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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
WOX13(1)
<------
ZmHOX2a(1)
--------->
TOE1(1)
<----------
DOF2
--------->
TOE2(2)
--------->
ANAC58
--------->
DAG2
--------->
TOE1(2)
----------->
HVH21
----------->
GT1
<-------
TEIL
------>
MYB83
----------->
GT1
--------->
ANAC58
------>
GT1
---------->
DOF2
--------->
TOE2(3)
------>
MYB46(1)
<----------
DOF2
gaaacaaggtaatgtaaaaagcagactttagaccttagattcaacctaggacctagcaatcgaagtagtaagaacaactttgacgcgctaaaattcacaa
8134500
---
----
<-----
<------
<------
--------->
ANAC58
<------
------->
GAMYB
--------
--------->
ANAC46
---------
------->
GAMYB
<----------
DOF2
--------->
ANAC58
--------->
YAB1
--------->
ANAC46
<---------
MYB52(2)
--------->
ANAC58
----------->
GT1
<---------
ATHB12
--------->
ANAC58
<---------
MYB59
--------->
ANAC58
---------->
DOF2
------>
MYB83
--------->
ANAC58
--------->
DAG2
<-------
TEIL
--------->
TOE2(3)
------>
MYB46(1)
<---------
WRKY12
---------->
DOF2
<---------
TOE2(3)
<-------
TEIL
--------->
MYB46(3)
gagttcaacgaaacaatctctaatttcataaaggaactaactttaggttcacaacgcaaacaaatacatcaaagaagaaaataaactcac
caatcgtcaa
8134600
<---------
ICU4
--------->
YAB1
--------->
ICU4
<---------
YAB1
<---------
ATHB12
---------->
DOF2
--------->
SPL7
------>
TOE2(3)
<---------
ANAC58
----->
ANAC46
<---------
ANAC58
--------->
AHL20(1)
----
DOF5.7(2)
<---------
ANAC46
<---------
YAB1
--------->
AHL20(2)
---
WRKY45
--------->
ANAC55(2)
--------->
ARR11(3)
<---------
AHL20(2)
---
WRKY12
<---------
ANAC55(2)
<---------
ARR11(3)
-------->
P
--------->
AHL20(2)
<--
---
WRKY38(1)
<---------
ANAC58
<---------
ICU4
--------->
ANAC58
-----
->
DOF5.7(2)
<---------
ANAC58
--------->
YAB1
--------->
ANAC58
----------
>
TOE2(3)
<-----------
RAV1(2)
--------->
WOX13(1)
<---------
LBD16
--------->
YAB1
----------->
GT1
cgtaaaagtaacccagaagatggattgcgtaaggccaatcatcatgatattcaattccttcggaagcaac
ctataaaaaaaattaagaagcgataaatcg
8134700
--------->
TOE2(3)
--------->
TOE1(3)
--
--------->
ANAC46
---
--------->
ZAT14
---
--------->
ANAC46
<---------
ZAT14
<--
<-----------
GT1
--------->
bZIP60(2)
----
-------
TOE1(2)
<---------
ARR14(2)
--------->
MYB52(1)
----------->
RAV1(2)
<---
---->
TOE1(2)
--------->
ARR14(2)
------->
TEIL
------->
GAMYB
<-----------
GT1
----
>
DOF2
--------->
ZAT6
--------->
ANAC46
<---------
ATHB12
--------->
MYB46(3)
------->
TEIL
<---
aacgattaacaccacaaaatccacttcacaaaaccctaatgaacatcagaaacaacgacagcgagagaaattacgaac
ctgaagcatgagagtatcgcag
8134800
======================
HOX2a_HOX2a
--------->
TOE2(3)
<---------------
AGL15
--------->
TOE1(3)
--------->
HSFC1(2)
<---------
HSFC1(2)
------>
NtERF2
<-------
TEIL
<------
NtERF2
--------->
CCA1(2)
------>
NtERF2
------>
