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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
<---------
ARR11(3)
<---------
ARR14(2)
<-----------
GT1
--------->
HSFB2a(2)
--
--------->
ARR14(2)
<---------
YAB1
<---------
HSFC1(1)
<--
------>
ZmHOX2a(1)
--------->
YAB1
<---------
HSFB2a(2)
<---
---------
ANAC58
<---------
YAB1
<----------
DOF2
--------->
ARR11(3)
---------
ANAC58
----------->
GT1
--------->
AtMYB61
--------->
HSFC1(1)
---------
tttcctgccatatacacatgaaacac
ctaaaaaatgataatacactccattagagaccaaaaccaaaaactttctagaaacttagatatcaaactcgtta
6286900
<---------
YAB1
<---------
bZIP60(1)
--------->
bZIP60(1)
<---------
GLK1(1)
<---------
TGA2(1)
<----------
DOF2
------>
NtERF2
<----
--------->
REM1(1)
<---------
DAG2
----------->
HVH21
----
------->
ANAC46
<---------
WOX13(1)
<---------
ANAC58
--------->
DEAR3(1)
-------
TOE2(3)
--------->
ATHB12
<---------
ANAC58
--------->
ARR14(2)
------>
ZmHOX2a(1)
--------
GT1
<---------
ATHB12
--------->
YAB1
<---------
ARR14(2)
--------->
LBD16
-->
GT1
--------->
At4g35610
<----------
DOF2
<-----------
RAV1(2)
--------->
GLK1(1)
aacgttac
atcatcagagccagtgattgatatatcatcttctttatcaaaatagcttttccattctacaggcgaatacttctccgacgaattc
ctgaaac
6287000
<------
ZmHOX2a(1)
----------->
GT1
<------
ZmHOX2a(1)
------>
ZmHOX2a(2)
<----------
ID1
=============
HOX2a_HOX2a
<------
ZmHOX2a(1)
<--------
<------
ZmHOX2a(2)
<---------
ANAC46
<------
NtERF2
==============
HOX2a_HOX2a
<---------
TOE2(3)
<---------
DEAR3(1)
------
ID1
--------->
ARR14(2)
--------->
MYB52(1)
<------
ZmHOX2a(1)
------->
RAV1(1)
<---------
ARR14(2)
<---------
MYB52(2)
<----------
ID1
aacaaaaaccaatttcacgatgaaaacgagatcggaaggagaattgagaattgaaactgaaactaac
gtagaaggaggacgaagaggacgagcggcgaag
6287100
<---------
ZAT2
<---------
At4g35610
--------->
HSFC1(2)
<---------
HSFB2a(1)
--------->
HSFB2a(1)
<---------
HSFC1(2)
<---------
ARR14(2)
<------
NtERF2
--------->
ANAC46
--------->
LBD16
--------->
ARR11(3)
--------->
DEAR3(1)
<---------
ARR14(2)
<------
NtERF2
--------->
ARR14(2)
<---------
LBD16
<---------
ARR11(3)
---------->
DOF2
--------->
ATERF1(1)
<---------
TOE2(3)
<---------
ARR14(2)
------>
NtERF2
------>
ZmHOX2a(1)
--------->
ARR14(2)
------->
TEIL
<----------
DOF2
--------->
ANAC46
----------->
RAV1(2)
<---------
ARR14(2)
--------->
ARR14(2)
-------
-
ANAC46
--------->
ARR14(2)
<---------
At4g35610
<------
ZmHOX2a(1)
--------->
GLK1(2)
<------
acagacgccggagcttctatgggttctaaatgttcctctgaggtatcttcacgaagaggattcaaatttgaagacgaatccat
tgttgaaagctttttag
6287200
------>
ZmHOX2a(2)
<---------
ARR14(3)
<-----------
ARR10
--------->
ARR14(3)
<---------
GLK1(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
CCA1(2)
<---------
ICU4
--------->
YAB1
<------
ZmHOX2a(2)
<---------
AHL20(2)
<-----------
GT1
<---------
YAB1
--------->
AGP1
<<<<<<<<<
TBF1
<---------
DAG2
--------->
AHL20(2)
<<<<<<<<<
TBF1
<----------
DOF2
--------->
YAB1
--------->
YAB1
<<<<<<<<<
TBF1
--------->
HSFB2a(2)
*
TSS
-
-->
HSFB2a(2)
<---------
AHL20(1)
XXXXXXXXXXXXXXXXXXXX>
MIR847
<---------
ANAC58
-
---
HSFB2a(2)
--------->
AHL20(1)
<-----------
GT1
<<<<<<<<<
TBF1
<---------
ANAC58
-------
aaactgatcaaaatcgaatataataatctcacagatcttctcagtatcactcttcttcttcttcttcttctacaatttgcttttttcagt
tttcagtcaa
6287300
-
<---------
ALFIN1
<
----------->
HVH21
<
--------->
At4g35610
--
----------->
GT1
--------->
ANAC55(2)
<------
MYB83
<XXXXXXXXXXXXXXXXXX
<------
MYB46(1)
<---------
AHL20(2)
-
<------
ZmHOX2a(1)
<-----------------
AGL1
<---------
ANAC55(2)
----------->
CBF
<-----------
RAV1(1)
--------->
AHL20(2)
