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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----------
ID1
<-----------
HVH21
<------
ZmHOX2a(1)
<---------
GLK1(2)
<---------
LBD16
--------->
ICU4
--------->
LBD16
----->
AtLEC2
<------
NtERF2
--------->
ARR14(2)
--------->
At4g35610
----
ANAC58
<---------
RAP2.6(3)
------>
ZmHOX2a(1)
--------->
ARR14(2)
----
----
ANAC58
<-----------
HVH21
<---------
ATHB12
<---------
TOE1(1)
<---------
ARR14(2)
-----
-
AtSPL8
--------->
RAP2.6(2)
<---------
At4g35610
------->
GAMYB
------
>
AtSPL8
>>>>>>>
GRF7
<---------
ALFIN1
<---------
ARR14(2)
--------->
MYB52(1)
--------->
REM1(1)
tgcaaagattgtcaggccgtcaagagtagcaccactcatctcctcccaatccgaggagacaagtttatacagcaacggtatctcgctgctacatgtaaac
6588700
---------->
DOF2
----->
TOE1(2)
---->
YAB1
------>
ZmHOX2a(1)
--->
ICU4
<----------
DOF2
------>
ZmHOX2a(1)
----------->
RAV1(1)
----
atgagaaagagctctcctttctatcaaacaacaagagactccttctcctacagagacttcaatccatcgcaacaacattgtttctgtttcagtttcagtt
6588800
-
<---
<------
ZmHOX2a(1)
--
--------->
At4g35610
<--
------>
ZmHOX2a(1)
---------->
DOF2
-------
---------->
DOF2
--------->
YAB1
---------
<-------
TEIL
---------->
DOF2
--------->
TOE2(3)
<---------
ATHB12
--------->
ANAC55(2)
--------->
GLK1(2)
--------->
ANAC58
<<<<<<<<<
ARR2
--------->
ANAC58
--------->
CCA1(2)
--------->
ANAC46
--------->
WOX13(1)
--------->
ANAC46
<---------
ARR14(2)
--------->
ANAC58
--------->
MYB46(3)
<---------
ANAC55(2)
------>
DOF2
---------->
DOF2
--------->
ZAT18
<----------
DOF2
----------->
RAV1(1)
--------->
ANAC58
aaaggagattcaggcccaaaagaaaaagagaagcccacgaagcccatcctttactcatcgaaactctgcaacaatcaaagcagaggaacatcacgcgaga
6588900
<---------
ETT(2)
--------->
ETT(2)
<------
NtERF2
------>
NtERF2
<---------
ATERF1(1)
--------->
RAP2.3(2)
--------->
RAP2.3(3)
--------->
DEAR3(1)
--------->
ERF1
--------->
YAB1
--------->
RAP2.3(1)
<--------
HAHB4
--------->
ANAC58
--------->
RRTF1(1)
<---------
ICU4
--------->
ANAC46
------>
NtERF2
<-------
TEIL
--------->
ANAC58
--------->
ABI4(1)
--------->
ZAT18
--------->
AtLEC2
<-----------
HVH21
-------->
DEAR3(1)
<---------
ZAT18
----------->
RAV1(1)
--------->
O2
------
ALFIN1
------->
MYC3
--------->
ZAT2
--------->
At4g35610
------->
DEAR3(2)
<-------
MYC3
--------->
At4g35610
<---------
At4g35610
-------
ATERF1(1)
<-------
MYC2
<---------
At4g35610
----------->
RAV1(2)
-
---->
HVH21
------->
MYC2
--------->
At4g35610
<---------
O2
---------
>
ANAC46
--------->
YAB1
<---------
ATHB12
<---------
At4g35610
<------
ZmHOX2a(1)
<--------
caccgccgtcgacaaacataaacgtgcacaatcattttgatgttcttggaagcagcagcatttcatgcaactaggacacctgtcattagctattatgtaa
6589000
<---------
AHL20(2)
<--------
HAHB4
--------->
AHL20(2)
<---------
ICU4
--------->
ATHB51
--------->
AHL20(2)
-------->
ATHB1
<----------
DOF2
--------->
ICU4
--------------->
AGL15
<---------
ATHB51
------>
ZmHOX2a(1)
<---------
ANAC58
------------>
CBF
<----------
DOF2
----->
ZmHOX2a(1)
<---------
ANAC58
<------
ZmHOX2a(1)
<-----------
GT1
<---------
ANAC58
>
ANAC55(2)
<---------
ANAC46
<---------
TOE2(3)
--------->
YAB1
<---------
ANAC58
-
ANAC55(2)
<---------
ZAT14
--------->
ARR14(2)
--------->
ANAC46
<----------
DOF2
--------->
YAB1
tcctcctctttatatagttctctgcttgtaatcgaattcactaaggaagaaatacacaattattttctctctgaagcttttgcttctactttcatggtat
6589100
<
<-
<-
--
---
--------->
ANAC58
<--
--------->
ANAC46
<--
--------->
ANAC58
<--
------>
ZmHOX2a(1)
<---------
ARR11(3)
---
---------->
ID1
------>
ZmHOX2a(1)
<-----------
GT1
<--
<----------
DOF2
*
TSS
--------->
GLK1(2)
--------->
ARR11(3)
---
<------
ZmHOX2a(1)
--------->
AtLEC2
<-----------
GT1
----------->
GT1