ZmHOX2a(1)
--------->
RAP2.6(2)
<------
ZmHOX2a(2)
---------->
DOF2
--------->
HSFB2a(1)
--------->
ARR14(2)
--------->
HSFC1(2)
<---------------------
WRI1
---------->
DOF2
<---------
ARR14(2)
<---------
HSFC1(2)
------->
MYB52(1)
<---------
ATERF1(2)
--------->
AGP1
<---------
ZAT14
------>
GLK1(1)
<---------
RAP2.6(2)
--------->
ARR11(3)
--------->
ZAT14
------>
CCA1(2)
<---------
DEAR3(1)
<---------
ARR11(3)
<---------
ZAT18
-------
GLK1(1)
--------->
ATERF1(2)
--------->
HSFB2a(1)
--------->
ZAT18
<----------
DOF2
----->
ARR11(3)
--------->
RAP2.6(3)
---------->
DOF2
<---------
YAB1
<---------
HSFB2a(2)
------
ARR11(3)
<---------
ARR14(2)
<-----------------
AGL1
<---------
ANAC58
--------->
HSFB2a(2)
----->
ARR14(2)
--------->
ARR14(2)
----------------->
AGL1
<---------
ANAC58
--------->
ZAT14
---
------
ARR14(2)
<------
ZmHOX2a(1)
----------------->
AG
<---------
ANAC46
<---------
ZAT14
<--
atatcggcgattttgtcaaaggatttggcggccaaagcttccttaacaggcgaaagatccat
gacttgtttcgattgcactactctcgaagcttttgcga
8134900
>>>>>>>>>>
GT-3b
----------->
GT1
---------->
DOF2
--------->
LBD16
--------->
LBD16
<---------
LBD16
<-----------
RAV1(2)
<-----------
GT1
<---------
ZAT14
--------->
GLK1(2)
--
--------->
ZAT14
--------->
AHL20(2)
------------>
CBF
--
--------->
ANAC58
<---------
AHL20(1)
<---------
ICU4
---
--------->
ANAC46
--------->
AHL20(1)
--------->
GLK1(2)
----
*
TSS
--------->
ANAC58
<---------
AHL20(2)
--------->
YAB1
-----
------>
At4g35610
--------->
AtMYB61
--------->
AHL20(2)
--------->
YAB1
-----
-------
At4g35610
--------->
MYB46(3)
<---------
AHL20(2)
--------->
AHL20(2)
--------
agatgacaattctac
tcccaaaaccactccagggaaaagaaaaataaattctgtgagatttacaggttttaataatcttttcaatacggtttacttaaac
8135000
--------->
YAB1
>>>>>>>>>>
WRKY43
<---------
YAB1
>>>>>>>>>>
WRKY26
<---------
ATHB12
>>>>>>>>>>
WRKY38
>>>>>>>>>
E2Fd
>>>>>>
<------------
CBF
>>>>>>>>>
E2Fc
>>>>>>
--------->
AHL20(2)
--------->
LBD16
------>
NtERF2
<---------
AHL20(2)
------>
NtERF2
-------
--------->
AtMYB61
<<<<<<<<<<
E2Fa
--------->
ANAC58
<<<<<<<<
---->
MYB83
<---------
MYB59
--------->
ANAC46
<---------
DEAR3(2)
---->
MYB46(1)
--------->
ZAT18
--------->
ANAC58
------>
NtERF2
--------
------>
ORA47(1)
--------->
ANAC58
--------->
ANAC58
--------->
DEAR3(1)
----->
DEAR3(1)
----------->
GT1
<---------
ZAT18
<---------
LBD16
--------->
ANAC58
--------
---->
DEAR3(2)
------>
MYB46(1)
--------->
ANAC58
<-----------
GT1
--------->
DAG2
--------
---->
MYB46(3)
------>
MYB83
<----------
ID1
--------->
MYB52(2)
---------->
DOF2
<--------
-->
DOF2
<-----------
GT1
<------
ZmHOX2a(1)
--------->
TOE2(3)
--------->
YAB1
<---------
MYB46(3)
cgaccaaaaaattgaccaaacacaagaggataaatgggccaagcccactaagccttagtttcccgccaaacatcataaagccacccggtctgttcccgcc
