Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->HSFB2a(2)                                                                                    <---------HSFB2a(2)                                                                                  --------->At4g35610                                                                                 --------->GLK1(2)                                                  <---------At4g35610         --------->ANAC58     ------>ZmHOX2a(1)              --------->TOE2(3)                     --------->YAB1 <---------ALFIN1                  --------->REM1(1)         <-----------GT1  --------->ANAC58 ---------At4g35610              ----------->RAV1(1)    <---------ICU4   <---------YAB1   cccgctccttcttcgctcacaatacctctccttggcaacatcaaacctcttcttctgatcaatacacccttcttgatcataagcatctggaaacctatac  9390400                                                                                           ==========                  ------>ZmHOX2a(1)                                                        ------>ZmHOX2a(1)            <---------YAB1                                                                 ==========          <---------ICU4                                                           <---------MYB52(1)          --------->YAB1          ------>MYB83                                    --------->TOE1(3)         <---------YAB1           ------>MYB46(1)        >>>>>>>>>RAP2.2          --------->TOE2(3) <       --------->YAB1           --------->MYB46(3)    <---------CCA1(2)         <<<<<<<<<NAM <-------   ccttcaacatcatcatcatcctctgttttcttcaccaactcatacaatgctctcttatatctaaactcaattacttctctcatcccttaactcctccacc  9390500                           <---------ANAC58                           <---------ANAC58               --------->LBD16                        <-----------ARR10             ------>ZmHOX2a(2)                       <---------GLK1(2)            <------ZmHOX2a(2)                   --------->TOE2(3)           --------->ARR14(2)                   --------->TOE1(3) ==================HOX2a_HOX2a            --------->TOE1(3) ===================HOX2a_HOX2a           --------->TOE2(3) ---------YAB1 <-----------HVH21    <---------HSFC1(2)<---------ARR11(3) --ALFIN1  <---------ARR14(2)       --------->HSFC1(2)--------->ARR11(3)             <---------ARR11(3)   ttcttattctctcgatccgtcaaatactttcgtcttgaaacttcccttaacctcaaaatctcatcgctactcaaaaccttctcccaagaactcaacttcg  9390600                                                <---------------AGL15                                                --------------->AGL15                                     --------->GLK1(1)                                     <---------RVE1(1)                                    <---------ARR11(3)                                            ---                          <<<<<<<<<TBF1    <<<<<<<<<TBF1                                     <------ZmHOX2a(1)                       <<<<<<<<<TBF1--------->ARR11(3)                              <---------HSFB2a(2)                    <<<<<<<<<TBF1   <---------GLK1(2)                               --------->HSFB2a(2)                 <<<<<<<<<TBF1      --------->ARR14(2)<---------HSFB2a(2)        <---------AHL20(2)              <<<<<<<<<TBF1         <---------ARR14(2)--------->HSFB2a(2)   <---------AHL20(2)    ---            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <----------DOF2<----------DOF2--------->AHL20(2)---   ttttattctcgtcttcttcttcttcttcttcttctacagatattcttcttctctttgtagaaattttctttggtatattgaattttatagaaacaggaag  9390700                                                                --------->ARR14(3)                                                                --------->ARR11(3)                                                                <---------ARR11(3)                                                                <---------ARR14(3)                                                                --------->ARR14(2)                                                                <-----------ARR10                                                           --------->TOE1(2)                                                           --------->TOE2(2)                                                    <---------HSFB2a(2)          --------->TOE2(3)                                                    --------->HSFB2a(2)     --------->LBD16                                                    --------->LBD16        <---------HSFB2a(2)                                                   <---------ANAC46        --------->HSFB2a(2)                                                   --------->HSFB2a(2)     --------->ANAC46                                                   <---------HSFB2a(2)    <---------LBD16 ------>ANAC58                                     <---------LBD16------>ZmHOX2a(2) ------>ANAC46                                    <---------LBD16<------ZmHOX2a(2) ------>ANAC58                              <---------CCA1(2)   <---------ARR14(2)   acgacatgttgttttctcaacagataaaaactgaattgtcgaattcatctcttccgggaaaccaaggatcttcttctccggaacattagtctccattctt  9390800                               --------->ARR11(3)                               <---------ARR11(3)                             ----------->ARR10                         --------->At4g35610                         <---------At4g35610                         --------->ZAT2                         <---------ZAT2                      <-------PIF5                      ------->PIF5                                             --------->GLK1(1)                     <---------O2                      --------->TOE2(3)--------->At4g35610                     --------->ANAC46                ------->TEIL       <---------At4g35610    --------->ANAC46 --------->O2               --------->CCA1(2)      --------->MYB59  <-----------GT1   <---------LBD16        --------->ETT(2)        <---------ZAT6   