Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        --------->YAB1                   --------->WOX13(1)                <-----------HVH21               <---------TGA1a                                        <-----------GT1               <---------O2                              <---------At5g28300               --------->TGA1a                          <---------DOF5.7(2)               --------->bZIP60(2)                      <-----------GT1                            --               --------->ANAC46                         --------->MYB52(1)                       <---               --------->ANAC58                       <---------MYB52(2)--------->ZAT6           <---       <---------ICU4<---------ATHB12           --------->ZAT6     <---------ICU4          <------MYB83 ------->TEIL  --------->O2                    <---------YAB1<---------MYB52(1)            <------MYB46(1) ---->RAV1(1)  --------->ANAC58          ------>ZmHOX2a(1)  --------->At5g28300        <-----------RAV1(1)   atgaactcaaaattgccacgtcaatcatatatacagtagcatcctagttatcagtaattaacggttaactaattacactactaaaatcaatgttggtatt  6817700       --------->AHL20(1) ------->ANAC55(2)    <-----------GT1                           <------ZmHOX2a(1) ------AHL20(2)       <---------AHL20(2)                     <---------HSFB2a(2)                ----- --------GT1       <---------ICU4       <---------YAB1       --------->HSFB2a(2)                <----   tacataacatatattagttcatatttacattttgaatttgttatgagtttggattaatacattctaggattcaaagtttagactaaaaaaacccatataa  6817800                                                                                                    -                                                                                                  ---                                                                                                 <---                                                                                       <---------LBD16                       <------ZmHOX2a(1)                               <---------MYB52(1)       ----- ---->AHL20(2)      --------->HSFB2a(2)                          --------->ICU4  ----------------->AGL1 -----AHL20(2)      <---------HSFB2a(2)                        --------->YAB1  <-----------GT1 ------   aaatagtttggattaatacattctaggattcaaagttttagactaaaaaacccatctcatttcagtcataactgtttgttttttcgatattcggaatcaa  6817900                                                                                  <---------ANAC58                              --------->ANAC55(2)                                 <------MYB83 ------                              <---------ANAC55(1)                                 --------->ANAC55(2)               --------->MYB52(1)                                                 <---------ANAC55(2) -------->AtLEC2              <---------ANAC55(2)                                 <---------ANAC58 ------>YAB1 <---------MYB52(2)                     --------->ARR11(3)            <---------ANAC55(1) ------ATHB12<---------MYB111(1)                    <---------ARR11(3)            <------MYB46(1)  <- --->P  ----------->GT1     <-----------GT1      <------NtERF2                   --------->MYB59<---- --->WOX13(1)<---------MYB46(2)       --------->ANAC46------>ZmHOX2a(2)          --------->MYB111(1)   ccatgaaaattagtaactaacaagtgaatgttacatgtttaagtcactggcatcgatcttaaaaataggtttagagatgaaattaggtgtcattctctca  6818000                                         <---------ATHB12                                   <--------                <---------ZAT14        --------->GLK1(1)                              --------->ALFIN1                --------->ZAT14        <---------GLK1(1)                              <---------AtMYB61          --------->MYB52(1)         <------ZmHOX2a(1)                             *TSS   <---------MYB46(3)       ----------->TBP      ------>ZmHOX2a(1)  --------->LBD16                    <---------ZAT2    <---------YAB1          ========================================================================= --->ATHB12     --------->SPL7      --------->ANAC58                <---------------------WRI1 --------MYB46(3)<---------ALFIN1   --------->ANAC58               <----------ID1 --------->ZAT2 --------CBF    <-------TEIL<---------------AGL15   <---------AHL20(2)         ---------->DOF2  <----   ttggttcttataaaacggtacaccgtgttcctaaacacaggaaatcatcccgattttattccaaagtttgggccaaaggctcaaagctgtggtcgtttct  6818100                                                                                   ------>ZmHOX2a(1)                                                                              <---------ANAC58   --------->ANAC58                                                       <---------DAG2   --------->ANAC58                     ----------->GT1                   <----------DOF2           < ---------->DOF2                       >>>>>>>>>TBF1               --------->At4g35610           <--- -MYB52(1)                          >>>>>>>>>TBF1           --------->REM1(1) <---------ANAC58   ---- ===========MADS_MADS          ------------------------>ANAC81     <---------At4g35610           <--- -----------AGL15            --------->CCA1(2)     --------->AHL20(2)  <---------ALFIN1     <<<<<<<<<TBF1   tcacaaagcaagtttttagggatttttgaagataagaagaagaagaaaaacaaaaaaatgcttcaactctgctccactttccgtcctcaacttcttcttc  6818200                                   <---------MYB52(1)                                  --------->LBD16                                 <---------ANAC55(2)                                 <---------ANAC58                                           <--------                                 <---------ANAC58             <---------MYB52(1)          <---------ANAC58                                 <---------ANAC46            <-------GAMYB                <---------ANAC58                                 --------->ANAC55(2)  <---------ALFIN1               --------->HSFC1(2) -----------HVH21     <---------ANAC58             --------->ANAC46           <---------ARR14(2)  --- ------ANAC58         <---------ANAC46             --------->ANAC58           --------->ARR14(2)<---- ----------------->WRI1    <---------YAB1          --------->ANAC58 --------->TOE2(3)--------->HSFB2a(1) ------ANAC58         <---------ANAC58           <-----------GT1  <-----------GT1  <---------GLK1(2)   cttgtcaattccgatttacaaatggcgttttgattccgtaagttctcaatttcacaccacttccgttataacttaattcgaattcgattcttccgttttc  6818300                                                   <---------MYB52(1)                                              --------->ARR14(2)                                              <---------ARR14(2)                                           --------------->AGL15                                           <---------------AGL15                                  <--                                          <-----------------AGL1                                  ---                                          ===========================================================                                          ----------------->AGL1                               <-----                                          <-----------------AGL2                              <------                                          ----------------->AGL2        <---------YAB1        <------                                          ===========================================================                                          ----------------->AG       <---------AHL20(2)       -------                                          <-----------------AG      <---------AHL20(2)        -------        <----------DOF2              <---------ANAC58               --------->AHL20(2)        -------  <----------DOF2                    --------->MYB52(2)          --------->ATHB51         --------->GLK1(1) -MYB52(1)                           <---------ANAC46         --------->TOE2(3)<------MYB83   ------- ------>ANAC46                       <---------ANAC58     <---------CCA1(2)------->TEIL   <---------GLK1(1) -------GT1                         <-------TEIL --------->MYB59 <---------ICU4<------MYB46(1)<------   acgactttctctttgggtttcgatagcaatttcatgggttcgtgtccaaattcggtatttgtatccataattttatgaatttggtgtttcagaattccca  6818400       <---------MYB46(3)       <------MYB83       <------MYB46(1)     <---------WOX13(1)    <---------ARR14(2)    --------->ARR14(2) -------ARR14(2) ------>ARR14(2) ===========MADS_MADS                                                                          ------ ----------AGL15                                                                            <-------- -----------AGL2                                                                          <---------ARR14(2) -----------AGL3                                                                   ----------->GT1 ===========MADS_MADS                 ---------->ID1                             <---------At4g35610< ---------->AGL2         <---------ANAC58                               --------->ANAC46  --------->ARR14(2) ---------->AGL1         <---------ANAC58         --------->MYB46(3)    --------->ANAC58  --------->ARR11(3) ---------->AGL3        <---------At4g35610<----------DOF2              --------->ANAC58 <---------GLK1(1) ---------->AG     <----------DOF2  <-----------RAV1(1)    --------->AHL20(2)    <-------GAMYB------- -----------AG  --------->GLK1(2)<---------MYB52(1)------->GAMYB <-----------RAV1(1)    ---------->TaMYB80   aattcggattggttagagtttcttttagcttatctgttttgttgtctttgtaacagccaaataaactatgttgcaagcaattcagttgtgaatatccggc  6818500   --------->CCA1(2)  --------->ARR11(1)                                               --------->ANAC58 --------->YAB1                     <------ZmHOX2a(1)              --------->ANAC58----------->RAV1(1) >NtERF2                          --------->ALFIN1              --------->LBD16 --------->ANAC58 -LBD16                          <------ZmHOX2a(1)    --------->TOE1(2)---------->DOF2              < ---------ATHB12    --------->MYB52(1)         --------->ANAC58--------->ANAC46 --------->ANAC58    < -->LBD16------>NtERF2     <------ZmHOX2a(1)   --------->ANAC58--------->RAP2.6(2)<----------ID1    <   caatgatacgatgccagagagcaagcggaggaagaggaggagctaatagaagcaaacctgctaagccgcaagttaaagaaggaagcaacaaaacagtaat  6818600  Previous    Next  AGI:  At4g11175.1    Description:  translation initiation factor IF-1, chloroplast, putative. Identical to Translation initiation factor IF-1, chloroplast precursor [Arabidopsis Thaliana] (GB:O82499;GB:Q56YK9;GB:Q8GY59;GB:Q9T016); similar to Translation initiation factor IF-1, chloroplast precursor (GB:Q94KR7); contains InterPro domain S1, IF1 type; (InterPro:IPR006196); contains InterPro domain S1, RNA binding; (InterPro:IPR003029); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Translation initiation factor IF-1; (InterPro:IPR004368); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 6818083    to: 6819038    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version