Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <---------GLK1(2) -------->MYB46(3) --->MYB83 -------->RAV1(1)                                                                              ------ ------>MYB52(1)                                                                ----------->HVH21 --->MYB46(1)                                                                 ----------->RAV1(2)   < ---->MYB46(3)                                                              <---------ALFIN1   ------ -->GAMYB                                                         ------>ZmHOX2a(1)          <------- ->P   <----------DOF2             <----------DOF2                <---------At4g35610 --------->TOE1(2) >MYB46(3)           ----------->HVH21              <---------GLK1(2) <---------GLK1(2)   <<<<<<<ZML2   caacagcttctttcaatctccctgtaacacatagaccctttaatgtcttatctagcttctctgttttcctctgattctccacctgaaacctagaaccaaa  9289200      --------->ANAC58                                                                    --------->CCA1(2)      --------->ANAC58                             --------->YAB1        <-------TEIL<---------ANAC55(2) >MYB46(1)                    <-----------GT1     <---------YAB1<---------YAB1       --------->ANAC55(2) ---------YAB1              <----------DOF2      <---------ARR11(3)  --------->DAG2  --------->ANAC46 >MYB83          --------->DAG2                  --------->ARR11(3)---------->DOF2 <-----------GT1 --MYB59        ---------->DOF2              --------->CCA1(2)--------->YAB1   <----------DOF2   ttttgatcactcaatggaaaaagcttcagactttacaatctcataagagatgatcatagcagaattataaaaaggttcagcctttatacgtgatacaaga  9289300                                                                                                -----                                                                                                <----                                                                                                >>>>>                                                                                                >>>>>                                                                                                -----                                                                                               <-----                                                                                             <-------                                                                                             <-------                                                                                            <------NtERF2                                                                                           <---------SPL7                                                                                          <---------ANAC46                                                                                          <---------ANAC58             --------------->AGL15                                                        <---------ANAC58             <---------------AGL15                                                      --------->LBD16            ----------------->AGL3                                                    <---------LBD16          --------->GLK1(2)                                   ------>MYB46(1)         --------->SPL7     ---------->DOF2                                       <---------HSFB2a(1)   --------->ANAC58   --------->ARR11(3)                             ------->TEIL------>MYB83       --------->ANAC46  --------->YAB1                         --------->LBD16   --------->HSFB2a(1)   --------->ANAC58 ---   acaaagataaagattccaattttagacgaataaacccaaaatcagggaaatgaatttcgaaaccttccaattctcttctctgcaagcatccggcgtagga  9289400             --------->LBD16            <---------ANAC46           ----------->RAV1(2)        <---------GLK1(1)            <---------TGA1a        --------->GLK1(1)            --------->TGA1a       ========================================bZIP_DOF       <----------DOF2               <---------O2   <------NtERF2                     --------->O2 <---------DEAR3(1)                 <------NtERF2 ---->ARR14(2)                     ------>NtERF2 -----ARR14(2)                     <---------ATERF1(1)                <---------ZAT14 >>>>ARR2--------->ARR14(2)       --------->DEAR3(1)                  --------->ZAT14 >>>>ARR1<---------ARR14(2)      --------->DEAR3(2)                   --------->ZAT18 ---->ARR11(3)                --------->SPL7   ------>NtERF2         --------->ALFIN1 -ZmHOX2a(1)--------->HSFB2a(2) <---------At4g35610         <---------GLK1(1)                   <---- --TOE1(2)  <---------HSFB2a(2) --------->At4g35610         --------->GLK1(1)  --------->ATHB12 ----- --TOE2(2) <---------LBD16  --------->LBD16   --------->ANAC58    --------->LBD16     --------->ANAC58 --->ZmHOX2a(2)           <---------LBD16     --------->ANAC58   --------->LBD16      --------->ANAC58   tcgtcgtcgcatttccggagaacatagaaccggaagccgacgtctgagacgcctctgtttggaactcccgagtgtagtaaaccattgcaagcttattcag  9289500                                                                             --------->MYB52(1)                                                                           --------->AtMYB61                                                                           <---------DAG2                                                                         ------>MYB83                                                                         ------>MYB46(1)                                                                        <---------ALFIN1                                                                       --------->DEAR3(1)                                                                 --------->TGA1a                                                                 --------->bZIP60(1)                                                                 --------->ANAC46                                                        <---------YAB1 <---------MYB111(2)                                                  <---------TOE2(3)    --------->MYB46(3)                                                  <---------TOE1(3)    <---------MYB55(2)                                ===========================================bZIP_DOF         ----------->GT1<---------GLK1(1)        <-----------GT1 <---------bZIP60(1) -----At4g35610    <---------------ANT           <---------DOF5.7(2)  --------->ANAC58            <-- ---->At4g35610 --------->ATHB12---------->DOF2  --------->MYB52(1)   --------->ANAC58           <---   cttgaagcaaatagtcaaacattgggatttgtgagaaagagaagaagagattaacgttttcattctcacatcacccaccttaccgatggagaaattgtgc  9289600                                   <---------ZAT14                                --------->ANAC58                                                    -     --------->AHL20(2)         --------->ANAC58                          --------->AHL20(2)      <--    *TSS <---------ICU4       ---------->DOF2                             <---------AHL20(2)     ---- -------LBD16         <---------TOE1(3)                                   ----------->TBP       <---- ------ANAC46         <---------TOE2(3)       ----------->GT1  <---------AHL20(1)            <-------   ctcggaattaaaaatttcgaatttagggttcttcaagcacagtggaaagtgtttaatatttgtaatatgttttgatataaatatgtctgatttcagttat  9289700                                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                              <---------DEAR3(2)                                                             <---------TOE1(2)                                                            --------->ALFIN1                                                            <------NtERF2                                                          <---------ANAC58                                                          <---------ANAC58                                                          --------->ALFIN1                                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                                      xxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxx>smallRNA(se3)              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxxx>smallRNA(se3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxx>smallRNA(fl3)               xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            ---------->DOF2       xxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->ICU4                             xxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       *TSS                    <------NtERF2     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->DAG2               xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <-------TEIL --------->DOF2     <------MYB46(1)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                < -------AHL20(2)    <------MYB83          xxxxxxxxxxxxxxx>smallRNA(si3)                            -- ----->AHL20(2)    <---------AtMYB61  <-----------RAV1(2) <---------ANAC46           <---------GLK1(2) -----YAB1        <--------P  ------>NtERF2  xxxxxxxxxxxxxxxx>smallRNA(s)<---------ALFIN1          <- --MYB52(1)    <------NtERF2xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(se3)<----------DOF2   taaaaagtcaagatggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcgtgggttcaaatcccactcttgacatattctttttgta  9289800           <---------AHL20(2)       <---------AHL20(2)       --------->AHL20(2)                               --------->AtLEC2      --------->AHL20(2)                --------->ICU4  <---------YAB1 -----------GT1                      <------ZmHOX2a(1)  ----------->GT1 ------->AHL20(2)              <---------YAB1    ---------->DOF2     ---------->DOF2 --------AHL20(2)            --------->YAB1    --------->YAB1  ---------->DOF2    <---------YAB1 ----   tttaactatttatttttttcttatatgaaaaacataataggaatatttatcaaaagtcatgaaaataaagaaaaagaagagaagatgataagagagaaca  9289900         --------->At4g35610                                           --------->AHL20(2)         <---------At4g35610                                          <---------YAB1    <---------ICU4                                                 --------->AHL20(2)               <    --------->ATHB51                                               <---------AHL20(2)        <-------    --------->ATHB12                                              <---------MYB52(1)  <---------ICU4<    <--------HAHB4                                              ----------->GT1       --------->ATHB51    --------->YAB1                                      --------->ANAC58              --------->AHL20(2)   --------->AHL20(2)   <---------At4g35610             <---------ANAC55(2)           <---------AHL20(2)   --------->ICU4   <----------DOF2                     --------->ANAC58             <---------YAB1 < --------->YAB1     --------->TOE2(3)                   ----------->GT1--------->YAB1--------->ICU4-- ------>DOF2  --------->ZAT6      <----------DOF2       --------->ANAC55(2)      <---------ARR11(3)<-   aaagaataattagctaacacaactttagatgatactctttttttgtttgttttaagacaggtaattcagttaattataaactagataattatttctcgtg  9290000      <---------ANAC58      <---------ANAC46      <---------ANAC58    <------MYB46(1)    <------MYB83  <--------P <---------ANAC58 <---------ANAC58 <-------GAMYB ------MYB83                                ---------->DOF2 --ANAC46      <---------ANAC55(2)         <------ZmHOX2a(1) ---------MYB46(3)<-------TEIL         <---------ANAC46                                             < ------MYB46(1)--------->ANAC58   --------->CCA1(2)                                                 < ------->MYB59 --------->ANAC58  --------->ARR11(3)               <----------DOF2                  <- --------AtMYB61  ------->TEIL   <---------ARR11(3)    <---------ANAC46                <---------YAB1   tttggttggcttaaaacacgtacatctgtgtttgagatatgtcgaggaaagtgttcgtcgtgggaagacttttcttccaacttgaaattttgatacaaac  9290100  Previous    Next  AGI:  At4g16470.1    Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G11290.1); similar to hypothetical protein OsJ_021177 [Oryza sativa (japonica cultivar-group)] (GB:EAZ37694.1); similar to Os06g0625800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058115.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 9287884    to: 9289604    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g16475.1    Description:  pre-tRNA. tRNA-Leu (anticodon: CAG) Range:  from: 9289707    to: 9289787    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version