--
-------->
AHL20(2)
------->
TEIL
<---------
CCA1(2)
<---------
YAB1
-------
-->
YAB1
<---------
At4g35610
<----------
DOF2
----------------->
AGL1
<-----------
GT1
aattcaataggaaggtgacacctcgatggacgtagaatagtatgggcttttatctcttgttgggccattttaggcccatatgatttaatatcacttgtct
6287400
--------->
AtLEC2
------>
MYB83
------>
MYB46(1)
--------->
ANAC46
<---------
ALFIN1
-------->
DEAR3(1)
---------
MYB55(2)
---------
MYB111(2)
------->
ANAC58
--------->
MYB52(1)
XX
MIR1886.1
<---------
YAB1
-------->
MYB46(3)
<---------
ICU4
----------->
GT1
<---------
ZAT6
------->
ANAC58
--------->
ICU4
--------->
DAG2
---------->
DOF2
--->
ARF1
----------->
GT1
---------->
DOF2
<---------
ANAC46
cacccaccatgcagttttcaactttcaacgggtcaatatgactaacaaaaagggtcgtcaattgtgggaaaagagtagtgtttgtttagttccaagtccg
6287500
-
xx
<-------
--------
<----------------
--------->
ATHB12
<----------------
------>
ZmHOX2a(2)
<---------
YAB1
<---------
DAG2
<-
<------
ZmHOX2a(2)
--------->
ICU4
--------->
AHL20(2)
--------->
LBD16
<---------
ARR14(2)
--------->
YAB1
----------->
GT1
-----------------
--------->
ARR14(2)
<---------
YAB1
---------->
DOF2
<----------
DOF2
----
acttagaagttagaagtgattttggatccaaaatgttgttttatgatgatttataagaaatttgaagaaagaaaatatagaacttttccgaaatagggtt
6287600
<---------
AHL20(2)
--------->
AHL20(1)
--------->
DAG2
<---------
AHL20(1)
-------->
GLK1(2)
---------->
DOF2
<---------
ARR11(3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
ARR11(3)
--
ZAT6
<---------
ARR11(3)
------>
ZmHOX2a(2)
--->
GT1
<---------
GLK1(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
-
AGL1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
AHL20(2)
-
AG
--------->
LBD16
<---------
ANAC46
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------
GLK1(2)
----------->
ARR10
--------->
LBD16
<------
ZmHOX2a(2)
>
AG
<---------
LBD16
--------->
ARR11(3)
<---------
ANAC58
<---------
ARR14(2)
------->
ARR10
<---------
TOE2(3)
<---------
ZAT6
<---------
ANAC58
--------->
ARR14(2)
agaatctccagggtgcaaataagattttgtgggaaaaaagtagtgtttgtttagttccgagtctgacttagaagtgattttggatccaatatattgtttt
6287700
----------->
GT1
<---------
ZAT6
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
---------->
DOF2
<-----------------
AG
--------->
ARR11(3)
----------------->
AG
<---------
TOE2(3)
--------->
AHL20(2)
--------->
LBD16
<---------
ZAT6
<---------
ANAC46
<------
ZmHOX2a(1)
<---------
DAG2
----------->
GT1
<---------
LBD16
<XXXXXXXXXXXXXXXXXXXX
MIR865-3P
<-----------------
AGL1
<---------
ANAC46
<---------
ANAC58
--------->
ETT(2)
----------->
GT1
<---------
ARR11(3)
--------->
LBD16
<---------
ANAC58
<---------
ETT(2)
<---------
TOE2(3)
<----------
DOF2
<---------
LBD16
<---------
ARR11(3)
<--
tatgtcgatattagaaatttgaggaaaaaaaatgtagaacttttccgaaatagggttagaactctccggagtgtaaataagatttcgtgggaaaagaata
6287800
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AGI:
At4g10050.1
Description:
hydrolase, alpha/beta fold family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO16274.1); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089); contains InterPro domain Alpha/beta hydrolase fold-1 (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase-like; (InterPro:IPR000639); contains InterPro domain Lipase, active site; (InterPro:IPR008262); contains InterPro domain Protein phosphatase methylesterase, eukaryotic (InterPro:IPR016812)
Range:
from: 6284447
to: 6287290
Orientation: Reverse
Links:
TAIR
MIPS
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when using AthaMap.
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