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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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1        10        20        30        40        50        60        70        80        90        100 
            ------->TEIL
         <---------YAB1
       -------->HAHB4
       <---------ICU4
       --------->YAB1
      --------->ICU4
    <---------ICU4
    --------->YAB1                     <---------GLK1(2)
   <---------YAB1  <---------------AtSPL8
   --------->ICU4  --------------->AtSPL8
  <---------AHL20(2)          <---------TOE1(3)                                     --------->DAG2
  <---------AHL20(1)    ----------------->AGL1            --------->YAB1           ---------->DOF2
  --------->AHL20(2)   <-----------------AGL1           --------->GLK1(2)  ----------->GT1
 --------->YAB1<----------DOF2<---------TOE2(3)        <---------GLK1(2)<------ZmHOX2a(1)   <-------
 
tgcattataattatgaatcttttttgtaccattaaggttacagattccacaattcaaagaatcttaagaaaaacaggacagaaacaaaaagtatagaatt  8484400
                             <-----------GT1
                         --------->ATHB51
                         <---------ICU4
                         <--------HAHB4          ----------->GT1
                        --------->ICU4     --------->At5g28300
                        <---------YAB1<---------ZAT14
                      --------->YAB1  --------->ZAT14                 ---------->DOF2
 <---------ZAT6      <---------YAB1 --------->ANAC46                 <---------WRKY12
--GLK1(2)      --------->MYB52(1) <---------ALFIN1                 <-----------HVH21            <---
 
tgtagtgagaattggagataactgatcataattaacaacacttcactgtaacatgtgaaacaactaaaaccgtcaaagtcaaacaaatctaaaaccagtt  8484500
                                                                                    --------->ATHB12
                                                                                    <--------ATHB1
                                                                                    <---------ICU4
                                                                                    --------->ATHB51
             <---------MYB59                     <----------DOF2                   <---------AHL20(2)
  --------->MYB59                                <---------DAG2       --------->AHL20(2)
<---------MYB52(1)                        ---------->DOF2             <---------AHL20(2)  <---------
------At5g28300--------->MYB52(1)  --------->ANAC46             ----------->GT1    <---------ATHB51
 
acagttatgtctttgaactaactgcattgacttcaaacacaaaaccaaagtacttttttttttttttttgtaaaaaaatgaattgaataattggtccatt  8484600
                                                           <---------WOX13(1)
                                                         --------->ATHB12
                                        <---------GLK1(1)<---------ICU4
                           --------->AHL20(1)           --------->ICU4
      <---------GLK1(1)    --------->AHL20(2)           <---------YAB1
--------->TOE1(2)          <---------AHL20(2)    --------->GLK1(1)                        <---------AHL20(2)
--------->TOE2(2)          <---------AHL20(1)    <---------GLK1(1)                        --------->AHL20(2)
------------WRI1     --------->YAB1---------->DOF2   <---------YAB1                    --------->TOE2(3)
 
aaacctatgaaatctgaatttctatgacaataaattagaaaagaattcagagaaatctgataattggcacaaaaaaacagcaaaacatttcattaaaata  8484700
                           <---------YAB1
                         --------->YAB1
                         -------->ATHB1
                         <---------ICU4
                         --------->ATHB12
                         <--------HAHB4
                        --------->ICU4
                        <---------ATHB12
                        <---------ATHB51
                  ------>MYB83
                  ------>MYB46(1)
                --------->AtMYB61
                <---------MYB59
             >>>>>>>>>>WRKY40
             >>>>>>>>>>WRKY62                                   --------->ARR14(2)    ------>ZmHOX2a(2)
             <---------WRKY18(1)                                <---------ARR14(2)   <------ZmHOX2a(2)
             >>>>>>>>>>WRKY18                             --------->GLK1(2)         <---------ARR14(2)
            --------->WRKY12                              ------->TEIL         <---------ARR14(2)
            --------->WRKY38(1)                           --------->ARR14(2)   --------->ARR14(2)
            --------->WRKY45   <---------ZAT6             <---------ARR14(2)  <---------GLK1(1)
          <----------DOF2--------->ATHB51    ----------->GT1<-----------------AG    --------->ARR14(2)
    --------->ANAC46  --------->WOX13(1)    >>>>>>>>>TBF1<---------CCA1(2)    --------->GLK1(1)
 
