgttgcgtttcta  9709100                                                         <---------ARR14(2)                                                      <---------ANAC58                                                      <---------ANAC58                                                    <------MYB46(1)           --------->ICU4                       <---------MYB46(3)           <---------YAB1            <------NtERF2<--------P         --------->YAB1              --------->At4g35610 --------->ARR14(2)   ------>ZmHOX2a(1)                 <---------At4g35610<---------GLK1(1) ===========================HOX2a_HOX2a         --------->ATHB12                                ----- ------>ZmHOX2a(2)       ----------->RAV1(1) <---------ANAC58        <---------MYB46(3)         <---- --------ARR11(3)     --------->ANAC46       <---------ANAC46 --------->ARR14(2)                <---- ------->ARR11(3)    ------>ZmHOX2a(1)       <---------ANAC58 <---------ARR14(2)             <------ZmHOX2a(1) ------>YAB1<---------ICU4           <---------ZAT2 <------MYB83    <---------ANAC46     <---------MYB52(1)   tgatccttctgtgataattgttcctcccaacaaattggcagccgatggcatggttggggtatcggaactggtggatagatgttatagcaccgttaggaag  9709200  Previous    Next  AGI:  At4g17370.1    Description:  oxidoreductase family protein. similar to oxidoreductase family protein [Brassica oleracea] (GB:ABD65136.1); contains InterPro domain Oxidoreductase, C-terminal; (InterPro:IPR004104); contains InterPro domain Oxidoreductase, N-terminal; (InterPro:IPR000683); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 9706070    to: 9708273    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g17380.1    Description:  MSH4 (MUTS-LIKE PROTEIN 4); ATP binding / damaged DNA binding. similar to MSH2 (MUTS HOMOLOG 2), ATP binding / damaged DNA binding [Arabidopsis thaliana] (TAIR:AT3G18524.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23935.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ57416.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain DNA mismatch repair protein MutS, core; (InterPro:IPR007696); contains InterPro domain DNA mismatch repair protein MutS, clamp; (InterPro:IPR007861) Range:  from: 9708696    to: 9714147    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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