Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             ------>ZmHOX2a(2)                                                                          --------->CCA1(2)                                                                          <------ZmHOX2a(2)                                                                         >>>>>>>>>GATA-4                                                                         >>>>>>>>>GATA-3              <---------ARR14(3)                                         --------->ARR11(3)              --------->ARR14(3)                                         <---------ARR11(3)              <---------GLK1(2)                                          >>>>>>>>>GATA-1              <---------ARR14(2)                                         --------->AGP1              --------->ARR11(3)                --------->ANAC58         --------->ARR14(2)              --------->ARR14(2)                --------->ANAC58         >>>>>>>>>GATA-2              <---------ARR11(3)           ----------->HVH21  --------->GLK1(2)            ----------->ARR10            <---------At4g35610  <---------ARR14(2)     <---------GLK1(2)                   --------->At4g35610  --------->ARR14(2)     <---------ARR14(2)              <----------DOF2         <---------GLK1(2)         --------------     --------->ARR14(2)              <---------DAG2    ---------->DOF2   <---------ARR14(2) ---------->RAV1(1)               <---------ALFIN1---------->DOF2       --------->GLK1(1)   tacaacagatttggaagattttcagactcaaaaactccactttagctgacaagaaaggaaagagaatctagcagagatctacatgtgagaaactaaaaaa  6240400             ------>MYB46(1)     ------>MYB46(1)                 <----------DOF2             ------>MYB83        ------>MYB83                <----------DOF2           --------->TOE2(3)   <---------MYB59         <----------DOF2           <---------MYB59 ----------->HVH21       <----------DOF2      --------->ARR11(3) --------->At4g35610      ------>ZmHOX2a(2)  ---------->DOF2--------->TOE2(3)              <---------ARR11(3)             ---------->DOF2      - ---------->ANAC81<---------------AGL15         --------->ARR11(3)   <----------DOF2              ---   aaaaaaaagataacctaattcttaatctggtgaccaaataaaacccttgtgatctttctttctctttctttctttcatggggaaagagcatcaaacagaa  6240500                                                                                          <--------HAHB4                                                                                          -------->ATHB1                                                                                          <---------ICU4                                                                                          --------->YAB1                            <---------ICU4                                                --------->ATHB51                            --------->ATHB51                                             <---------YAB1                           --------->ICU4                                                --------->ICU4                           <---------YAB1                       --------->ANAC58       --------->YAB1                    --------->AHL20(2)                          --------->ANAC58     --------->ANAC58                    <---------ATHB51                       --------->ANAC58          --------->ANAC58                    <---------AHL20(2)           <---------HSFB2a(2)          --------->YAB1              ----------->GT1                    --------->HSFB2a(2)          <---------ICU4         --------->YAB1  --------->YAB1   <---------TOE2(3)--------->ANAC58  --------->ICU4 <-------- ---------->GT1<------ZmHOX2a(1)    --------->ICU4     --------->CCA1(2)     <---------ATHB12<------- ------->DOF2<---------TOE2(3) ----------->GT1  <---------LBD16 ----------->GT1 <---------YAB1    ---   gaaagtaacaaaaataaggaaaataattcataattgtgaaaattaagttttctggagagacaaggcaagaaaaaaacccatgatgacaagaattattaca  6240600                                                                                               <-----     --------->ARR14(2) --------->AHL20(2)                                                     <-----     <---------ARR14(2) <---------AHL20(2)                                                    -------     --------->GLK1(2)--------->CCA1(2)               --------->ZAT18                         <------    <---------GLK1(2)<---------ARR11(3)             <---------------AtSPL8                    ------- -YAB1--------->At4g35610                          <---------ANAC46                          -------- ----GT1             --------->ARR11(3)        <---------------------WRI1      <------ZmHOX2a(2) ------>ZAT2 <---------ARR14(2)          <---------AtLEC2                     --------->ARR11(3)   <-   agcttggaatctgcatatatagagatataaatgtagagtttttgaatgaagagatgtgtacaaagatgggaacttgatgagatcaagaagtgttttcctt  6240700                                                   ------>MYB83                                                   ------>MYB46(1)                                                 --------->MYB46(3)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                --------->ANAC58      >>>>>>>>>TBF1                             --------->ANAC46              <----------DOF2 -----DOF2                                      --------->ANAC58      <---------ARR14(2) ----DAG2 ----------->GT1                  <---------ANAC58           --------->ARR14(2) -->TOE2(3)                                <---------ANAC58        <---------HSFB2a(2)         ------ ---------AGL15                       --------->ARR14(2)        <----------DOF2                <----- -------->AGL15                       <---------ARR14(2)      --------->At4g35610              <----- --------->AGL1     ----------->HVH21 --------->GLK1(2)       <---------At4g35610   <----------DOF2 - --------YAB1---------->DOF2    --------->TOE1(2)<---------MYB55(2)--------->HSFB2a(2)  <----------DOF2   tatgagaagaagaagtaaagacatgacagacagacctgagaatttgcttcacccaactcaattcagctttcggaaactctctttctctttctttctcctt  6240800      *TSS                   --------->AHL20(2) --------->AGL15     ----------->GT1    ----------->GT1 ----------AGL15   ---------->DOF2   <------ZmHOX2a(1)         <---------ARR14(2) -----DOF2  ------------------------>ANAC81                    --------->ARR14(2)     <----------DOF2 --------->DOF2---------->DOF2     <---------TOE2(3)           --------->GLK1(2)  <---------GLK1(2)   tataaagaaaacaaaacaaaagaaagaaaaaaaaaatgaggaaagtttattttgagttttttgagaatcccaaaaacaaacccaaattcttttctcttca  6240900                                                                                                <----                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                              <------               --------->ANAC46                                                             ---------               --------->ANAC58                                                           <-------GAMYB               --------->ANAC58                          ------>MYB83                    <---------MYB46(3)        <---------GLK1(2)                                ------>MYB46(1)                <---------ANAC46       <---------HSFC1(2)                     <----------DOF2      ---------->DOF2     <---------LBD16       --------->HSFC1(2)                 <----------DOF2>>>>>>>>>>>>>>>>>LFY  <---------YAB1 <------   aaaaccctaagcttctcactcaatatgtctatttgtagacgtttctttctttgctcaccttccaatgtccaaagtgagattgcgattgctgcggttgcgg  6241000                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                    <---------YAB1                               ----                                            --------->YAB1                                       ---- ---GAMYB                                   --------->TOE2(3)                                   ----- ----MYB46(3)                         --------->TOE2(3)                                     --------- ---ANAC58                           ----------->RAV1(2)                                    --------- ---RAP2.6(2)            --------->YAB1  <---------GLK1(2)                     <----------ID1   ----- ---ANAC58              <---------AHL20(2)------->TEIL                         ----------->GT1  ----- --->AtMYB77            <---------YAB1--------->TOE1(3)  ----------->GT1    ---------->DOF2 --------- ---ANAC46    ------->TEIL <---------YAB1<---------CCA1(2)            <---------TOE2(3) --------->MYB52(1)   ttgccacttgccaatgcatttgctatattataaaaaaaaacctgaatcttaattttgaatagaaaaaattttaagaatgaaaggaaaaaataacgagcaa  6241100     ----------->GT1    --------->DAG2   ---------->DOF2 ---->GAMYB ------------>AGL15 -------------AGL15 ----->MYB46(3) ------------->AGL3 ---->ANAC58                --------->At4g35610                       ------>ZmHOX2a(1) >ANAC46              <----------DOF2                             --------->GLK1(2) >ANAC58      <-----------GT1                                    <---------GLK1(2)               ---- ---->ANAC58 <-----------GT1<---------At4g35610                <---------YAB1                  <----- --->P      <---------AHL20(2)                                 <---------TOE2(3)            --------- >ANAC58  <---------YAB1   <---------TOE1(3)---------->DOF2    <---------TOE1(3)            <--------   ccaaaaaaagttattttaacctttcttttaagctaaatcgcacatataaagtattagtagtatttaagattcctacaaaactcttaagtgtgagtatttg  6241200                                                                                                    -                                                                                                   --                                                                                            <--------                                                       <---------ICU4                       ---------                                                       <--------HAHB4                       <--------                                                      --------->ICU4                      -----------                                                      <---------ATHB12              --------->ANAC58<        <---------YAB1                           --------->ANAC58                   --------->ANAC58<  <---------AHL20(2)                             --------->ANAC46              --------->ANAC46    <-  --------->AHL20(2)                        <-------TEIL                       --------->ANAC58    -- ------>ID1                              --------->At4g35610                   --------->ANAC58    <- ------RAV1(1)                          --------->ANAC58                      <---------LBD16-------- >ARR14(2)                              --------->ANAC58                    <---------ZAT14 --------- -ARR14(2) <---------YAB1      --------->GLK1(2) --------->ANAC58          <-----------HVH21---------   ttgtttaattcttatttttgtagagaaatggagactctagctaagctacatgcgccatcatttcatactttggccaagttcacggcaagaccaagatttg  6241300  Previous    Next  AGI:  At4g09960.1    Description:  STK (SEEDSTICK); transcription factor. Identical to Agamous-like MADS-box protein AGL11 (AGL11) [Arabidopsis Thaliana] (GB:Q38836;GB:Q8VZ36); similar to SHP2 (SHATTERPROOF 2), transcription factor [Arabidopsis thaliana] (TAIR:AT2G42830.1); similar to MADS box protein GHMADS-2 [Gossypium hirsutum] (GB:AAN15183.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 6236470    to: 6240806    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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