Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      ------>ZmHOX2a(2)             ---                                                                    ===========================HOX2a_HOX2a                                                                   ============================HOX2a_HOX2a                                                                   <------ZmHOX2a(2)             <---                                                                  <---------ARR14(2)             ----                                                                  --------->ARR14(2)           ------                                                                --------->DEAR3(1)            -------                  ------>ZmHOX2a(1)         ---------->DOF2    <------NtERF2               <---------WRKY38(1)                ------>ZmHOX2a(2)      <----------DOF2        ------>NtERF2                <---------WRKY12                =====================HOX2a_HOX2a          --------->ANAC58                <------ZmHOX2a(2)    <----------DOF2           ------>ZmHOX2a(1)           --------->ANAC46               <-----------ARR10 -------GT1   <---------ARR14(2)   <---------CCA1(2)      --------->ANAC58              <------ZmHOX2a(1) ---DOF2      --------->ARR14(2)  <---------TOE1(2)     ---------->DOF2        --------->YAB1 -------   acccatctttgtttctgatcctctggtttgtcctcgcatgtctttttaaagacatcgccaaagccaccgatctgttttctaacatgagaaggatcaacgc  9495400                                                 ------>ZmHOX2a(2)                                                <---------GLK1(1)                                                --------->GLK1(1)                                    <-----------GT1      <---------LBD16          <---------ANAC58<---------ARR11(3)         <-------MYC3     --------->MYB52(1)   <---------------AGL15--------->ARR11(3)      <---------ALFIN1 ------>LBD16             --------------->AGL15--------->ARR14(2)  --------->MYB46(3) ------ANAC46--------->YAB1    <---------ANAC46<-----------ARR10  --------->ANAC58 ----->DEAR3(1)     <---------MYB46(3)--------->ZAT6   --------->AtMYB61  ------->MYC3 ->GAMYB--------->LBD16  <-----------------AGL1<---------ARR14(2) --------->ANAC46 -->DEAR3(1) <-----------GT1   <---------ANAC58<---------AGP1     --------->ANAC58 -->ANAC46--------->ARR14(2)<----------DOF2   <---------CCA1(2) ---------->DOF2     --------->YAB1  -   cgtagaaaaccggaatcaccatttgttcccctttcttgtaacacttgtggatctccaccaattcattcaagcaccacgttgaagaagcatagttctcaga  9495500                 ------>ZmHOX2a(1)               ------>ZmHOX2a(2)                                            ----------->HVH21              <------ZmHOX2a(2)                              <---------GLK1(2)             <---------ARR14(2)                             <---------ZAT2 --------->LBD16             <---------ARR11(3)                             <---------At4g35610             --------->ARR14(2)                             --------->At4g35610 ------>ZmHOX2a(2)             <---------GLK1(2)                             ------->TEIL   <---------ANAC55(2)             --------->ARR11(3)              <---------ARR14(2)           <---------ANAC46          -             --------->AGP1                  --------->ARR14(2)           <---------ANAC58  ---------            <---------GLK1(1)      <---------MYB52(1)--------->ARR14(2)   <---------ANAC58  <--------           ----------->ARR10      <-------GAMYB<---------DEAR3(1)         --------->ANAC55(2)  <-----     <---------YAB1               <---------RAP2.6(3)--------->ICU4       <---------ANAC55(1)-------- -------->At4g35610              <---------MYB46(3)  <---------ARR14(2) ------>NtERF2 ------->TEIL <-   gaagatgactattgagatcctcgcttctctaatggccgttataagcgcatcggcgattatgcagcttctcacgatgccgtgatccatgaatgtattgatt  9495600                                                                                              <------ZmHOX2a(1)                                                                                           --------->HSFB2a(2)                                                                                     --------->LBD16                                                                                     ------>NtERF2       --------->ETT(2)                                                            <---------LBD16       <---------ETT(2)                                                         <---------GLK1(1)     <-----------HVH21                                                          --------->GLK1(1)  --------->At4g35610                               --------->ANAC46           <-----------ARR10 ----->ZmHOX2a(2)                              <---------ARR11(3)              ------->TEIL<---------HSFB2a(2) >ICU4--------->ALFIN1                         <-----------ARR10               <---------ARR14(2) -YAB1--------->WRKY18(1)                      --------->ARR11(3)             <---------ARR14(1) ----WOX13(1)                      <---------HSFB2a(1)         <---------ANAC58<---------ARR11(1) ->ATHB12                          --------->HSFB2a(1) <---------ALFIN1       <---------CCA1(2) --------At4g35610              <------ZmHOX2a(1)  -------->P  <---------ANAC58--------->ARR14(2)   >   gatctgcggtcgagcgcctcgattagatggctgaggaacgttttgcgaacatctaccccactgaagcttgggaaaacgtcgtatctccggctactaggag  9495700                                                     <---------RVE1(1)          --------->ANAC58                   --------->CCA1(2)  ----------->GT1          --------->ANAC58       <---------GLK1(1)  <---------GLK1(2)               <---------ZAT6      >>>>>>>>>TBF1              --------->GLK1(1)  --------->ARR11(3)      --------->ANAC58      <--   >>>>>>>>>TBF1               --------->ZAT18      <---------ARR11(3)      --------->ANAC58     ---- >>>>>>>>TBF1                  <---------ZAT18    ----------->ARR10 --------->WOX13(1)    ---------->DOF2   aagaagaagaagaagccatgggagacgatagagggaactcagagaagagacgaagatttttaagagaagtaaatcagcaagacatagtgtgagaaagaga  9495800                                                           <----------DOF2                                                        --------->GLK1(2)                                                      <---------CCA1(1)                                                      <---------RVE1(1)                                                     --------->ARR14(2)                                                     --------->ARR14(3)   --------->HSFB2a(1)                               <---------ARR11(3)                     ---------   --------->HSFC1(2)                                --------->ARR11(3)                   --------->ANAC58   <---------HSFC1(2)                                <---------ARR14(3)                   --------->ANAC58   <---------HSFB2a(1)                        --------->ZAT14                  --------->ARR14(2) ----ZmHOX2a(1)                    *TSS       <---------ZAT14      ----------->GT1   ------>ZmHOX2a(1) ------->GT1                   <---------AtLEC2      <---------ARR14(2)       <---------CCA1(2)<-----   ggagaaacttcgtcttccttccctccaagacttgcatagaagacttactgtacaagatattcttttaagtggctaaaatcaaatctcctaacaagacaat  9495900                <---------GLK1(2)         --------->YAB1  --------->ANAC55(2)                                             <---------CCA1(1)  <---------ANAC46                                                <---------RVE1(1)  <---------ANAC55(2)                       <----------DOF2      --------->AHL20(1)  --------->ANAC58                     ---------->DOF2           <---------AHL20(1)  ----------->GT1                   --------->HSFB2a(2)          <---------ARR11(3)           <------  --------->ANAC58     ------>NtERF2<---------HSFB2a(2)      ---------->DOF2               <-------GAMYB <-----------------------TaNAC69(2) ------>ZmHOX2a(1)--------->ANAC46      <---------YAB1 <---------MYB46(3) --->CBF<---------AHL20(2)          --------->LBD16--------->ZAT6--------->ARR11(3)      <---------TOE2(3) -------CBF ---------->DOF2    <----------DOF2   <-----------GT1--------->YAB1         <-----------RAV1(1)   tgagacgtaaataataaagaaactcggcccttcctttcctcgaaagcttttttacactacatacaaagatatttttgaagattgaatttttgtggttgtc  9496000                                                                                                <----                                                                                                <----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               <-----                                            <-----------GT1                                   -------       --------->YAB1                  --------->AHL20(2)                                <---------REM1(2)      <---------YAB1                   --------->YAB1                                 ------>ZmHOX2a(1)    <---------ICU4               ----------->GT1                    <---------GLK1(2) <--------------    --------->YAB1           --------->ANAC46          --------->ANAC46           --------->ARR14(2)   --------->ICU4            --------->ANAC58        --------->HSFB2a(2)          <---------ARR14(2) -----HVH21                  --------->ANAC58        <---------HSFB2a(2)      <-------TEIL ----------   actgaattatgataagtcttagtctttgtacaagacagaaataatatttcaatttctaggcaagtagacagaaacttacattcgtttcctctacaaagat  9496100                                                         --------->LBD16                                                        --------->ANAC46 -----RVE1(1)                                          <---------LBD16 -----CCA1(1)                                       <----------TaMYB80 --->ARR11(3)                                      <---------KAN4(2)---------->DOF2 --->AHL20(1)                                      --------->ARR14(2) ----AHL20(1)              --------->At4g35610     ---------->TaMYB80 ----ARR11(3)       <-------GAMYB             ---------->DOF2 <---------REM1(1)      <---------YAB1 -->YAB1           <---------MYB46(3)       <---------YAB1 --------->ARR14(2)      <---------ICU4 -AGL15           ---------->ID1  ------>ZmHOX2a(1)<---------ARR14(2)              --------->YAB1 >DOF2            <---------TOE2(3)      <---------AHL20(2)<---------ARR14(2)     --------->ICU4    <   attttgaaaacacaaattttgtggttatcagttgtccttgtatataatgaaagaatatgcggaattgtagcaaagagtaagagaattatgaagaacaaga  9496200                                <---------YAB1                                    --------->ANAC58                           --------->YAB1                <---------ANAC46         --------->ANAC58                          <---------ATHB12               <---------ANAC58         --------->ANAC46        <---------YAB1  ------>MYB83                     <---------ANAC58  ---------->DOF2      <----  <------MYB46(1)       ------>MYB46(1)              <----------DOF2      <---------AHL20(2)   ------  <------MYB83        <---------MYB59               --------->TOE2(3)     --------->AHL20(2)--------- --------P       <---------KAN4(2)               <-----------GT1       ------->TEIL  ---------->DOF2   gagttggtatatgagtgagaatgaccaaatcatattgatagaattagttagtaacctttgtgtgtttacaatgtatttaaagacacacaaagggaatatg  9496300  Previous    Next  AGI:  At4g16860.1    Description:  RPP4 (RECOGNITION OF PERONOSPORA PARASITICA 4). similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16920.1); similar to RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) [Arabidopsis thaliana] (TAIR:AT4G16950.1); similar to RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) [Arabidopsis thaliana] (TAIR:AT4G16950.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO70119.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPr Range:  from: 9488485    to: 9495835    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g16880.1    Description:  disease resistance protein-related. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16940.1); similar to disease resistance protein [Arabidopsis lyrata] (GB:ABB00841.1); contains InterPro domain Leucine-rich repeat 3 (InterPro:IPR011713) Range:  from: 9496206    to: 9498945    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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