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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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              --------->ATHB12
             <---------YAB1
           --------->YAB1                                                                       <---
           <---------ICU4       ---------->DOF2                                              -------
        <----------DOF2    <---------AtLEC2                      <---------ICU4              <------
-----DOF2 --------->ICU4 --------->AtLEC2                 ---------->DOF2      <----------ID1<------
 
ttttttttttgctataatgactgaaaccatgcatgaaaagtcttctaaatagaatcgaactaaaagaaaaattacacttaaaaaaacaaattgcaatatt  9470000
                                            <---------YAB1
                                           --------->AHL20(1)
                                         --------->AHL20(1)
                                         <---------AHL20(1)
                                      --------->AHL20(2)
          <------MYB46(1)       ----------->GT1                                               ------
          <------MYB83         <---------HSFB2a(2)                                         <--------P
          ----------->GT1      --------->HSFB2a(2)                  <---------YAB1        --------->At5g28300
------AHL20(2)                 --------->HSFC1(1)       ----------->GT1                  -----------
-->AHL20(1)                   ------>ZmHOX2a(2)        --------->DAG2                 --------->MYB52(1)
---AHL20(1)                 <---------ARR11(3)        ---------->DOF2         --------->AHL20(2)
---ARR11(3)                 --------->ARR11(3)    ------->TEIL -------->ATHB1 <---------AHL20(2)
 
ttttggttttatttggtttaaaactatgtatgatctagaaaaaaaatattatgagcctaaagtgaattattctgattctatataaatacaaacggtaagt  9470100
                                                      --------->ARR11(3)
                                                      <---------AHL20(2)
                                                      <---------ARR11(3)
                                                      --------->AHL20(2)
                                                      <---------AHL20(1)
                                                      --------->AHL20(1)
                                                  <---------AHL20(2)
                                                 --------->AHL20(2)
                                               --------->TOE2(3)
                                             <---------AHL20(2)
                                          <---------ICU4              --------->ICU4
<---------TOE2(3)                        <---------YAB1          --------->YAB1      <-------TEIL
--->ICU4          <---------ZAT6         --------->ICU4   ----------->GT1  <---------ARR14(2)
>GT1       --------->AHL20(2)          --------->YAB1--------->AHL20(2)    --------->ARR14(2)
 
attaagttagaaaactaaatagtcttatgtatacaaatctcttcataattcattaaatatattgtaaattgtaatgagtattttcatatacatagactga  9470200
               <---------YAB1
              --------->AHL20(2)
           --------->TOE2(3)
           --------->TOE1(3)
          ----------->GT1
         <---------TOE2(3)                --------->ALFIN1
         <---------TOE1(3)       ----------->GT1
     <----------DOF2        ---------->DOF2
     <---------DAG2----------->GT1    <---------YAB1                      <---------GLK1(2)        <
 
tagaagcactttatcgttaaaattgcaaaataaaagtagttataagtgggcataaatgaccaaaatttgctaaaatagattgtttttttttttttttttt  9470300
                                                                  <----------DOF2
                                                                <---------DEAR3(2)
                                                                <---------MYB46(3)
                                                               <---------DEAR3(1)
                                                              <------NtERF2
                                                              <---------MYB52(1)
                                                             <---------RAP2.6(3)
                                                             ------>NtERF2             <---------ALFIN1
                                                            <---------ANAC46           --------->DEAR3(1)
                                                            <---------ANAC58           --------->AtMYB61
                                 --------->AHL20(2)    <---------GLK1(1)              --------->MYB46(3)
          <---------ZAT14     --------->YAB1           --------->CCA1(2)            --------->YAB1
          ----------->HVH21   <---------ICU4          --------->ARR11(3)            <-----------GT1
     --------->ZAT18         <---------ATHB12         <---------ARR14(2)            <---------ICU4
   ----------->HVH21         --------->ICU4           --------->ARR14(2)         <---------ICU4
   <---------ZAT18           <---------ATHB51         --------->ARR11(1)         --------->YAB1
 <------MYB83       <---------ARR11(3)               <<<<<<<<<RAP2.2          --------->YAB1      <-
 <------MYB46(1)    --------->ARR11(3)              ----------->ARR10 --------->ANAC55(2)    <------
--------P --------->ZAT14------------>CBF   <----------DOF2 <---------ANAC58 <---------YAB1 <-------
 
tggtaggggacactggacagggagataatccaataatgaaatataaacttttgtttagatatgccgtcggtttaagtattctgataatcaccaccgtttt  9470400
                                                                                  --------->ARR11(3)
                                                                                  <---------ARR11(3)
                                                                                 -------------------
                                                                             ------>MYB46(1)
                                                                             -------->P
                                                                           --------->AtMYB61
                                                                           ------->GAMYB
                                                                          --------->MYB46(3)
                                                                          <---------MYB52(2)
                                                                          <---------MYB55(2)
                                                                          <---------ATHB12
                                                                         ------>MYB46(1)
                                                                         ------>MYB83
                                                                         --------->ANAC58
                                                                         -------->P
                                                                         --------->ANAC58
                                                                        --------->MYB55(1)
                                                                       <---------MYB46(2)
                       <---------AHL20(2)                    <----------DOF2 ------>MYB83
                       --------->AHL20(2)          ------>ZmHOX2a(1)   --------->MYB46(3)
                       <---------AHL20(1)         --------->TOE2(3)    <---------MYB55(2)
                 <---------ALFIN1              <-----------GT1         <---------MYB111(1)
   *TSS     <-----------GT1              <---------ICU4<---------ICU4  <---------MYB111(2)
----------GT1    --------->ANAC46  --------->TOE2(3)  <---------YAB1   --------->AtMYB61
----DOF2  <<<<<<<<<SARD1     <---------YAB1 <---------AHL20(2)         --------->DEAR3(1)   <-------
--MYB52(1)<<<<<<<<<CBP60g   <-----------GT1 --------->AHL20(2)        --------->MYB46(3)<----------DOF2
 