----------->
RAV1(1)
cagagcttaggactttgttcctaagcc
atggaagaatctatttttgtttcctctcttaacatctctcaagttgttactctcaaactcactcccacaaact
6589200
--------->
ATERF1(1)
<---------
RAP2.3(1)
------>
NtERF2
<---------
ATERF1(1)
<---------
TCP20
--------->
ANAC46
--------->
RRTF1(2)
--------->
RAP2.3(3)
--------->
RAP2.3(2)
--------->
DEAR3(1)
<---------
TCP16(1)
--------->
PCF2
--------->
ERF1
--------->
RAP2.3(1)
--------->
RRTF1(1)
--------->
ATERF1(1)
<---------
ATERF1(1)
<---------
RAP2.3(1)
<---------
ATERF1(2)
<---------
LBD16
--------->
ATERF1(2)
<-----
<---------
ANAC46
<---------
LBD16
--------->
ATHB12
----------
DOF2
--------->
DEAR3(2)
-------->
ATHB1
--------------
AGL15
<---------
At5g28300
<---------
ICU4
--------
DAG2
--------->
MYB52(1)
--------->
YAB1
------------->
AGL15
--------->
ARR14(2)
--------->
AtMYB61
-------------->
AGL2
<---------
ARR14(2)
------>
NtERF2
<---------
YAB1
---------------
AGL2
<------
ZmHOX2a(1)
<---------
ALFIN1
--------->
MYB46(3)
---------------
AGL3
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
------------>
ATHB5
---------------
AGL1
--------->
HSFB2a(2)
<---------
ALFIN1
------>
NtERF2
-------------->
AGL1
<---------
At4g35610
<-----------
GT1
------>
ZmHOX2a(1)
--------->
ICU4
---------------
AG
<----------
DOF2
--------->
HSFC1(1)
<------
NtERF2
<---------
ATERF1(1)
-
-------------->
AG
<-----------
GT1
<---------
HSFB2a(2)
--------->
DEAR3(1)
<---------
ALFIN1
accttttgtggaaaacccaatttgagtcttacctttcatctcatcttcttctaggatttgttaccggcgccactcctcggcctgcctccaccatcattgt
6589300
---------->
DOF2
<---------
WRKY38(1)
<---------
WRKY12
<---------
WRKY45
--------->
WRKY18(1)
<--
<<<<<<<<<<
WRKY18
------>
ZmHOX2a(2)
<---------
ARR11(3)
<<<<<<<<<<
WRKY62
--------->
GLK1(1)
--------->
ARR11(3)
<<<<<<<<<<
WRKY40
<---------
GLK1(1)
<------
ZmHOX2a(1)
<---------
GLK1(2)
<------
MYB83
--------->
ARR11(3)
<---------
TOE2(3)
<---------
ATHB12
<------
MYB46(1)
<---------
ARR11(3)
------
HVH21
--------->
ANAC58
<---------
MYB52(1)
<---------
AGP1
--------->
DOF2
--------->
ANAC58
<------
ZmHOX2a(2)
<---------
CCA1(2)
cacaaaggatgatattcagtctgaagaagcaaatcaagaatttctgaaatggactcgaatcgatcagttggtcaaagcttggatttttggatctctctct
6589400
<------
MYB46(1)
============
<---------
ANAC46
<------
MYB83
--------->
ZAT6
---
<---------
ANAC58
<---------
ANAC46
<---------
ALFIN1
--
--------->
ATHB12
<---------
ANAC58
--------->
AtMYB61
<---------
YAB1
<---------
ANAC58
--------->
MYB46(3)
---------->
DOF2
--------->
At4g35610
--------->
ANAC46
<---
--------->
At4g35610
<---------
ANAC58
--------->
ALFIN1
<-----------
GT1
----
-------------------
WRI1
<---------
At4g35610
<-----------
GT1
<------
ZmHOX2a(1)
gaagaagctctcaaagttgttattggcttaaactctgctcaagaggtatggcttggtttagcaagacgttttaatcgtttttccaccactaggaaatatg
6589500
--------->
ARR14(2)
<---------
ARR14(2)
--------->
At4g35610
=====
HOX2a_HOX2a
------>
At4g35610
<---------
TOE2(3)
<--
---->
ZmHOX2a(2)
<---------
ANAC58
<---------
ZAT2
<--
------
ARR11(3)
----------->
GT1
<---------
ANAC58
--------->
ZAT2
<---
----->
ARR11(3)
---------->
DOF2
<---------
MYB46(3)
----------->
GT1
----------->
HVH21
<---
atctgcagaaacgactaggcacttgttcaaaagctggaaaaacgatggatgcttatctaagtgaggttaaaaacatatgtgaccagcttgattcaattgg
6589600
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AGI:
At4g10690.1
Description:
transposable element gene. copia-like retrotransposon family, has a 1.5e-256 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)
Range:
from: 6589128
to: 6593684
Orientation: Forward
Links:
TAIR
MIPS
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publications
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