8135100
--------
<-------
------>
ZmHOX2a(1)
---------
==========
--------->
MYB52(1)
------>
ZmHOX2a(2)
--------->
MYB46(3)
===========
>>>
E2Fc
<------
ZmHOX2a(2)
>>>
E2Fd
<------
NtERF2
<---------
ARR14(2)
-->
LBD16
------>
NtERF2
--------->
ARR14(2)
<<
E2Fa
<---------
ANAC58
<---------
ARR11(3)
->
ANAC46
<---------
ALFIN1
<---------
ANAC58
--------->
AGP1
->
ANAC58
--------->
ANAC58
<---------
ANAC46
--------->
ARR11(3)
->
ANAC58
--------->
ANAC58
--------->
At4g35610
<---------
GLK1(2)
-
LBD16
*
TSS
<---------
ALFIN1
<---------
At4g35610
<------
NtERF2
<
aaaataacaaacagtctc
tctcactctcacacacactctctctctctctctgtagctctctcttggcgcgagttctacc
atggccgaatcagatcctata
8135200
<------
ZmHOX2a(1)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
------->
AGL15
--------->
ANAC58
--------
AGL15
<-------
GAMYB
--------->
ANAC58
-------->
AGL3
<----------
DOF2
----------->
GT1
--------->
TOE1(3)
<---
========
HOX2a_HOX2a
--------->
MYB52(2)
--------->
TOE2(3)
<----
========
HOX2a_HOX2a
<---------
MYB52(1)
<---------
GLK1(2)
------>
ZmHOX2a(1)
---------
TOE2(3)
---------->
ID1
<-----------
GT1
<---------
DAG2
<-----------
GT1
<---------
ATHB12
ttgaggaagaagatgcgattttcgtcttcttcagttcgttatactacctctcagaaccttatggcaagcaaattacgaactcagagcaatcgttcctccg
8135300
<-----------
TGA1
--------->
ANAC46
------>
ZmHOX2a(2)
<---------
GLK1(1)
<---------
HSFB2a(1)
--------->
HSFB2a(1)
--------->
GLK1(1)
<------
ZmHOX2a(2)
--------->
ARR14(2)
<-----------
ARR10
------->
TEIL
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ARR11(3)
----------->
GT1
<---------
CCA1(2)
---------->
DOF2
--------->
ANAC55(2)
<------
ZmHOX2a(2)
--------->
ANAC58
----------->
HVH21
--------->
ANAC58
<-----------
HVH21
--------->
ANAC55(1)
<-----------
TGA1
<---------
ANAC55(2)
<---------
ANAC58
------
MYB52(1)
<---------
LBD16
<---------
ANAC58
-----
SPL7
<-----------
HVH21
--------->
ANAC46
----------->
GT1
--------->
LBD16
ttcgatttgcatccccattgtctcacattgtcacggatcttcgtcaccatcatgcgtcaccgatcaaagggaaaattgttactcaaatgccccgaacttg
8135400
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AGI:
At4g14110.1
Description:
COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9). Identical to COP9 signalosome complex subunit 8 (CSN8) [Arabidopsis Thaliana] (GB:P43255;GB:Q8GWZ4); similar to hypothetical protein [Vitis vinifera] (GB:CAN67908.1); contains InterPro domain Signal recognition particle, SRP19 subunit; (InterPro:IPR002778)
Range:
from: 8132881
to: 8134915
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g14120.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23740.1)
Range:
from: 8135119
to: 8136962
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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