Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               ----------->GT1                                                      <------ZmHOX2a(1)                                             --------------->AGL15                                             <---------------AGL15            <---------YAB1                  ----------------->AGL3            <---------AHL20(2)        --------->YAB1<---------TOE2(3)    <-----------GT1        <----------DOF2  <-----------------AGL3 ---------DOF2            <---------ANAC58  ----------------->AGL2                        <---------DAG2 --------DAG2             <---------ANAC58  <-----------------AGL2       ------->TEIL     <----------DOF2   actttttaactgatattatttgagttttgctttgctaaaatcatatactatatttaggaagaattgttagaaatgcacattttccattaccacttttcaa  6907300                                 <----------DOF2                                 --------->TOE2(3)                              <---------AHL20(1)                              --------->ARR11(3)                              --------->AHL20(1)                   <---------DAG2     --------->At4g35610      <---------ARR11(3)    --------->TOE2(3)     <---------CCA1(2)       --------->RVE1(1)      <---------MYB59<----------DOF2     <---------At4g35610     --------->CCA1(1)      <---------------AGL15                    <------- <-----------HVH21     --------->YAB1  --------->GLK1(2)        <-----------GT1--------->TOE2(3)  <--   aaatgtcatctctctaaaacatttatcaaaaatatctttaaaatctgaaatatacctaaataagtgtaactttataagaaaacttaaacaaactactttt  6907400                                                                           <---------DAG2                                                                           <----------DOF2                                                                        --------->ARR11(3)      <----                                                              ----------->GT1                   -----                 --------->AHL20(2)               <---------YAB1        <---------ARR11(3)     ------    ----------->GT1       <---------AtLEC2      <-----------GT1     ---------->DOF2         --------- ---DOF2    <----------DOF2                    --------->DOF5.7(2)<---------YAB1            <-------- ---------GT1    <---------AHL20(2)          <---------MYB46(3) <---------ZAT6      <----------DOF2   atacgtttgtaaaactttataaatttttggatggagtctctgaatagtcgttaccattttgaagtagtattaaagaacttttttttctttgaaaaatcct  6907500                   <---------ANAC58                   <---------ANAC58                         <---------ATHB12     <---------ZAT6--------->TOE2(3)                        --------->MYB46(3)     ----------->GT1                                      <-----------GT1 ------DOF2 --------->AHL20(2)                      <---------YAB1                 ----------->GT1 ->ZmHOX2a(1)<---------YAB1                        <---------AHL20(2)       ---------->DOF2 --->TOE2(3)<---------AHL20(2)                     --------->AHL20(2) <---------MYB52(1) >ARR11(3) --------->YAB1                        <---------YAB1   <---------At5g28300           ----- -ARR11(3)<---------YAB1           <----------DOF2--------->YAB1 <-----------GT1 ---------->DOF2<----   ttaaacagtgttattaaaattccttgatgtcaatagtctttaaactgtgttattaaaattcaaccattcaccgttttgcaaagaaaagtatatagaatat  6907600                                                       <------------CBF                                                <---------RAP2.6(3)                                                <---------DEAR3(2)                                             ------>NtERF2                  <---------YAB1                              <---------YAB1 --------->MYB52(1)           --------->YAB1                         ----------->GT1  <---------ZAT2<---------------AtSPL8                 <-----                         <------MYB83     <---------At4g35610        *TSS --------->AHL20(2) <-------     <----------DOF2     <------MYB46(1)  --------->At4g35610        ------------>CBF       <-------- ---->ANAC55(2)         --------->MYB59   ----------->RAV1(2)       --------->YAB1          <-------- -----ANAC55(2)   ------------>CBF        --------->ZAT2--------------->AtSPL8     <-----------GT1   gtattctcttttgttttgacatcaatttggttatacttatcttcagctgccggtttgaattgtactccaaacacaattataaatctcaccattttttatt  6907700     <----------DOF2                                               --------->ATHB12     <---------DAG2                                                --------->YAB1                <--- ----YAB1                                                          <---------ICU4   --------->ARR11(3) ----GT1                                                          <---------ATHB12  <---------ARR11(3) -AHL20(2)     ---------->ID1                           <----------DOF2        --------->LBD16------- -YAB1   <---------YAB1    <---------ALFIN1         <---------CCA1(2)          ------>ZmHOX2a(1) ----   atacacactttattcttgtctctatagttccacatctcaatctagctctcttctctatctttctctaaatcatgggtcttcctgaagatttcatcaccga  6907800                                   --------->TGA2(2)                                 --------->bZIP60(1)                                 <---------ANAC55(2)                                 --------->ANAC46                                 --------->ANAC55(2)                                <-----------STF1                         <---------GLK1(2)                         --------->ARR11(3)                --------------->AGL15          --------->ANAC46   <----------DOF2     --------->GLK1(2)   <---------ARR11(3)    <---------GLK1(2)---------->DOF2          --------------------->WRI1                          <--   <---------At4g35610<---------TOE2(3)   <---------MYB52(1)               ------>ZmHOX2a(1)      --- ------ZAT2    --------->ANAC55(2)<-----------TGA1                      ---------->ID1            <-- -->DEAR3(1)   <---------ANAC55(2)<-----------HVH21         <---------DEAR3(1)                    --- ----->ZAT2   <-------TEIL   <---------DAG2   <----------DOF2       <----------DOF2  --------->ETT(2)   gcttcagattccaagttacatattaaagatactttacgtcatcggtttctttagagacatcgtcgatgctctttgtccttacattggtctacctcgtttt  6907900                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                                 <---                                    <---------ALFIN1                                             <---                                 ----------->HVH21                                               <---                            ----------->HVH21                                                <-------                           ------>ZmHOX2a(2)                                                 --------                          <------ZmHOX2a(2)                                             <------MYB83                         --------->ARR14(2)                                             <------MYB46(1)                         <---------ARR14(2)                                            --------->MYB59                         <-----------ARR10                                         <---------DEAR3(2)                      --------->MYB46(3)                                           --------->MYB55(2)                     --------->ANAC46                                              <---------MYB46(3)                   <---------ALFIN1<---------REM1(2)<---------WRKY12              --------->ALFIN1<--                  <---------At4g35610 --------->ANAC58<---------At4g35610         <---------AtMYB61            <---------ARR11(3)   --------->ANAC58  --------->TGA2(2)             <---------MYB52(1)--   --------->AtMYB61------->TEIL--------->MYB46(3)<-----------TGA1              --------->LBD16  ---- -------HSFB2a(2) --------->At4g35610 --------->ANAC58<------NtERF2            --------->LBD16  <---- ------>HSFB2a(2) --------->ZAT14--------->ANAC46 <-----------HVH21           <---------LBD16<------- -------HSFC1(1)  <---------ZAT18--------->ANAC58--------->ANAC46 --------->MYB52(1)<---------SPL7<-- ------>HSFC1(1)  <---------ZAT14<---------ETT(1)--------->bZIP60(2)         ------>ZmHOX2a(2)  <----   ctagaccacaacgagacctctgcacccgatctgacccgacacgctctctctacgtcagcgagtcttgctaacgagttgatcccggtggttcggttctcgg  6908000                                                                                         ------->MYC3                                                                                         <-------MYC3                                                                                         <-------MYC4                                                                                        =============                                                                                        =============           <---------LBD16                                                              <---------ANAC55(2)           ------>ZmHOX2a(2)                                                            --------->TGA1a          <------ZmHOX2a(2)                                                             <---------O2         --------->ARR14(2)                                                             --------->O2         <---------ARR14(2)                                                   ====================bZIP_bZIP   <---------ETT(1)                                                           --------->TGA1a   ----------->HVH21                                                          <---------TGA1a ------>HSFB2a(1)                                                             <---------O2 ------>HSFC1(2)                                                          --------->ANAC58          < -------HSFB2a(1)                                                        ===============MYC_MYB     - ------ARR11(3)                                                          =========================MYC_MYB ----->ARR14(2)                                                          -------->P     <--------ABF1 ------ARR14(2)                                                        <---------MYB111(1)        <-- ------ARR11(1)                                                        <---------MYB52(2)------->MYC4 --------ARR10                                                        <------NtERF2<---------ZAT18<-- --HSFB2a(2)<---------HSFB2a(2)                                       --------->ZAT2    <---------TGA1a ->HSFB2a(2)--------->HSFB2a(2) --------->MYB52(2)                    <---------At4g35610------->MYC2 --------TaMYB80         <<<<<<<<<SPL7                                <---------ZAT2    --------->ANAC55(2) ---->ZmHOX2a(2)         <<<<<<<<<SPL4    --------->ARR11(3)          --------->At4g35610<-------MYC2 ----->ARR11(3)         <---------SPL7    <---------GLK1(2)      --------->MYB59--------->ALFIN1 <--- -----ARR14(1)        <---------------AtSPL8                     --------->MYB46(2)--------->ZAT18--- --LBD16xxxxxxxxxxxxxxxx>smallRNA(s)      <---------ARR14(2)<---------TOE2(3) ======================= ----ZmHOX2a(2)       <---------------AtSPL3                <---------TOE1(3) --------->O2       ---- -----CCA1(2)--------->LBD16  <---------MYB52(1)            --------->DAG2--------->ANAC58     ------   atcttccgaccgatccggaagattgttgtacggtttgtttgtcagattttgagtccgacgataaggttaggcagctacccaagtgtggacacgtgtttca  6908100                                                                --------->ARR14(2)                                                                <---------ARR14(2)                                                                <-----------ARR10                                                            <------NtERF2                                                           ------>NtERF2 --------->ATHB12                                         <---------ALFIN1 --------->ATHB51       --------->WRKY45                 <---------ABI4(2)            --------->ANAC55(1) <---------ICU4         --------->WRKY38(1)              --------->ATERF1(1)          --------->ANAC46 =====================MYC_MYB                            <------NtERF2                --------->ANAC58 =====================MYC_MYB                           <---------RAP2.3(1)           --------->ANAC55(2) ---------YAB1          --------->WRKY12                <---------DEAR3(2)            --------->ANAC58 -------->ICU4         --------->DOF5.7(2)              <---------ATERF1(1)        --------->ZAT18 -------ICU4          <-------GAMYB                    <---------RAP2.3(3)         <---------ZAT18 ------HAHB4         <---------MYB46(3)                <---------ATERF1(2)         <-------TEIL ------YAB1          ------>ZmHOX2a(2)                 <---------DEAR3(1)      --------->DAG2   <---- ------>YAB1     <---------MYB46(3)                    --------->ETT(1)        <---------------AtSPL8 =====================MYC_MYB                         --------->RAP2.6(3)     ---------->DOF2 ------- ----->ICU4    <---------MYB52(1)             <---------LBD16  <---------MYB52(1)  --------->ZAT14 --->YAB1     <-------GAMYB   --------->REM1(1)  <---------MYB52(1)      ---------->DOF2     <-------   tcattattgtttagaccgttggatcgttgactacaacaagatgaaatgtccggtttgtcggcaccggttcttaccgaaagaaaagtacacgcaatctgat  6908200  Previous    Next  AGI:  At4g11370.1    Description:  RHA1A (RING-H2 finger A1A); protein binding / zinc ion binding. Identical to RING-H2 zinc finger protein RHA1a (RHA1A) [Arabidopsis Thaliana] (GB:Q9SUS4;GB:Q9ZT52); similar to RHA1B (RING-H2 finger A1B), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G11360.1); similar to At1g63840-like protein [Arabidopsis lyrata] (GB:AAZ73388.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 6907669    to: 6908381    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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