Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           ------>ZmHOX2a(2)                                                        <---------GLK1(1)                                                        <------ZmHOX2a(2)                                                        --------->GLK1(1)          --------->ANAC58                                                       <-----------ARR10--------->TOE2(1)                                                       <---------ARR11(3)          --------->AtLEC2                                                       <---------ARR14(2)          --------->ANAC58                                                       --------->ARR14(2)        ---------->DOF2                                                       --------->ARR11(3)       <---------ATHB12                                                       --------->ARR14(3)      ------>MYB83         <---------ARR11(3)                            <---------AGP1   --------->TOE1(1) --------->TOE2(3)                                     <---------ARR14(3)<---------SPL7 -------ALFIN1          <-----------GT1      ==================HOX2a_HOX2a     ------>MYB46(1) -->ANAC58          <----------DOF2          ------>ZmHOX2a(1)         --------------->AtSPL8    <--- -->ANAC58        <------------------------ANAC81--------->AtLEC2  <-----------GT1--------->WOX13(1) >GLK1(1)--------->ARR11(3)<----------DOF2   ===================HOX2a_HOX2a   --------->WOX13(1)<----   aaacctcataagctcttctctccttttcactttcacttcttctgttcctccatggaagatctctcttattcacatcgtaccaatcaagcaaacccattct  7497200                                    --------->ARR11(3)                                   <---------CCA1(2)                             ====================HOX2a_HOX2a                             ------>ZmHOX2a(2)                            <------ZmHOX2a(2)                           <---------GLK1(2)                           --------->ARR14(3)                           --------->ARR11(3)                           <---------ARR11(3)                           --------->AGP1                                         <<<<<<<<<TBF1                           <---------ARR14(2)                                  <<<<<<<<<TBF1     <---                           --------->ARR14(2)                               <<<<<<<<<TBF1     <<<<<<<                          <---------GLK1(1)               <---------At4g35610<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          --------->GLK1(1) ---------->DOF2               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     ---------->DOF2<---------ARR11(3) <<<<<<<<<TBF1     <<<<<<<<<TBF1     <<<<<<<<<TBF1                 --------->ZAT6------>ZmHOX2a(1)   <----------DOF2 <---------At4g35610  <<<<<<<<<TBF1 ---------------------ANAC81=====================HOX2a_HOX2a    <---------At4g35610  <<<<<<<<<TBF1 <- -----YAB1<-------TEIL   ----------->ARR10------>ZmHOX2a(1)  <---------At4g35610<xxxxxxxxxxxxxxxxxxxx   gattttctgagtttcattttcactaaagagatcctctatatctcctccaagcgcttcttcttctgcttctgcttcttcttcttcttcttcttcttcttct  7497300                                       <---------At4g35610            <---------At4g35610  <---------At4g35610      <<<<<<<<<TBF1           xxxxxxxxxxxxxxxx>smallRNA(i)     <---------At4g35610 <---------GLK1(2)         <---------At4g35610              <<<<<<<<<TBF1 ------At4g35610    <----------DOF2 <---------At4g35610  <<<<<<<<<TBF1          <----------DOF2 <<TBF1  <---------At4g35610  <---------At4g35610 <----------DOF2             <---------At4g35610 --------YAB1<------------------------ANAC81 <---------At4g35610    <----------DOF2         <-------- xxxsmallRNA(se3)   --------------------->WRI1    <---------DAG2  <---------At4g35610     <---------At4g35610   tctgattcttcttctgcttcttctttgtctgcttctgcttctgcttcttctgctttttcttcttcttctgcttctcgttctgcttctcgttctgcttctc  7497400                    <---------ALFIN1                 <---------ETT(2)                    --------->ATHB12             --------->ANAC58           <-----------GT1                        ---------->DOF2                 --------->ANAC58  <---------At4g35610                        <------ZmHOX2a(1)              ---------->DOF2     ----- --DOF2<----------DOF2 <----------DOF2   <---------ANAC46            <---------AtMYB61         <-----   gttctgcttcttttttctctcgacactttctcatgagtttctcgcgaggagcaaaagattgggacatcgttttggtcttaaagctcgaaactttgcaatg  7497500                                            --------->ARR11(3)                                            <---------ARR11(3)                                          --------->WRKY12                 <------NtERF2                                         <---------MYB52(1)               --------->LBD16                                        <-------GAMYB                   <---------LBD16                                   ----------->HVH21                    ------->MYC3              <--                                  --------->DEAR3(2)                    <-------MYC3--------->ANAC58                               ---------->DOF2------>ZmHOX2a(2)        <---------O2 --------->ANAC46 ---->YAB1              ---------->ID1 <---------MYB46(3)              --------->O2 --------->ANAC58 ----ATHB12  <----------DOF2  ----------->HVH21                      <---------ALFIN1       ---------   aaaacttagaatggtctttggattttgtctctgtgaagcgaccgttgatctttcgaatgtagggtttagagccacgcggagaagacaagccattcaatta  7497600                                                      --------->YAB1                                                     <---------YAB1                                                   <---------ICU4                                                   --------->YAB1                                                  --------->ICU4       --------->ZAT18                          <---------ICU4       <---------ZAT18                       <---------AHL20(2)                                  <--- <------ZmHOX2a(1)  --------->HSFC1(2)   <---------RVE1(1)                                       ---- ----ZmHOX2a(1)     <---------HSFC1(2)  <---------ARR11(3)     <---------LBD16 ---------->DOF2 ------ >WOX13(1)    <------------CBF          --------->ARR11(3) <----------DOF2 --------->AtLEC2 ---------   ggaggaatgtggactaaattgaaacttccatatagaattagagatattaaaaattatgatacttttgggggatgactatgcaaaagaacataacttctgg  7497700                                                   <-----------GT1                                                --------->DOF5.7(2)                       <------ZmHOX2a(1)       --------->TOE2(3)           --------->AHL20(2)                  --------->TOE1(3)    ----------->GT1---------->DOF2            ----------->GT1                                      -- ------ANAC46 <---------AHL20(1)         --------->ANAC46                                          <- ------->GT1  --------->AHL20(1)     <---------WOX13(1)                                            <- --->LBD16<---------AHL20(2)<------------CBF--------->MYB52(1)                         ----------->RAV1(1) -->RAV1(2)<---------AHL20(2)       <------------CBF                      --------->ANAC46     ------   ggtaaaatgtaatttatatattaaaggactaattgtctaattgacacaacgttaaacagtctttctatgcccatacacaaaaacaacaacaacaaaaaaa  7497800                                                                                              -------                                                                                             <-------                                                                                          <---------HSFB2a(1)                                                                                          --------->HSFC1(2)   --------->MYB59                                                               <------------CBF ------->ARR11(3)                               <------------CBF            <---------O2  --------->HSFB2a(1) --------GLK1(2)                   --------->ANAC46                  ---------->DOF2      <---------HSFC1(2) --------ARR11(3)                  --------->AtLEC2               --------->TOE2(3)----------->GT1 -- ---->DOF2                      ------>ZmHOX2a(2)    --------------->AtSPL8 <---------ANAC46<--------   agattttggtaatcaaacccaaaactgaatgtgatccatgctactatctaaattgtctgtacatattatctcaaagtcacttggattgtagaattttcca  7497900                                                                              ------>ZmHOX2a(1) ----->CBF                                                                <---------RAP2.6(3) ----GT1                                                                  ------>NtERF2 ------->TOE2(3)         <------ZmHOX2a(1)                                --------->ORA47(1) ---GT1  --------->TOE2(3)                ------>ZmHOX2a(1)              --------->DEAR3(1)        --   atctcaaattatctcaaactgaatgcaggaactaaacattcttcctctatacaatcttcttcccctattctatcgccgtccttgatgtccagataatagc  7498000                                                                                                    -                                                                                                   <-                                                                                                   --                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            <--------         ================================================bZIP_DOF                           ---------         <----------DOF2                                                                    <--------    -------->P                                                                              ---------    --------->MYB52(1)                                                    --------->TOE2(3) <--------   ------->GAMYB                                                  --------->MYB46(3)        ---------   --------->MYB55(1)                          --------->TGA1a   --------->ANAC58           <--------  <---------MYB52(2)                           <---------TGA1a   --------->ANAC58           <--------  <---------MYB111(2)                      --------->ANAC58      ------>MYB46(1)            <--------  <---------MYB55(2)                       --------->ANAC46      --------->ANAC46          ----------  --------->MYB46(3)                       --------->ANAC58    --------->AtMYB61         ----------->HVH21  <---------MYB111(1)  ==================================MYC_MYB ------>MYB83            ----------->TGA1 ------->REM1(1)       -------->P ----------->GT1             --------->MYB46(3)       --------->ANAC55(2)   tacaactaccgcttagacgctcgtctacctgcaatggagtaatacacacaagtgagaaactaaaaccacccaaaaacattatcaagttcaagtgacgtga  7498100  Previous    Next  AGI:  At4g12740.1    Description:  adenine-DNA glycosylase-related / MYH-related. similar to hypothetical protein [Vitis vinifera] (GB:CAN71629.1); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265); contains InterPro domain NUDIX hydrolase, core; (InterPro:IPR000086); contains InterPro domain NUDIX; (InterPro:IPR015797) Range:  from: 7494575    to: 7497593    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g12750.1    Description:  sequence-specific DNA binding / transcription factor. similar to HB-1 (homeobox-1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G28420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47883.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81987.1); contains InterPro domain Homeobox; (InterPro:IPR001356) Range:  from: 7497811    to: 7503640    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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