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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                    <----------ID1
      <-----------HVH21                            <------ZmHOX2a(1)
   <---------GLK1(2)                            <---------LBD16
 --------->ICU4                                 --------->LBD16
----->AtLEC2   <------NtERF2                --------->ARR14(2)                     --------->At4g35610
----ANAC58    <---------RAP2.6(3)      ------>ZmHOX2a(1)                   --------->ARR14(2)   ----
----ANAC58    <-----------HVH21<---------ATHB12<---------TOE1(1)           <---------ARR14(2)  -----
-AtSPL8      --------->RAP2.6(2)  <---------At4g35610                   ------->GAMYB         ------
>AtSPL8  >>>>>>>GRF7        <---------ALFIN1<---------ARR14(2)       --------->MYB52(1)--------->REM1(1)
 
tgcaaagattgtcaggccgtcaagagtagcaccactcatctcctcccaatccgaggagacaagtttatacagcaacggtatctcgctgctacatgtaaac  6588700
 ---------->DOF2
----->TOE1(2)
---->YAB1                                   ------>ZmHOX2a(1)
--->ICU4     <----------DOF2          ------>ZmHOX2a(1)              ----------->RAV1(1)        ----
 
atgagaaagagctctcctttctatcaaacaacaagagactccttctcctacagagacttcaatccatcgcaacaacattgtttctgtttcagtttcagtt  6588800
                                                                                                   -
                                                                                                <---
                                                                                 <------ZmHOX2a(1)--
                                                                              --------->At4g35610<--
                                             ------>ZmHOX2a(1)          ---------->DOF2      -------
                                  ---------->DOF2                      --------->YAB1      ---------
     <-------TEIL   ---------->DOF2         --------->TOE2(3)         <---------ATHB12   --------->ANAC55(2)
    --------->GLK1(2)            --------->ANAC58                     <<<<<<<<<ARR2      --------->ANAC58
    --------->CCA1(2)            --------->ANAC46                   --------->WOX13(1)   --------->ANAC46
   <---------ARR14(2)            --------->ANAC58                  --------->MYB46(3)    <---------ANAC55(2)
------>DOF2   ---------->DOF2 --------->ZAT18<----------DOF2     ----------->RAV1(1)     --------->ANAC58
 
aaaggagattcaggcccaaaagaaaaagagaagcccacgaagcccatcctttactcatcgaaactctgcaacaatcaaagcagaggaacatcacgcgaga  6588900
     <---------ETT(2)
     --------->ETT(2)
    <------NtERF2
   ------>NtERF2
   <---------ATERF1(1)
  --------->RAP2.3(2)
  --------->RAP2.3(3)
  --------->DEAR3(1)
 --------->ERF1             --------->YAB1
 --------->RAP2.3(1)        <--------HAHB4                   --------->ANAC58
 --------->RRTF1(1)         <---------ICU4                   --------->ANAC46
------>NtERF2        <-------TEIL                            --------->ANAC58
--------->ABI4(1)    --------->ZAT18                         --------->AtLEC2<-----------HVH21
-------->DEAR3(1)    <---------ZAT18                ----------->RAV1(1)   --------->O2
------ALFIN1       ------->MYC3                   --------->ZAT2          --------->At4g35610
------->DEAR3(2)   <-------MYC3                   --------->At4g35610     <---------At4g35610
-------ATERF1(1)   <-------MYC2                   <---------At4g35610     ----------->RAV1(2)      -
---->HVH21         ------->MYC2                --------->At4g35610        <---------O2     ---------
>ANAC46     --------->YAB1 <---------ATHB12    <---------At4g35610    <------ZmHOX2a(1)    <--------
 
caccgccgtcgacaaacataaacgtgcacaatcattttgatgttcttggaagcagcagcatttcatgcaactaggacacctgtcattagctattatgtaa  6589000
                                                        <---------AHL20(2)
                                                        <--------HAHB4
                                                        --------->AHL20(2)
                                                        <---------ICU4
                                                        --------->ATHB51
      --------->AHL20(2)                                -------->ATHB1
    <----------DOF2                                    --------->ICU4
    --------------->AGL15                              <---------ATHB51
  ------>ZmHOX2a(1) <---------ANAC58               ------------>CBF                  <----------DOF2
----->ZmHOX2a(1)    <---------ANAC58     <------ZmHOX2a(1)  <-----------GT1   <---------ANAC58
>ANAC55(2)          <---------ANAC46   <---------TOE2(3)--------->YAB1        <---------ANAC58
-ANAC55(2)    <---------ZAT14  --------->ARR14(2) --------->ANAC46       <----------DOF2--------->YAB1
 
tcctcctctttatatagttctctgcttgtaatcgaattcactaaggaagaaatacacaattattttctctctgaagcttttgcttctactttcatggtat  6589100
                                                                                                   <
                                                                                                  <-
                                                                                                  <-
                                                                                                  --
                                                                                                 ---
                   --------->ANAC58                                                              <--
                   --------->ANAC46                                                              <--
                   --------->ANAC58                                                              <--
                 ------>ZmHOX2a(1)                      <---------ARR11(3)                       ---
             ---------->ID1                    ------>ZmHOX2a(1)      <-----------GT1            <--
         <----------DOF2   *TSS--------->GLK1(2)        --------->ARR11(3)                       ---
      <------ZmHOX2a(1) --------->AtLEC2   <-----------GT1         ----------->GT1      ----------->RAV1(1)
 
