Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              ------>ZmHOX2a(1)                                                      <---------ALFIN1                                                     ------>MYB83 --------->MYB52(1)                                                     -------->P<---------ANAC55(2) <---------AHL20(1)                                  ------>MYB46(1) --------->AHL20(2)              --------->YAB1     ----------->RAV1(1) <---------AHL20(2)             <---------YAB1     --------->AtMYB61 -------->AHL20(2)   ----------->GT1              --------->MYB46(3)           ----------->GT1     <- ------>TOE2(3)    <---------ANAC58             <-----------GT1--------->ANAC55(2)               <--- ---TEIL           <---------ANAC58 --------->AHL20(2)--------->ZAT6 ------->GAMYB      ---------->DOF2   cattaaatttttaagttcaaggcttgttaaaaacatcataaatttgtatttcaccaacactccttacataaccgagtatgcctgtaaaaaaaaagaaatt  4751600                                 <---------MYB52(1)                             <---------At5g28300                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                           ----------->HVH21                               <---------ATHB12       ---                  <---------AHL20(2)                                     --------->WOX13(1)      ----                  --------->AHL20(2)                                <----------DOF2             <---- ----------GT1    --------->AHL20(1)                              ---------->ID1                ----- ------AHL20(2)  --------->AHL20(2)    ---------->DOF2        <---------MYB52(1)               ------   ttaacagaagttgaagaaaaaaaattgctctcaccgtttgtcaaagtgagaaatggtttccacagtttgtcttttcaatcaatttcggacaaaaataccc  4751700                                  <---------At4g35610                               --------->SPL7                              --------->SPL1(1)                             <---------SPL7                             <---------SPL1(2)                         --------->MYB52(1)                         ------>MYB83                       <---------MYB59                       --------->AtMYB61             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       ------->GAMYB<---------MYB46(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        --------->TOE2(3)------>MYB46(1)          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>LBD16         --------->MYB46(3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ANAC46 ----->LBD16         -------->P---------->DOF2   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->ANAC58 -----LBD16         --------->WOX13(1)  <------MYB46(1)                                --------->MYB52(1) ---->TOE1(2)      --------->MYB46(3)   <------MYB83<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->ANAC58 ----->RAV1(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <-------TEIL <----------ID1          -   tgggaaaatttcttaatggcatcaaccaaaccgtacagcagttggtatcggtttagttgatgcggttcagttttgaaaacgacaaaaaaaaacgaaacaa  4751800                ---------->DOF2           >>>>>>>>>TBF1                --------->CCA1(2)                            ------>ZmHOX2a(1)           ------------------------>ANAC81              ---------->DOF2        <---------ALFIN1        >>>>>>>>>TBF1                  <---------ARR11(3)                      xxxxxxxxxxxxxxxxxxxxxx        ------------------------>ANAC81--------->ARR11(1)--------->DAG2     --------->ARR14(2)     <x -------->MYB52(1)                 ---------->DOF2   --------->AHL20(2)     <---------ARR14(2)   ----   aaaaaccgaagaagaagaaaaagagaagagagaaacagaaagatttgagagagaattaaaaagctgttcgaaattcagtatccactccttcatatttcga  4751900                        <------------CBF                   <-------GAMYB                  --------->MYB111(2)                  --------->MYB46(2)                  --------->MYB55(2)                  --------->MYB52(2)                  <---------MYB46(3)                  --------->MYB111(1)                                                          ------               <---------ANAC58                                                                ------               <---------ANAC58                                                               <------               <---------ANAC46                                                              <-------               <------MYB46(1)                                                            <---------HSFC1(2)              --------->MYB55(2)                                                          --------->HSFB2a(1)              --------->MYB59                  <---------LBD16                            <---------HSFB2a(1)              <---------MYB46(3)             --------->GLK1(2)                            --------->HSFC1(2)          --------->ATHB12                   <---------ARR14(2)                           --------->MYB46(3)          <-----------RAV1(1)      <---------ZAT14                                      --------->ARR14(2)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->ARR14(2)<---------REM1(1)        <---------ARR14(2) >smallRNA(si3)<------MYB83        --------->ZAT14        ---------->DOF2              <------ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                --------->ANAC58 ----->bZIP60(1) <--------P   --------->MYB46(3) --------->LBD16                     --------->ANAC58   catcacttcgaattgttgggtagttgaattgaaccactaaactccaaaatccggcgaagagaaagttgtagttttttctggcgaagtaaggaacctccgg  4752000                                  --------->MYB52(1)                --------->ARR11(3)                    <---------ANAC58                          --------->ANAC58             <---------ANAC46                    <---------ANAC46                          --------->ANAC58       <------ZmHOX2a(1) >NtERF2 <----------DOF2     --------->DAG2              --------->At4g35610 <---------HSFB2a(2) --->LBD16          <---------ANAC58                  --------->At4g35610  --------->PCF5--------->GLK1(2) ---DEAR3(1)        *TSS    ---------->DOF2     ------>NtERF2 --------->ANAC46--------->LBD16-------- --LBD16<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ----------->HVH21    <---------ARR11(3) ---------->DOF2   cgagatagcaactttcgctatggctgggaataaagcaaacgacgaagtcccgacgaagcagcatacccaagatagtggtccagagaaggagaagcgggta  4752100                                                                                      <---------ANAC58                  --------->ARR14(2)                                                  <---------ANAC58                  <---------ARR14(2)          --------->ARR14(2)                  <----------DOF2              <------NtERF2                   <---------ARR14(2)                  -------------------             --------->LBD16                 <------ZmHOX2a(1)             --------->MYB55(2)           <---------LBD16               ------->GAMYB                     --------->MYB52(2)           ------>NtERF2                 <xxxxxxxxxxxxxxxxsmallRNA(s)      <---------MYB46(3)      --           --------->LBD16            --------->MYB52(1)                 <---------MYB52(1)        --          --------->ANAC46         xxxxxxxxxxxxxxxx>smallRNA(i)      <---------At5g28300         ----     --------->ARR14(2)            --------->ANAC58       <---------ARR11(3) ---------->ID1     <----     <---------ARR14(2)            --------->ANAC58       --------->ARR11(3)<-------GAMYB    -------- --->GT1 <---------LBD16        ---------->DOF2      <--------P     <-----------GT1   <---------ANAC46   ttaagagtttccccgcggagaaaacgctcttcgacaaaggcaacggaggaactgggttagtatctctaatttaccgtttgttgtctttgagtgtatcaga  4752200                                                       <------ZmHOX2a(1)                                                     <---------TOE2(3)                           ----                                               <---------ARR11(1)                                ----                                               --------->ARR14(2)                                <---      <---------ANAC58                         <---------ARR14(2)                            <-------      <---------ANAC58                         <---------ARR11(3)                            --------  ---------->DOF2                              --------->ARR11(3)                        <----------- -->WRI1                                      <---------ARR14(1)                         <----------- --------->GT1                                <---------CCA1(2)                          ------------ ------->YAB1                                 --------->GLK1(1)                         <---------ANAC46 ----->GLK1(2)                                <---------GLK1(1)               ----------->GT1------->TEIL -----GLK1(2)        ----------->GT1     <-----------GT1                  --------->GLK1(2)  -------- ->YAB1          ---------->DOF2  --------->YAB1  <----------DOF2     --------->YAB1<---------YAB1---   atcgtaaagcttgtttgattaaagggttagaactagtcagaatttagcatatctttaggatggaattttgagttataatctggataatttttgtgtacgt  4752300                                                                     <------ZmHOX2a(2) ----->ZAT18                                                        --------->ARR14(2) ----->ZAT14                                                        <---------ARR14(2) ----TEIL                               --------->ANAC58            --------->ARR11(3) --------AtSPL8                         --------->ANAC58            <---------ARR11(3) ------->AtSPL8                 <---------YAB1                      <---------ARR14(3) ----AtSPL3       --------->ZAT6<---------AHL20(2)                  <---------AGP1                  < ----AtSPL8   <----------DOF2   --------->AHL20(2)          ------>NtERF2 <---------YAB1--------->MYB46(3) --->AtSPL8  <---------ANAC58--------------->AGL15 <-----------RAV1(1)------>ZmHOX2a(2)xxxxxxxxxxxxxx ------->AtSPL3 --------->MYB52(1)      --------->ANAC46  <xxxxxxxxxxxxxxxxsmallRNA(i) <---------At5g28300 ------>ZAT6 <---------ANAC58<----------DOF2       --------->ALFIN1 --------->ARR14(3)<-----------GT1   acactaattcatattgcttaactgtatatcacttttaattgcaagcagtccaagtgttgctccgactgaagatcttatagttgaagagttaccaccaaga  4752400                                                     --------->LBD16                                           --------->SPL7 <-------TEIL                  ----------->GT1                                          <XXXXXXXXXXXXXXXXXXXXMIR826                   <----------ID1            --------------->AtSPL8     --------------->AtSPL8  <---------ICU4          ----------->GT1        <---------ZAT14              ------->TEIL  <---------LBD16                  ---------->DOF2        --------->ZAT14         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             <---------------AGL15 ----------DOF2                <xxxxxxxxxxxxxxxxsmallRNA(s)    --------->YAB1 --------->ZAT18     --- xxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <---------ZAT18--------   ctctttgctctatactggtacccttccaagacgaagatgaacgcgtactctaaaccggagtacatttatgacatagcaaatgcactaaaagggaaaaaag  4752500  Previous    Next  AGI:  At4g07947.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 4752020    to: 4756952    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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