Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     ---------->DOF2                  <---------WRKY45                                                           --------               <---------MYB46(3)                                                          <---------ANAC58             <-------GAMYB                                                                 <---------ANAC55(1)            <------MYB83                         ------>MYB83                              ==========            <------MYB46(1)                      ------>MYB46(1)                           <---------ANAC58           <---------DREB2C(2)                 --------->AtMYB61                           <---------ANAC46           <---------DEAR3(1)                  ------->GAMYB                               <---------bZIP60(2)           <---------DEAR4(1)                  <---------MYB59                             <---------TGA1a        <---------O2                          --------->MYB46(3)                        ----------->HVH21        --------->O2                         -------->P                            <---------GLK1(2)      <---------WRKY38(1)                   --------->WOX13(1)                     --------->ARR11(3)     --------->WRKY18(1)    --------->YAB1<------ZmHOX2a(2)                  <---------YAB1--------->O2 ------->ARR11(3) <---------WRKY12       <---------ARR11(3)                  <---------TOE2(3)      - --------AHL20(1) <---------WRKY38(1)    --------->ARR11(3)            --------->AHL20(2)  <---------O2 --------AHL20(2)--------->WRKY18(1) ---------->DOF2         <---------AHL20(2)    <---------ARR11(3)   atatatggtcaagtcggtggtcaaagaaaatcagagtataaaagatcaaccaaaccagggtatttcatttcaagaaaataagatagatttttgacgtgta  9643200                                       ------>ZmHOX2a(2)                                      --------->CCA1(2)                                      <------ZmHOX2a(2)                                     <---------ARR11(3)                                     --------->ARR11(3)                                     --------->ARR14(2)                                     <---------ARR14(2)                                     <---------AGP1                                     --------->AGP1                 <---------ZAT6                              <---------ARR14(2)              --------->ETT(2) --------->DAG2               --------->ARR14(2)              <---------ETT(2) --->GT1                     <---------ARR14(1)          <-------GAMYB  ------>ZmHOX2a(2) ==========bZIP_DOF          <---------CCA1(2)          --------->MYB52(2)         <---------ALFIN1-- --------->DOF2    ---------->DOF2  <---------CCA1(2)   <---------MYB46(3)        <------NtERF2   <--   taaaaagtcaagaagtaagttgaaagagaccgtatcccagatctgaagtttgatgggtttgttgtcgatagtgatcgtcttggccccaaattcaacacca  9643300                                           <---------At4g35610                                   <---------ZAT14                               <---------DEAR3(1)                <---------ANAC46   --------->ZAT14         --------->AtLEC2      --------->ETT(1)                   ----------->RAV1(2)      <------ZmHOX2a(2)        <---------At1g77200      <---------GLK1(1)                     <------     <---------ARR11(3)        <---------DEAR4(1)       --------->GLK1(1)    <---------ARR14(2)     --------->ARR11(3)        <---------DREB2C(2)    --------->ATHB12       --------->ARR14(2)   ----------->ARR10 <-----------GT1       --------->At4g35610<---------ALFIN1 <-------TEIL--------->YAB1 ------->YAB1   <---------ANAC58   <---------ZAT18   <---------YAB1 ------>ZmHOX2a(1)     <---------ATHB12 -------ATHB12  <---------ANAC58<---------DEAR3(2)   --------->ICU4 --------->LBD16     --------->WOX13(1)   atggtgagatcatgcactgcttgaaacctcttgtcggtgaacttaagcagaaggcatgatttccctactcctgaaaccagattcaaaactcaatcaacat  9643400                                       --------->DAG2                        ---------->DOF2                                     ---------->DOF2                 <---------TOE2(3)                                   --------->ANAC58                  <---------TOE1(3)                                   --------->ANAC58               >>>>>>>>>>GATA-4                             <---------ZAT18   --------->CCA1(2)  >>>>>>>>>>GATA-2                             --------->ZAT18  <---------ARR14(2)  >>>>>>>>>>GATA-1 --------->ANAC46           ---------->ARF1   --------->ARR14(2)  >>>>>>>>>>GATA-3 --------->ANAC58       <---------ANAC58    <------MYB46(1)      --------->YAB1                 <---- --------->ANAC58       <---------ANAC58    <------MYB83        <---------YAB1     ---------->DOF2 ---ICU4                <---------ANAC46  <--------P       <-------TEIL<------ZmHOX2a(1) --------->At4g35610   cacaagcccctcgagccctaaatgtttcttgtccaccaagaaaggttggatatgaattagattcatatgataaggattgaaaagaaaaagaagcagaagg  9643500                                                                             <-------TEIL                                                                          <------MYB83                                                                          <---------DEAR3(2)                                                                          <------MYB46(1)                                                                         <---------TOE1(2)                                                                   --------->ARR14(2)                                                             <---------ARR14(2)                                                             ------->TEIL<---------TOE2(2)                                                             --------->ARR14(2)                  <---------YAB1                             --------->GLK1(2)                --------->YAB1               --------->ARR11(3)    <---------ARR14(2)      --------->ARR14(2) -------->P    <---------ATHB12        --------->YAB1  --------->ZAT18  <---------MYB52(1) ------->TEIL --ZmHOX2a(1)  --------->ICU4       --------->YAB1    --------->ALFIN1 --------->LBD16     <---------ARR14(2)   agttaccagtatcaccgatgatgatatacttaaatctataagcataagacattgaagtggacgaatctgaatccgtaggttcagacaaaaacgaatccct  9643600                                                                                           <---------                 --------->WRKY18(1)                                                  <---------GLK1(2)              --------->DAG2                                                          <------------CBF              --------->MYB59    <---------ARR11(3)                                --------->HSFB2a(2)         <---------MYB46(3) ------------>CBF                                       <---------HSFB2a(2)        <---------ANAC46  <---------ETT(1)    <---------TOE2(3)               <---------HSFC1(2)     ----------->HVH21 <---------ARR14(2)     <---------TOE1(3)               <---------HSFB2a(1)     ------>ZmHOX2a(1) --------->ARR14(2)    <-----------GT1                  --------->HSFC1(2)   ----------->RAV1(2) --------->GLK1(2) <----------DOF2                      --------->HSFB2a(1)   tcttctcctgatgggtaaggtcaagaatccgacaatgtcttcacttttaacgtttttgaatgtttctatagagtcttagaaacttctagattgtgtcact  9643700                                     <------------CBF                                    <--------ATHB1                                    <------------ATHB5                                    --------->YAB1                                    --------->ATHB12                    <---------ANAC58                                    <---------ICU4                      <---------ANAC55(2)                                    -------->ATHB1                      --------->ANAC55(2)                                   <---------ATHB12                     <---------ANAC58                 <------------CBF  <---------YAB1                       <---------ANAC55(1)                --------->ATHB12   --------->ICU4                      --------------->AtSPL8      <------MYB83              ------------>ATHB5                 <-------TEIL      <---------ANAC58     <---------------AtSPL8                 <--------P      <------MYB46(1)     <------------CBF                <---------ANAC46      <---------ANAC58   --------->ATHB12    <---------WOX13(1)<---------TOE2(3)     <---------AtMYB61  --------->ICU4      <------------CBF   <---------TOE1(3)                    -   --------->CCA1(2)    <---------YAB1<---------WOX13(1)<-------GAMYB  <-------TEIL               <-- --HVH21       <---------YAB1  ------------>CBF        <-----------RAV1(1)         <----------DOF2---   tagagatttggtgtctcaccattgggatgattgtacaatgattggagattgatgagtctgttgtgaaggttgatacgtgccatttcttttcttcttaaat  9643800                                                                                      <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                                  <---------AHL20(2)                                                                                  --------->AHL20(2)                                                                                 --------->ICU4                                                                                 <---------YAB1                                                                           --------->AHL20(1)                           --------->ATHB12                            <---------AHL20(2)                          <---------ATHB12                            --------->AHL20(2)                          <---------YAB1                              --------->AHL20(1)                          --------->ICU4                              <---------AHL20(2)                         <---------TOE1(2)                       --------->AHL20(2)   <---------AHL20(1)                     <---------TCP15(1)                       --------->YAB1  --------->AHL20(2)                     --------->PCF5<------ZmHOX2a(2)       ------>ZmHOX2a(1)  <---------AHL20(2) ----------->CBF     --------->PCF2===============================HOX2a_HOX2a <---------YAB1 -------TOE2(3)      <---------TCP20                       <----------DOF2 <---------AHL20(1) ------>DAG2        <-----------HVH21              ---------->DOF2<---------AHL20(2)  --------->AHL20(1)   aaggcaatagcctcttatttggggtcccatgatttggatcaaaaaaaaaaaaaaaaaggtcctttgataaaatttaatatataattaataaatttcaaca  9643900                                              <---------YAB1                              <---------AHL20(2)                              --------->AHL20(1)                              --------->AHL20(2)             --------->AHL20(2)              <---------AHL20(1)                      --------->YAB1      <----------ID1         <---------AHL20(2)           --------->At4g35610   --------->AHL20(2)     ----------->GT1     <---------AHL20(2)  <---------AHL20(2)                 <---------AHL20(2)    <---------------AtSPL8   --------->AHL20(2)  <-----------GT1  <-----------GT1<---------AHL20(2)    --------->DAG2       --------->AHL20(2)<---------YAB1 <---------At4g35610 --------->YAB1   ---------->DOF2----------->GT1      ------>ZmHOX2a(1) --------->MYB59--------->YAB1 <---------YAB1   taacaaaaagtacaaaaatatagaaaattaaaaaaattatcctctattatttttctagttagctaaattaacaattttaaaaataaatgataatcaattt  9644000                                                            -------->HAHB4                                                            <--------ATHB1                                                            --------->ATHB12                                                            <---------ICU4                                                           --------->ICU4                      --------->AHL20(2)                   <---------YAB1                   --------->YAB1    ------>ZmHOX2a(2)   -------->HAHB4                  <---------ATHB12  --------->CCA1(2)    <---------ICU4                    --------->AHL20(2)              <---------AHL20(2)    <------ZmHOX2a(2)    --------->YAB1             --------->TOE2(3)              --------->AHL20(2)   <---------AGP1       --------->ICU4              --------->YAB1             --------->YAB1        --------->AGP1----------->GT1                  --------->GLK1(2)         <---------YAB1            --------->ARR11(3)   <---------ATHB51          <---------ARR11(3)         <---------AHL20(2)        <---------ARR11(3) --------->YAB1      ----------->GT1  <---------AHL20(2)      <---------AHL20(2)       ---------->DOF2  --------->DAG2  ----------->GT1   --------->ARR11(3)     --------->AHL20(2)      >>>>>>>>>GATA-1   ---------->DOF2<---------WOX13(1) --------->RVE1(1)   ttagtgattttataattttaatcataaaatagataaagatctaacaaaaaaaagtttaataatgattggcaaaatttagttaaaaatcttaatataaatt  9644100  Previous    Next  AGI:  At4g17160.1    Description:  AtRABB1a/AtRab2B (Arabidopsis Rab GTPase homolog B1a); GTP binding. similar to AT-RAB2 (Arabidopsis Rab GTPase homolog B1c), GTP binding [Arabidopsis thaliana] (TAIR:AT4G17170.1); similar to unknown [Populus trichocarpa] (GB:ABK95459.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579) Range:  from: 9641991    to: 9643552    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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