tttgcctattccaaatttccacacattttattttcatttcttaatatttatttccttatcatttctttctctcaccaaccaacaagttctcctttctacc  9470500
                                        --------->YAB1
                                 ----------->GT1
                              --------->AGP1
                              <---------ARR14(2)
                              --------->ARR11(3)
                              <---------AGP1
             <---------ICU4   <---------ARR11(3)                                                   -
        ===============================HOX2a_HOX2a                                                 -
        ------>ZmHOX2a(1)     --------->ARR14(2)                                                  --
   ---------->ID1        <----------DOF2<---------ICU4   <------MYB46(1)               <---------ANAC46
 <---------ANAC58<---------TOE2(3)   --------->YAB1      <------MYB83                  --------->ALFIN1
 <---------ANAC58---------->ID1 ------>ZmHOX2a(2)     <---------ANAC58     <XXXXXXXXXXXXXXXXXXXXMIR391
---->TaNAC69(2) <-----------GT1<------ZmHOX2a(2)      <---------ANAC58    <---------ZAT6         ---
----GT1 ==============================HOX2a_HOX2a     <---------ANAC46 <---------AtMYB61  ----------
 
catttcgtctccttcattttgacgttttctttagatctgttaataatcccatccatggcttggtctagtcactagtggtgttatctctctgtgtggaata  9470600
                                                                                           <--------
                                                                                           ---------
                                                                                           ---------
                                                                                           <--------
                                                                                      --------->ANAC58
                                                                                      --------->ANAC58
                                               <-----------GT1                   <-----------ARR10
                                  --------->CCA1(2)                              <---------ARR14(2)
                                 <---------ARR14(2)             <---------MYB46(3) ------>ZmHOX2a(2)
                                 --------->ARR14(2)         <-----------RAV1(1)  --------->ARR14(2)
-------->ANAC58                  --------->ARR11(1)     --------->ATHB12        <------ZmHOX2a(1)
-------->ANAC58                  --------->ARR11(3)    <---------YAB1     <---------At4g35610     <-
------->DAG2            ----------->GT1     --------------->AtSPL8    <---------YAB1  --------->ANAC46
------->DOF2<-----------GT1      <---------ARR11(3) <----------DOF2 --------->YAB1<------ZmHOX2a(2)
->GT1      <---------AHL20(2)  <---------TOE2(3)------->TEIL<---------MYB46(3)<---------TOE2(3)  <--
 
aaaagcaaggttttttaatcacttggattgttttaagatatggcaactttgaacccttttgatttgttggatgatgatgctgaggatccaagccagctcg  9470700
                                                                        --------->HSFC1(2)
                                                       <---------ZAT2   --------->At4g35610
                                                       <---------At4g35610
                                                    <---------ANAC58    <---------At4g35610
                             --------->GLK1(1)      <---------ANAC58    <---------HSFC1(2)
-ZAT2  <---------HSFB2a(2)   <---------GLK1(1)  <---------ANAC58     ------>ZmHOX2a(1)          ----
>At4g35610                --------->ANAC58      <---------ANAC58<---------ZAT2                ------
>ZAT2  --------->HSFB2a(2)--------->ANAC58     <---------ZAT2   <---------At4g35610          ------>ZmHOX2a(1)
-At4g35610                --------->ANAC46  <---------ANAC58    --------->At4g35610--------->ANAC46
------GAMYB   <---------WOX13(1)            <---------ANAC58<-----------HVH21      --------->ANAC58
---------RAV1(1)--------->YAB1--------->GLK1(2)--------->ZAT2   --------->ZAT2     --------->ANAC58
 
ctgttgccatcgagaagattgataagtccaagaaatctggacaggtttcgagcttgcctgctaagtcagctcctaagcttccatcgaagccacttcctcc  9470800
                                                           <-----------GT1
                                                          <---------YAB1
          <---------AtMYB61            --------->YAB1   <---------ICU4                            <-
     <---------DEAR3(1)            <---------AHL20(2)  <---------YAB1                      <--------
  --------->ANAC58                --------->AHL20(2)  <----------DOF2 --------->At4g35610  ---------
  --------->ANAC58         <---------ATHB12        <---------ARR11(3) <---------ZAT2  <---------ANAC46
-->ZmHOX2a(1)            --------->WOX13(1)        --------->ARR11(3) --------->ZAT2 --------->ATHB12
----->RAV1(2)        --------->YAB1--------->AHL20(2)------>ZmHOX2a(2)<---------At4g35610  <--------
 
tgctcaagccggtgaggtttcttctcataaatcaatatttaatcagaaaaattcgatctttattactggagtaagctgtctgtgttattgtttggattct  9470900
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AGI:  At4g16830.1   
Description:  nuclear RNA-binding protein (RGGA). similar to nuclear RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G47210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22325.1); contains InterPro domain Hyaluronan/mRNA binding protein (InterPro:IPR006861)
Range:  from: 9470404    to: 9472613    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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