Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------ALFIN1                                <---------ZAT14                                --------->LBD16                               --------->ANAC58                               --------->ANAC46                       --------->AtMYB61                       <---------ALFIN1                    --------->ANAC46                                                       ----------                    --------->ANAC58                               --------->ARR14(2)      ------>NtERF2                    --------->ANAC58                               <---------ARR14(2)     <---------ALFIN1                  --------->AtMYB61                               <---------ALFIN1----------->HVH21 --------->YAB1   ----------->RAV1(1)                        --------->ETT(2)    <-----------HVH21 >GAMYB           <---------ALFIN1                      --------->LBD16--------->LBD16   --------->MYB46(3) --MYB52(2) <---------ARR14(2) --------->ANAC58     ------>ZmHOX2a(1)<---------LBD16   --------->PCF2 ->MYB46(3) --------->ARR14(2)<---------LBD16 --------->ZAT6 <---------ETT(2)    --------->LBD16 --------TaNAC69(2) <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------LBD16   caatgttaagagcgaaacccccacaccactctcccgcactgtttcttagcactcctcccgctgtagccagacccggattaccccgtgatgccccaccagt  5772500                                         <---------MYB52(1)                                       --------->YAB1                                      --------->MYB46(3)                                      <---------ATHB12                                     ------>MYB46(1)                                   --------->MYB46(3)                                   ------->GAMYB                                   --------->AtMYB61                                   <---------MYB111(1)                                  --------->MYB46(3)                                  --------->DEAR3(2)                        <---------MYB52(1)                                  <---------MYB55(2)                  <---------HSFC1(2)                                  <---------ATHB12                    --------->HSFB2a(1)                                  <---------MYB52(2)             --------->LBD16                          --------->ANAC58                       --------->HSFB2a(2)                   <---------MYB52(1)-------->P              --------->ARR14(2)             <---------MYB55(2)  --------->ANAC46            <---------ARR14(2)             --------->MYB46(3)  ------>MYB83            ------>NtERF2--------->HSFC1(2)            --------->ANAC58     --------->ANAC58       ------->GAMYB <---------HSFB2a(1)            <---------ALFIN1     -------->P            --------->DEAR3(2)  <----------DOF2            --------->ANAC58     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)------->TEIL                  <-           ------>NtERF2  --------->ANAC58             --------->MYB46(3)  <---------DAG2       -----          --------->RAP2.6(2)    --------->ANAC58     ------>MYB83  <---------ARR14(2)          -----          <---------ALFIN1<---------ALFIN1            ------>MYB46(1)--------->SPL7             -----         --------->MYB46(3)      ------>MYB46(1)      --------->SPL7--------->ARR14(2)          <----        --------->At4g35610 --------->ANAC46      --------->ANAC46  <---------ALFIN1           <-----        <---------At4g35610 --------->ANAC58      --------->ANAC58--------->LBD16              <-----  <---------At4g35610--------->MYB59 ------>MYB83 --------->ANAC58--------->ANAC46    ---------------  --------->At4g35610--------->MYB46(2)<---------ICU4 -------->P <---------HSFB2a(2)  <-------------- ->RAV1(1)--------->DEAR3(1)--------->ANAC58    <---------ALFIN1<---------LBD16<---------YAB1 <------   attgagcttcagccacccatcgttaggcacaccccaaccaaccattacttccaccctaccgcctatccccgaacctcctttatgtttactagtagcggta  5772600      ------>ZmHOX2a(1)     --------->TOE2(3)                                                        <---------ALFIN1 ----------GT1                                                              ------>NtERF2 ---->MYB46(2)                                                             --------->ANAC46 ---->MYB111(1)                                     ------->MYC3          --------->At4g35610 ---->MYB52(2)    ------>ZmHOX2a(1)       <---------ALFIN1           <---------YAB1             ----- -----MYB46(3)   --------->TOE1(3)      ------>NtERF2           --------->ANAC58               ------ ---P--------->TOE1(3)  <-----------GT1--------->ANAC46         --------->ANAC55(1)            ------ ----MYB55(1)    --------->TOE2(3)     <---------ETT(1)         --------->ANAC55(2)          <------- >AGL15    --------->ANAC46  --------->TOE1(1)      <-------MYC3<---------ANAC55(2)      --------->ZAT18 -AGL15    --------->RAP2.6(2)         --------->LBD16          --------->ANAC46      --------->ANAC58 ---MYB52(1) <---------ALFIN1--------->TOE2(1) -------->P       --------->ANAC58      --------->ANAC58   gttacttccttagccgcatccttaataaacctcgttctatcccgacacttaccacgtttgtcaaacacgttatcacagcgccacttccaagcccaccaaa  5772700                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                               ======                                           <-----------HVH21                   --------->MYB46(3)<---                                          --------->LBD16                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                         --------->LBD16         <-----------GT1        ---------->DOF2    ----------->GT1                     <---------LBD16       <---------YAB1<---------WRKY12  ------- ----->DOF2                            <---------LBD16      --------->YAB1  <---------WRKY38(1)<----- >MYB46(1)      --------->WRKY38(1)   <-----------GT1      <---------YAB1  <------ZmHOX2a(2)  <------ >MYB83         --------->WRKY12 <---------AHL20(1)  <---------TOE1(2)     ========================== --MYB111(1)    <---------ETT(2)<---------CCA1(2)    <---------TOE2(2)     ==========================   tagccatcgtgaaaaccgtagaccatacactctcatatatttcccggtcatcacctaggttatcatgctaccattcgatcaacgactgtgcaaagaagga  5772800        ------>NtERF2        <---------At4g35610        --------->ZAT2        <---------ZAT2        --------->At4g35610       --------->DEAR3(1)      --------->RAP2.3(1)     ------>NtERF2     <---------ATERF1(1)     --------->LBD16    --------->DEAR3(1)    <---------ALFIN1    --------->ANAC46  ------>ZmHOX2a(1)  <---------ATERF1(1)  ==============================HOX2a_HOX2a --->ZmHOX2a(2) ----->GLK1(1) ---ZmHOX2a(2) ---->ARR14(3) -----ARR14(2)                                          --------->LBD16 -----ARR11(3)                               --------->LBD16 ---->ARR14(2)                              <---------ANAC46 ---->ARR11(3)               ---------->DOF2<---------ANAC58 -------ARR10            <------ZmHOX2a(2)  <---------ANAC55(2) ===============================HOX2a_HOX2a <---------ANAC58 ------GLK1(1)           ==================HOX2a_HOX2a --------->LBD16 -->HSFC1(2)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -ZmHOX2a(1)        --------->CCA1(2)       --------->ANAC55(2)      --------->YAB1 ---HSFC1(2)       --------->ARR11(1)      <---------LBD16    ----------->GT1 ========HOX2a_HOX2a<-----------GT1   ----------------->AGL1<------ZmHOX2a(1) =HOX2a_HOX2a     --------->YAB1    ------>ZmHOX2a(1) <---------HSFB2a(2)                      <-----   tctcctccgccgctggggaatgatacgatcccaaagtcctgccattgcgggacaatcccgaaggatgtgaataatcgtctcacttccccccttacagact  5772900                                                                                                    <                                                 <---------YAB1                                     -                                              <---------MYB52(1)                                   <-                                              *TSS                       ---------->DOF2           --                                             <-----------HVH21        -------->P                  ---                                            --------->ANAC46         --------->MYB52(1)           <--                                     ---------->CDC5 --------->ARR11(3)--------->MYB46(3)       <----                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------MYB52(2)           <----                   <---------At4g35610 <---------At4g35610       ------>NtERF2                 ------                   --------->At4g35610 --------->At4g35610      --------->LBD16       <-----------GT1 ----O2           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <xxxxx   tggcaaacatctgttatacacagatgccttctaaatcgctcagcatccgtcattagagcttgattcccgactaaccaaagaaacatttttgctctctccg  5773000          --------->LBD16        --------->ANAC46       <---------MYB55(2)       --------->MYB46(3)       --------->DEAR3(1)      --------->ANAC46      ------>MYB46(1)      ------>MYB83      --------->ANAC58      <---------ALFIN1      --------->ANAC58     --------->ABI4(1)    --------->AtMYB61    --------->DEAR3(1)    <---------ALFIN1   --------->MYB46(3)  ------>NtERF2  <---------ATERF1(1) <---------ALFIN1 --------->ANAC46 --------->DEAR3(1) ------NtERF2 -------->ATERF1(1) --------ATERF1(1) ---->NtERF2 ------>DEAR3(1)                                                                           xxxxxxxxxx -------ETT(2)                                                                           xxxxxxxxxxxx -------HVH21 <-------MYC3          ----------->RAV1(1)                                  xxxxxxxxxxxx -----ATERF1(1)                    --------->ANAC46                  ---------->DOF2    <xxxxxxxxxxxx --->ANAC46   ------->MYC3     ----------->RAV1(1)       <---------GLK1(2)              <xxxxxxxxxxxx xxxxxxxxxxxsmallRNA(i) ---------->DOF2     <----------ID1        --------->TOE2(3)    xxxxxxxxxxxxxx   tcgccaccaccccccatatgcgactaaaaagaacaacacaacatatacaacaaaacatagaatatcaacattaaagaatataaaaaatatcaacaaaaca  5773100                                                    --------->AHL20(2)                                                    <---------AHL20(2)                                                    <---------AHL20(1)                                                    --------->AHL20(1)                    <---------AHL20(2)       --------->YAB1     <----------DOF2                   --------->AHL20(1)       <---------YAB1  <---------ICU4                   <---------AHL20(1)   --------->YAB1      --------->YAB1                 <---------AHL20(2)     --------->AHL20(2) <---------ATHB12                --------->AHL20(2)    --------->AHL20(2) --------->WOX13(1) xxxxxxxxxxxxx>smallRNA(se3)       --------->AHL20(2)    <-----------GT1 xxxxxxxxxxx>smallRNA(fl3)         --------->AHL20(1)    --------->YAB1       <---------RVE1(1) xxxxxxxxxxx>smallRNA(se3)         <---------AHL20(2)  <---------YAB1        <---------GLK1(2) xxxxxxxxxxsmallRNA(i2)       --------->AHL20(2)--------->AHL20(2)       ---------->DOF2 xxxxxxxxxxsmallRNA(l2) --------->AHL20(2) --------->ARR11(3)  <---------ICU4--------->ARR11(3) xxxxxxxx>smallRNA(se3) <---------AHL20(2) <---------ARR11(3) <---------YAB1 <---------ARR11(3)   tatacaactcgcagtgtattatatatttaaaatcaaataaaataatatcataaatttattaatcatctttacaaaaaaagatttttagtttaactaaaat  5773200                       <-------GAMYB                     --------->LBD16                    <---------ANAC46                   <---------LBD16                   xxxxxxxxxxxxxxxx>smallRNA(i)                   --------->LBD16                                              <---------YAB1                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                --------->TOE2(3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                --------->ARR11(3)              --------->ZAT14                                      <---------ARR11(3)              <---------ZAT14       <---------ZAT18               --------->CCA1(1)             <xxxxxxxxxxxxxxxxsmallRNA(s)                         --------->RVE1(1)             <xxxxxxxxxxxxxxxxsmallRNA(i)--------->YAB1    --------->YAB1    <---------YAB1         <---------LBD16     <---------ARR11(3)            ----------->GT1  --------->TOE2(3)         --------->LBD16     --------->ARR11(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->YAB1 <        --------->ANAC46<--------P <---------ZAT6         <---------YAB1   --------->YAB1           <       <---------LBD16----------->GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------ICU4<---------ANAC55(2)     -------->Pxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <------ZmHOX2a(1)    <---------ATHB12     <-----   ataaacttacccgcggtataccgcgggttaatatctagtgcaaacatatttagtaggagtatcataaaaaatctcaaacattataaataatacttaaaaa  5773300                                                                                              <------                                                                               <---------AHL20(2)                                                                               <---------AHL20(1)                                                                               --------->AHL20(1)                                              ----------->GT1                  --------->AHL20(2)       <-----------GT1                 --------->ATHB51                       --------->AHL20(2)     --------->YAB1                    -------->ATHB1                   <---------ARR11(3)--------->AHL20(1)    <---------YAB1                     --------->YAB1                 --------->ANAC58    <---------AHL20(1) ------>ZmHOX2a(1)                    --------->ICU4                  --------->ANAC58    --------->ARR11(3) ---------ANAC58                      <---------YAB1               --------->LBD16      ------->TEIL ---------ANAC58              <-------TEIL  <---------ANAC46      --------->ANAC46   <---------YAB1 ----ICU4        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <---------LBD16  --------->ICU4 <---   ttccttatgataccatatgagtatcacccatatacatgctattattgtgggtaaaaatagatagttttgcgcaagacctattaaattatgaatattttga  5773400  Previous    Next  AGI:  At4g08995.1    Description:  transposable element gene. pseudogene, similar to putative reverse transcriptase., similar to putative reverse transcriptase; blastp match of 24% identity and 4.4e-09 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)} Range:  from: 5772059    to: 5772946    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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