cgatttacaccagaatagattccacggggctgagatttttgtttgtcgagagacgaaccctaattctcagagttagctctgaaatctaatttttgtttcg  9390900                                  <-----------TBP                                  --------->AHL20(2)                                  <---------AHL20(2)                                <-----------TBP                                --------->AHL20(2)                                <---------AHL20(2)                                             <-----                              <-----------TBP                                     <-----------GT1                              <---------AHL20(2)      <---------PCF2            ---------->TaMYB80                              --------->AHL20(2)     ------>NtERF2              <---------KAN4(2)----                            --------->AHL20(2)     <---------ANAC58    <------MYB46(1)       <-------                            <---------AHL20(2)     <---------ANAC58    <------MYB83         <--------              <----------ID1<-----------TBP    <---------ANAC58   ------>ZmHOX2a(1)      <---------YAB1          ---------->DOF2 <-----------TBP      <---------ANAC58 ----------------->AG --------->TOE2(3)     <-----------GT1  ----------->GT1     <---------GLK1(1)     ----------------->AGL1------>ZmHOX2a(1)   atttgttttaccaaaagaaacaaatcgtatatatatatatatagaattctcgtgcgggccagagtttcctatttggtttgggaatttccttatttttaat  9391000                                            --------->CCA1(2)                                           --------->AHL20(1)                                           <---------AHL20(1)                                           <---------AHL20(2)                                   --------->AHL20(2)        --------->At4g35610   --------->AHL20(1)      <---------WRKY38(1)     <---------AHL20(2)     <<<<<<<<<<WRKY6          --------->AHL20(2)                                                 <---     <<<<<<<<<<WRKY11         <---------AHL20(1)                                                <----    <-----------HVH21        --------->AHL20(2)   ----------->GT1           ------------>CBF    <---- ----TOE2(3)         --------->ANAC58   --------->AHL20(2)                 --------->TOE2(3)    <---- ----->AHL20(2)      --------->ANAC58  <---------AHL20(2)              --------->ANAC46     <-------- --AHL20(2)   --------->ANAC55(2)  <---------AHL20(2)  <------------CBF--------->bZIP60(2) --------->ATHB12 -YAB1<---------WRKY12     --------->YAB1  --------->ARR11(3)        --------->AtMYB61   <----------DOF2   gaaataggtcaactaaacgtgataagcaagaataaatttaaataatatataggtgtaaattgtatactagaccacatcatcaatttgcaaactttattgc  9391100                                                                                                  <--                                                                                           --------->YAB1                                                                                       --------->GLK1(2)                                                                                      <---------ARR14(2)                                                                            <---------RVE1(1)     ---                                                                            <---------CCA1(1)     ---                                                                <---------AHL20(2)    --------->ARR14(2) -------DOF2                                                   --------->AHL20(2)     <---------GLK1(2) -----ANAC46          <---------YAB1                           <---------ATHB12       --------->ARR11(3) -----ANAC58   <---------AHL20(2)                   --------->ARR11(3)     --------->ARR11(3)   <---- -----ANAC58   --------->AHL20(2)                 <---------YAB1--------->AHL20(2)  ----------->ARR10 ----CBF      --------->AHL20(2)          <---------YAB1  ---------->ID1   <---------ARR11(3)--------   ttttaaaacatgaaaattaaaattttgatgaaatctacatagttatgtttttatgattttgtccaattaatatcagagatatttgtaagattctcatgac  9391200                                                               --------->ARR11(3)                                                              <---------CCA1(2)                                                             --------->AHL20(1)                                                             --------->ARR11(3)                                                             <---------AHL20(2)                                                             <---------AHL20(1)       <---------At5g28300                                   <---------ARR11(3)      <-----------GT1               --------->ATHB12    --------->ARR11(3)            --------->AHL20(2) -------ANAC55(2)             --------->ANAC58    --------->YAB1         --------->AHL20(2) ------>ANAC55(2)             --------->ANAC58   <---------YAB1<---------ARR11(3)     <---------AHL20(2) -------->GT1           <----------DOF2        --------->CCA1(2)       --------->TOE2(3)  <---------AHL20(2) -----ANAC46      --------->At4g35610       <---------YAB1--------->AHL20(2)       ----------->GT1 --->HVH21        <---------At4g35610 <---------WOX13(1)<---------ARR11(3)<---------AHL20(2)   atgtaattttaccatgtttcatcttactttgaacgccttcattgatatgatatgataagataatatatcttcacattaatttttgtagttaattacttca  9391300  Previous    Next  AGI:  At4g16680.1    Description:  RNA helicase, putative. similar to MEE29 (maternal effect embryo arrest 29), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT2G35340.1); similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT1G32490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64476.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ74568.1); similar to RNA helicase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD01767.1); contains InterPro domain Region of unknown function D Range:  from: 9388093    to: 9390796    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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