Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <--------P                                                                                   <---------MYB52(1)                                                                              --------->ARR11(3)                                                                              <---------ARR11(1)                                                                              --------->ARR14(2)                                                                              <---------ARR11(3)                                                                              <---------ARR14(2)                                                                             <---------CCA1(2)                                                                           --------------->AGL15                                          ---------->DOF2                  <---------------AGL15                                        <xxxxxxxxxxxxxxxxsmallRNA(i)      ----------------->AGL2                                       --------->ANAC58                   ----------------->AGL1                                       --------->ANAC58                   ----------------->AG   ---------->DOF2                    --------->SPL7                      <-----------------AGL3 --------->ETT(2)             --------->ZAT18                             <-----------------AGL2 ------RAV1(1)  ----------->GT1      <---------MYB52(1)             --------->HSFB2a(2)        <----- ->YAB1 ----------->GT1       <---------ZAT18  <----------DOF2      <---------HSFB2a(2)        ------   ttgtcgaaaggagtaaaattgtaaaacgagagtgcatccgttcgcaaagctttagtaacaatagtctgttccataaaccatatctggtagtcatgggatg  5957700                                                                                                    <                                                                                                   --                                                                               ---------->DOF2    ---                                                                             <------ZmHOX2a(2)    <--                                               <-----------GT1               ========================                                           --------->YAB1      <---------ARR14(2)          --------->ANAC58                   <---------DEAR3(2)     <---------YAB1       --------->ARR14(2)       ----------->TGA1              --------->At4g35610         --------->ICU4       <---------GLK1(2) ----------->GT1  <--   ----------->HVH21                    --------->YAB1--------->YAB1   <---------ARR14(2)  --------->ANAC46 ------RAV1(1)<---------At4g35610      <---------ZAT6<---------ATHB12  --------->ARR14(2)  --------->ANAC58 --->ALFIN1 ---------->CDC5 ----------->GT1<---------ICU4   --------->YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ttgctctcacagactcagcgtcgtttcggaccgagaaattagtgataattatccactcatactcatattctcgtattcgatcaaagtaaaatgacgcaag  5957800                                                     <-----------GT1                                                  --------->YAB1                                               --------->AHL20(2)     <------ZmHOX2a(1)                        --------->AHL20(2) <---------ANAC46                             <---------ATHB12 <---------O2                                 <---------ATHB51                                      - ------NtERF2                            --------->ANAC46                    ---------->DOF2     <--- ---->NtERF2                    ------>NtERF2 <---------AHL20(2)         <---------ANAC55(2)     ---- -------->HVH21        --------->HSFB2a(2)  ------>MYB83                 <---------ANAC46     ------- --------ID1          <---------LBD16  --------->REM1(1)            --------->ANAC58      <---------AHL20(2) ===========HOX2a_HOX2a<---------HSFB2a(2)  ------>MYB46(1)         --------->ANAC58      --------->AHL20(2) -------DEAR3(1)  --------->ATHB12     --------->ANAC46     <---------AHL20(2)   <----------ID1  <---   gcgacgaggaatggtagccttgattcgggaacggggaccctacaccaaataattttaactatatacttgcaagttatgtgaaagaaacaaaattaaacat  5957900           <---------At5g28300      <---------ARR11(3)      --------->ARR11(3)      --------->AHL20(2)                                         <---------DAG2      <---------AHL20(1)                                         <----------DOF2      --------->AHL20(1)                                  ----------->RAV1(1)      <---------AHL20(2)----------------->AGL1           <------NtERF2                       <xxxxxxx -------->ANAC46     ------>ZmHOX2a(2)                  ------>NtERF2                     --------->ANAC58 ------GLK1(2)      <---------At4g35610                --------->PCF2                     --------->ANAC58 ----->ARR14(2)     --------->At4g35610              --------->LBD16         <-----------HVH21 -->YAB1  <-----------GT1  --------->ICU4            --------->At4g35610   <<<<<<<<<TAC1  --------->ANAC46 ------ARR14(2)<---------MYB52(1) ------>NtERF2    <---------LBD16       --------->ZAT6  <xxxxxxxxxxx   attcgcaatatattaccgtttgatctgccaatatgaggcccagtttgaactcatccggtgccacaaactttttgaacactgtcacaacaaaaacgcaaat  5958000                                                                                     --------->ZAT18                                                                                     <---------ZAT18                                                                                     <---------DEAR3(1)                                                                                    --------->ALFIN1                                                                                  <---------ANAC46                                                                           <---------YAB1                    ---------->DOF2                                    <----------DOF2            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                       --------->TOE2(3)<---------PCF2         --------->YAB1                 --------->GLK1(1)             <---------------AGL15    --------->MYB46(3)                  <---------GLK1(1)             --------------->AGL15<--------- xxxxxxxxxxxxxxxsmallRNA(se3)          --------->ARR11(3)       ------>NtERF2     <---------ANAC58 