caaaaacacagaactttgaccaaaccaattattagagttatacagaagaagaaaaacctcgaatctggatttggaaattggagttccgatctgagtaata  8484800
                         --------->ANAC58
                         --------->ANAC46
          --------->ARR14(2)
          <---------ARR14(2)
         <---------GLK1(1)
         --------->GLK1(1)          --------->AHL20(2)
     <---------ANAC46    --------->ANAC58
--------->At4g35610     ------->GAMYB                                                  <---------TOE2(3)
<---------At4g35610    <---------ALFIN1                                   <----------DOF2<------ZmHOX2a(1)
----------->RAV1(2)  ----------->RAV1(1)                   <-----------HVH21   <---------CCA1(2)
 
ctcttctgaggggtatccattttccaacacacaaacaaaaaaaatcacatccacaaacacagtgtcactctctctctctttcttatctctgaggaaagtc  8484900
                                                                       --------->ARR11(3)
                                                                       <---------ARR11(3)     <<<<<<
                                                                     ----------->ARR10        <-----
                                                               <------ZmHOX2a(1)             -------
                                                             --------->ALFIN1               <-------
          <---------TOE2(3)                               --------->ALFIN1                 <--------
    <---------AHL20(2)                       <---------ZAT6 <------ZmHOX2a(1)            --------->DAG2
    --------->AHL20(2)                  <----------DOF2  <------ZmHOX2a(1)     ------------>CBF
  <----------DOF2               ----------->TBP    >>>>>>>>>TBF1  <------ZmHOX2a(1)    ---------->DOF2
 
tcagtcttttattaagtttctctctctctctctctatatatgtctttagtggaagaagaaggaggaggaggagagatattcaaacaatagcaaaggcggg  8485000
                           --------->ZAT6
                           --------->AtMYB61
                           <---------ALFIN1
                         ------>MYB46(1)
                         ------>MYB83
                        --------->ANAC46
                        <---------ALFIN1
  --------->ZAT18      --------->MYB46(3)
<<<<E2Fb               <---------MYB55(2)                     <----------DOF2
-NtERF2              --------->PCF2                 ----------->RAV1(2)                          ---
-->LBD16       <---------GLK1(1)                  <---------ALFIN1                               <--
--ANAC46       --------->GLK1(1)        <----------DOF2 <---------CCA1(2)                        ---
-LBD16   <-----------HVH21--------->MYB46(3)   ----------->HVH21         --------->AHL20(2)     <---
 
aaatggggactatgtcagaaatcagacccaccactactatcaactttgccctaacacctgtctctctttctctgtattatatacaacaagtgtctctatg  8485100
                           ------->TEIL
                        <---------YAB1
                      <---------ICU4
     ------->TEIL     --------->YAB1       <----------DOF2
------>ARR14(2)      --------->ICU4       <---------ANAC58                   <-----------GT1
-------ARR14(2) --------->At5g28300       <---------ANAC58            --------->ANAC46
---->TEIL   --------->ANAC46          <----------DOF2                 --------->ANAC55(2)     ------
------CCA1(2)  ----------->GT1<----------DOF2                     --------->YAB1             -------
 
tatctgtgtatgtataagcagtgaataatgaatctttgatgctttgctttgtctgcaatctaagtccaagtataagtaatatactctctctcgattccta  8485200
        --------->DAG2                        <-----------GT1                  ----------->GT1
       ---------->DOF2                    <---------DAG2                   <---------ZAT14
    --------->YAB1                        <----------DOF2                  --------->ZAT18
  --------->AHL20(2)  <XXXXXXXXXXXXXXXXXXXXMIR837-3P                       --------->ZAT14       <--
<----------DOF2------->GAMYB          ---------->ID1                  <---------YAB1           <----
>ZmHOX2a(1)  >>>>>>>>>MYB98        <----------DOF2 <----------DOF2 <---------YAB1     --------->YAB1
-->TOE2(3)  --------->MYB52(1)  <-----------GT1---------->ID1      --------->ICU4   --------->AHL20(2)
 
aaccttttaataaagtaacggacatcagttttttttttcttttcccttttttctcttttttgttttagttattattagtggacagaaaataatagaataa  8485300
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AGI:  At4g14770.1   
Description:  tesmin/TSO1-like CXC domain-containing protein. similar to TSO1 (CHINESE FOR 'UGLY'), transcription factor [Arabidopsis thaliana] (TAIR:AT3G22780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71212.1); contains InterPro domain Tesmin/TSO1-like, CXC (InterPro:IPR005172)
Range:  from: 8481369    to: 8484820    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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