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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
DOF5.7(2)
<---------
WRKY38(1)
<---------
WRKY12
--------->
DOF5.7(2)
<-----------
HVH21
<----------
ID1
--------->
ARR14(2)
--------->
MYB52(1)
--------->
HSFB2a(2)
--------->
ANAC58
<---------
TOE2(3)
<---------
HSFB2a(2)
--------->
ANAC46
---------->
DOF2
<----------
ID1
---------->
DOF2
-----
-------->
YAB1
<------
ZmHOX2a(2)
---------->
DOF2
<---------
ARR14(2)
--------->
ANAC58
aatcaaaactttgttccactatcaacagatcgaattaaagtaacgacaaaagaacaagacccagaaccccaaaagcgtcaacgaagcaatacatctaata
6853500
------->
GAMYB
<---------
TOE2(3)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
YAB1
------>
ZmHOX2a(2)
<---------
YAB1
<---------
DEAR3(1)
<---------
TOE1(3)
<------
ZmHOX2a(2)
<---------
TOE2(3)
<------
ZmHOX2a(1)
--------->
ARR14(2)
--------->
DOF5.7(2)
--------->
ANAC58
--------->
ZAT14
<---------
ANAC58
<----------
DOF2
--------->
MYB52(1)
<---------
YAB1
<---------
ANAC58
<---------
ATHB12
<-----------
GT1
----------->
GT1
<---------
ZAT14
<-----------
RAV1(1)
----->
DOF2
<---------
DOF5.7(2)
--------->
ANAC58
<-----------
GT1
<---------
TOE2(3)
<---------
ARR14(2)
aagtttcaatctttaacgatgatattaacggtaaggaagagagttatatttatac
cagtgaagttatcgattttgatgttggcctgagcacgatcggcga
6853600
<---------
ARR14(2)
--------->
ARR14(2)
<------
NtERF2
------>
NtERF2
--------->
RAP2.3(2)
<------
NtERF2
--------->
RRTF1(1)
--------->
RAP2.3(1)
--------->
ATERF1(1)
<---------
DEAR4(2)
<---------
ORA47(2)
<---------
ERF1
------>
ZmHOX2a(2)
<---------
RAP2.3(1)
<---------
RRTF1(1)
<---------
ATERF1(1)
------>
NtERF2
<------
ZmHOX2a(2)
<---------
RAP2.6(1)
<---------
RAP2.3(2)
<---------
DREB2C(2)
<---------
RRTF1(2)
<---------
RRTF1(3)
<---------
ANAC46
<---------
RAP2.3(3)
<----------
DOF2
<----------
DOF2
<---------
RAP2.6(2)
<---------
ANAC58
----------->
RAV1(1)
---------->
DOF2
--------->
ALFIN1
<---------
ANAC58
------->
GAMYB
--------->
HSFC1(1)
<----------
DOF2
<---------
DEAR3(1)
<---------
WRKY12
--------->
At4g35610
<---------
HSFB2a(2)
--------->
ATERF1(1)
--------->
ANAC46
<---------
WRKY38(1)
--------->
HSFB2a(2)
<-----
agaaggcggcgcaattgggatccaagtcaatggctttggagtataagtcaacagcaacatcgaagtcatcatctagaaaagcttctttagctttctctgc
6853700
--------->
ARR14(2)
<---------
ATHB12
<---------
ARR14(2)
<xxxxxxxxxxxxxxx
smallRNA(le3)
<-----------
HVH21
<---------
ANAC58
<------
ZmHOX2a(1)
--------->
ANAC58
--------->
GLK1(2)
<---------
ANAC58
<---------
YAB1
--------->
ANAC58
---------->
DOF2
------>
ZmHOX2a(1)
----
At4g35610
<---------
GLK1(2)
--------->
ANAC46
<---------
YAB1
<---------
GLK1(2)
taattccttggccat
tgattcttatcagaggatttgagagaacacaaacaagtcagagagagagagagattatagagaaagagaccgattctattcctct
6853800
<--
---
--------->
DAG2
--------->
DAG2
<----------
DOF2
*
TSS
<-----------
HVH21
---------->
DOF2
<----------
DOF2
<---------
AHL20(2)
--------->
AHL20(2)
<-----------
GT1
----------->
GT1
aggctttttttttttttgctgtgtttgggattttttttttcttttaagaacgtttt
aatacctctactaggtcatataaccaaaaacaaaaaggtaatta
6853900
--------->
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
<---------
AHL20(2)
<-----------
GT1
<------------
CBF
--------->
AHL20(2)
--------->
AHL20(2)
--------->
TOE2(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
TOE1(2)
<-----------
GT1
<---------
AHL20(1)
--------->
AHL20(2)
<---------
GLK1(2)
<---------
RVE1(1)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
WOX13(1)
<---------
ARR11(3)
--------->
AHL20(2)
<---------
YAB1
--------->
YAB1
<---------
ARR14(2)
-------
ARR11(3)
<----------
DOF2
>>>>>>>>>
MYB98
<---------
GLK1(2)
--
------>
ARR11(3)
<-----------
GT1
<-----------
GT1
--------->
ARR14(2)
------
gattttattttattttctaatttccttttgattttattttttaacataagattgattcttgataagtccagattttttaacaaataaattagttgacaaa