xxxxxxxxxxxxsmallRNA(se3)            --------->YAB1  *TSS--------->MYB52(1)      <---------ANAC58   agtccatccactgatagtcggacaaagttcggaaacagaatgatatccatccatgttgacaaacgacgacttcctttattagtggggtgggctctttttt  5958100                                                                                              <------                                                                                            <xxxxxxxx                                                                                           ==========                                                                                           --------->TGA1a                                                                                           <---------O2                                                                                           <---------ZAT2                                                                           <------MYB46(1) --------->ZAT2                                                                           <------MYB83    ----------                                 --------->YAB1                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                     ----------->GT1                               ----------->HVH21       <---------At4g35610                     <---------ANAC46              --------->AHL20(2)  --------->ATHB12    --------->O2                   ----------->GT1       ------>ZmHOX2a(1)        ------>NtERF2            --------->At4g35610              <---------YAB1   <------------CBF    --------->YAB1--------->ANAC46         ------>NtERF2     <------ZmHOX2a(1)     xxxxxxxxxxxxxxxx>smallRNA(i)       --------->ANAC46   --------->ANAC46 -DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------AHL20(2)  <---------YAB1     <---------ALFIN1   ttggataggatgaaatatgaatggtgtaaaatcgattgtaatcctgtcttaaataatattccaaacgacgcgacgattggtactcgcagtgccacctgtc  5958200                        <---------ANAC58                        <---------ANAC58                       --------->ATHB12                      --------->WRKY38(1)                 <---------ANAC46                        --------->At4g35610              ------->GAMYB                              <---------At4g35610              ----------->HVH21                      -------->ZAP1             <---------MYB52(2)                    >>>>>>>>>>WRKY11             --------->MYB46(3)                    >>>>>>>>>>WRKY6                     --------->MYB52(1)            --------->At4g35610          --------->REM1(2)    ------->TEIL          --------->ANAC58 -----HVH21 <---------At4g35610        --------->LBD16 <-----------RAV1(2)          --------->ANAC58 xxxxxxxxxxxxxxxsmallRNA(se3)      ------>NtERF2  --------->WRKY38(1)     <---------TOE1(2) =====================MYC_MYB  <---------bZIP60(1)----------->HVH21     <---------TOE2(1) ->RAV1(2)  ----------->RAV1(2)--------->bZIP60(1)--------->WRKY12      <---------TOE1(1)--------->MYB46(3)   actgctaatatttcaactgacgcgttgattgtgatgccacccgtgtatatagttgacccagatgaacctgttgtactaggtttgccaaacaacgactagt  5958300                                 <-----------RAV1(1)                                             ----                              --------->GLK1(2)                                               <------ZmHOX2a(1)                  --------------->AGL15                         <---------ICU4              <--------       ------->TEIL <---------YAB1                      <---------YAB1          <-----------ARR10<---      <xxxxxxxxxxxxxxxxsmallRNA(i)<-------GAMYB --------->TOE2(3)     --------->LBD16     ---------->DOF2   tcgtagttgaacctgttgaactatgtttggcaattctgttgaactaaaaaacttaactatgcttaaaaattccgaaaacacaaatctaaacacaaaggat  5958400                                                                     --------->YAB1                                                                <---------DAG2          ------->TEIL                                 --------->ANAC58      <---------WOX13(1)             --------->LBD16   --------->ANAC46                        <----- ----->KAN4(1)  <---------ETT(2)     --------->HSFB2a(2)        <----------DOF2              -------- -TOE2(3)<-----------GT1    <-----------GT1            --------->ANAC58                      -------- ------KAN4(1)<-----------HVH21      <---------HSFB2a(2)  ---------->DOF2                  ----------   tgttcttaattgaacctgtcgaacaatatttgacaattccgagaaacacaaatttacacacaaagactttatcgtagttgaacttcttgtactagttgac  5958500                  <---------MYB46(3)              --------->ATHB12              <---------ICU4             --------->ICU4             <---------YAB1          <---------ALFIN1           --------->YAB1            --------->AtMYB61           <---------ICU4         <---------ALFIN1        --------->WOX13(1)        --------->AtMYB61     --------->TOE2(3)            ------->GAMYB                <----------DOF2   <---------TOE2(3)             --------->MYB46(3)        <---------CCA1(2)                    <----   <---------TOE1(3)             <---------MYB55(2)      --------->ANAC46             --------->ABI4(2)  --------->MYB52(1)             <---------MYB111(2)    ------->MYC3                  ------>NtERF2  <---------DOF5.7(2)  <-----------RAV1(2)              <-------MYC3               <---------RAP2.3(1) ------------------TaNAC69(2)<------NtERF2             --------->ANAC58           <---------DEAR3(1)< ->WRKY12 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->O2<---------YAB1 <---------RAP2.3(3) --->HVH21<---------ATHB12   --------->At4g35610       --------->ANAC58        <----------DOF2 <----- ------------->TaNAC69(2)    <---------At4g35610  --------->bZIP60(1) <---------YAB1 <---------DEAR3(1)   gagttaacgtcaatcatcattggtttcaggctgcaaccacctctccaagttgatgccacgcgtagctttgttattagtcttctttcggcgcttctcacct  5958600  Previous    Next  AGI:  At4g09400.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33230.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) Range:  from: 5953223    to: 5958054    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g09410.1    Description:  transposable element gene. Mutator-like transposase family, has a 1.4e-40 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 5958510    to: 5961073    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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