cagagcttaggactttgttcctaagccatggaagaatctatttttgtttcctctcttaacatctctcaagttgttactctcaaactcactcccacaaact  6589200
                                                                 --------->ATERF1(1)
                                                                <---------RAP2.3(1)
                                                                ------>NtERF2
                                                                <---------ATERF1(1)
                                                               <---------TCP20
                                                               --------->ANAC46
                                                               --------->RRTF1(2)
                                                               --------->RAP2.3(3)
                                                               --------->RAP2.3(2)
                                                               --------->DEAR3(1)
                                                               <---------TCP16(1)
                                                               --------->PCF2
                                                              --------->ERF1
                                                              --------->RAP2.3(1)
                                                              --------->RRTF1(1)
                                                              --------->ATERF1(1)
                                                             <---------ATERF1(1)
                                                             <---------RAP2.3(1)
                                                            <---------ATERF1(2)
   <---------LBD16                                          --------->ATERF1(2)               <-----
  <---------ANAC46                                         <---------LBD16                --------->ATHB12
----------DOF2                                             --------->DEAR3(2)             -------->ATHB1
--------------AGL15                                       <---------At5g28300             <---------ICU4
--------DAG2                                              --------->MYB52(1)              --------->YAB1
------------->AGL15                                --------->ARR14(2)                  --------->AtMYB61
-------------->AGL2                                <---------ARR14(2)      ------>NtERF2 <---------YAB1
---------------AGL2                               <------ZmHOX2a(1) <---------ALFIN1  --------->MYB46(3)
---------------AGL3                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ------------>ATHB5
---------------AGL1                            --------->HSFB2a(2)<---------ALFIN1------>NtERF2
-------------->AGL1               <---------At4g35610    <-----------GT1------>ZmHOX2a(1)--------->ICU4
---------------AG            <----------DOF2   --------->HSFC1(1)<------NtERF2 <---------ATERF1(1) -
-------------->AG        <-----------GT1       <---------HSFB2a(2)--------->DEAR3(1)<---------ALFIN1
 
accttttgtggaaaacccaatttgagtcttacctttcatctcatcttcttctaggatttgttaccggcgccactcctcggcctgcctccaccatcattgt  6589300
                                                                     ---------->DOF2
                                                                    <---------WRKY38(1)
                                                                    <---------WRKY12
                                                                    <---------WRKY45
                                                                   --------->WRKY18(1)           <--
                                                                   <<<<<<<<<<WRKY18     ------>ZmHOX2a(2)
       <---------ARR11(3)                                          <<<<<<<<<<WRKY62    --------->GLK1(1)
       --------->ARR11(3)                                          <<<<<<<<<<WRKY40    <---------GLK1(1)
   <------ZmHOX2a(1)              <---------GLK1(2)              <------MYB83         --------->ARR11(3)
 <---------TOE2(3)           <---------ATHB12                    <------MYB46(1)      <---------ARR11(3)
------HVH21            --------->ANAC58                        <---------MYB52(1)     <---------AGP1
--------->DOF2         --------->ANAC58                    <------ZmHOX2a(2)         <---------CCA1(2)
 
cacaaaggatgatattcagtctgaagaagcaaatcaagaatttctgaaatggactcgaatcgatcagttggtcaaagcttggatttttggatctctctct  6589400
                                                  <------MYB46(1)                       ============
                      <---------ANAC46            <------MYB83                    --------->ZAT6 ---
                      <---------ANAC58         <---------ANAC46                   <---------ALFIN1--
                --------->ATHB12               <---------ANAC58                   --------->AtMYB61
               <---------YAB1                  <---------ANAC58                  --------->MYB46(3)
        ---------->DOF2         --------->At4g35610                            --------->ANAC46 <---
  --------->At4g35610 <---------ANAC58    --------->ALFIN1                  <-----------GT1     ----
-------------------WRI1         <---------At4g35610                 <-----------GT1     <------ZmHOX2a(1)
 
gaagaagctctcaaagttgttattggcttaaactctgctcaagaggtatggcttggtttagcaagacgttttaatcgtttttccaccactaggaaatatg  6589500
    --------->ARR14(2)
    <---------ARR14(2)
--------->At4g35610
=====HOX2a_HOX2a
------>At4g35610                                           <---------TOE2(3)                     <--
---->ZmHOX2a(2)                                <---------ANAC58                  <---------ZAT2  <--
------ARR11(3)                 ----------->GT1 <---------ANAC58                  --------->ZAT2 <---
----->ARR11(3)           ---------->DOF2  <---------MYB46(3)----------->GT1----------->HVH21    <---
 
atctgcagaaacgactaggcacttgttcaaaagctggaaaaacgatggatgcttatctaagtgaggttaaaaacatatgtgaccagcttgattcaattgg  6589600
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AGI:  At4g10690.1   
Description:  transposable element gene. copia-like retrotransposon family, has a 1.5e-256 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)
Range:  from: 6589128    to: 6593684    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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