6854000
<---------
ICU4
<--------
HAHB4
<---------
YAB1
--------->
YAB1
--------->
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
CCA1(1)
--------->
AHL20(2)
<---------
RVE1(1)
<---------
AHL20(2)
--------->
AHL20(1)
<---------
ICU4
<---------
ARR11(3)
--------->
ATHB51
<---------------
AGL15
<---------
AHL20(1)
--------->
AHL20(2)
--------------->
AGL15
--------->
ARR11(3)
<--------
ATHB1
----------->
GT1
----------->
GT1
<---------
ATHB51
--------->
YAB1
--------->
YAB1
<---------
ATHB12
------->
YAB1
---------->
DOF2
---------->
DOF2
--------->
ICU4
--------->
YAB1
-----
---->
DOF2
---------->
DOF2
--------->
MYB52(1)
--------->
YAB1
--------->
ICU4
----------------
agaataatactgaaaaaaggaaagaaaactaatggtaaagatatttatagagaactacaataatttaaaataatcattttctactcattttgtttatatc
6854100
<-----------
GT1
--------->
AHL20(1)
<---------
AHL20(2)
<---------
AHL20(1)
<---------
ARR11(3)
--------->
ARR11(3)
--------->
AHL20(1)
--------->
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(2)
<
--------->
DOF5.7(2)
<---------
AHL20(1)
<---------
AHL20(2)
---
---->
YAB1
--------->
YAB1
--------->
YAB1
<---------
YAB1
<-----
----->
WRI1
----------->
GT1
<---------
YAB1
----------->
GT1
--------
gtaatcgtttactcatagtttagcaaatacaatgtgatttgtgaatttagactatgatatattttaacaagttataatttatatattgactagattagga
6854200
<
-
-
-----
<---------
YAB1
<----
<---------
ATHB12
<----
--------->
YAB1
--------->
WOX13(1)
--------->
TOE2(3)
-----------
HVH21
<---------
YAB1
--------->
AHL20(2)
--------->
TOE1(3)
------>
MYB46(3)
----------->
GT1
----------->
GT1
--------->
YAB1
<-----------
GT1
-
ZmHOX2a(1)
<---------
AHL20(2)
---------->
DOF2
--------->
ICU4
<---------
ICU4
<
->
MYB59
--------->
ANAC55(2)
--------->
GLK1(2)
------------>
CBF
--------->
AHL20(2)
cccgtcgtccaatacacagatttaagtattttaagttgataataatctagtaaagttaaaatatcaattatcaaacttttgccaaatatttaccttaaaa
6854300
--------->
ICU4
<---------
YAB1
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
---------->
ID1
--------->
TOE2(3)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
--------->
AHL20(1)
---------
AHL20(1)
--------->
ARR11(3)
--------->
DOF5.7(2)
-------->
AHL20(1)
<---------
ARR11(3)
--------->
O2
-------->
AHL20(2)
--------->
CCA1(2)
<---------
O2
---->
AHL20(2)
--------->
ARR11(3)
<---------
bZIP60(1)
-----
AHL20(1)
<---------
ARR11(3)
*
TSS
--------->
bZIP60(1)
-----
AHL20(2)
<---------------
AtSPL8
<---------
ZAT6
--------->
WRKY12
<-
---------
AHL20(2)
<---------------
AtSPL3
<---------
YAB1
<---------
ANAC46
---
aatttatttgcaacctcgaaaaatccatctaaatatgtacagatatatttgtcgtgatt
actgttacgacgtcgtttaccagttcgttcttccttcttct
6854400
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AGI:
At4g11260.1
Description:
SGT1B (enhanced downy mildew 1b); protein binding. similar to SGT1A (Suppressor of G2 (Two) 1A) [Arabidopsis thaliana] (TAIR:AT4G23570.2); similar to SGT1A (Suppressor of G2 (Two) 1A), protein binding [Arabidopsis thaliana] (TAIR:AT4G23570.1); similar to SGT1-like protein [Brassica oleracea] (GB:CAF06580.1); contains InterPro domain SGS (InterPro:IPR007699); contains InterPro domain HSP20-like chaperone (InterPro:IPR008978); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain CS (InterPro:IPR007052); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); contains InterPro dom
Range:
from: 6851273
to: 6853856
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g11270.1
Description:
transducin family protein / WD-40 repeat family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO65901.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680)
Range:
from: 6854360
to: 6859660
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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