Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <----------DOF2                                    <---------ZAT18                                   <---------ANAC58                                   <---------ANAC58                                   <---------ANAC46                                <---------ATHB12          ----------->GT1                        --------->At4g35610       ---------->DOF2        --------->TOE2(3)          - ---------->HVH21       <---------At4g35610 ---------->ARF1        <---------ZAT6            --------   aactgatggagtctggaggtagagtcttctcccaatggtgtgctttgtctcccaaagagaagggaaatagtcttaacttaaacccatcttcagtaacacc  4747900                          --------->At4g35610                          <---------At4g35610                          --------->ZAT2                       ---------->DOF2                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                <--------                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            <------ZmHOX2a(2)        --------->At4g35610                                                      <---------TOE1(2)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                         <---------ANAC58 -------->YAB1        --------->YAB1                   --------->AtLEC2        <---------ANAC46 ->ZAT6 <---------At4g35610      --------->ICU4      <---------AtLEC2          <---------ANAC58   attgatattcagctacagaccctatcaaagctgtcaagatggtccaaggggtcttccatggaaaaaccatgaaatttgtttccttggatcatggagatga  4748000                                       <------NtERF2                                      ------>NtERF2                                                 <                                     --------->ALFIN1                                               <                                    <-------GAMYB                                                  xx                                    --------->ATERF1(1)                                            <-                                    <------NtERF2                   <---------ANAC58           <-----                                   <---------ATERF1(1)              <---------ANAC46           <-----                                   <---------RAP2.3(1)              <---------ANAC58           <-----                                   <---------MYB46(3)          <---------ICU4             <---------ATHB12                                  <---------DEAR3(1)          --------->ICU4         ------>NtERF2<--       --------->ATHB12           <---------ANAC46            <---------YAB1        --------->DEAR3(1) -At4g35610  ---------->DOF2      <---------DREB2C(2)  <-----------RAV1(2)         --------->At4g35610   gaccgctcttgatttcaaagttgatattttgaactggcggtggcactatcccttgcctctggtgatgattccttggggcatcaccagcgccaatgtttct  4748100                        <---------CCA1(2)                 <------MYB83                 <------MYB46(1)               --------->ALFIN1  xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---------WOX13(1)  <---------ANAC46 --------P   <---------ANAC46                                    <----------DOF2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                       --------->ZAT2                           <- ------GAMYB <------MYB83------->TEIL                     ----------->RAV1(2)             <---------DAG2 ----ANAC58  <------MYB46(1)                              <---------At4g35610             <----------DOF2 ----ANAC46 --------->MYB46(2)                    ------>ZmHOX2a(2)                      <---------ANAC58 ----ANAC58 --------->MYB111(1)         ---------->ID1    --------->At4g35610            <---------ANAC58 -------MYB46(3)<---------MYB46(3)  <----------DOF2       <---------ZAT2             <----------DOF2   tggttgatcaacattaggtgggtcttgtatctcaactcctttgttctattgatccatagcagctggtcttttttgatcacagtatgcctttgctttttgt  4748200                                                   ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                                                 --------->ARR14(2)                                                 --------->AGP1                                                 <---------ARR11(3)                                                 <---------GLK1(2)                                                 --------->ARR11(3)                                                 <---------ARR14(2)                                             <---------At4g35610                                             <---------ZAT14                                            --------->ALFIN1                                          --------->ALFIN1                                        <------MYB83 ------>ZmHOX2a(1)                       --------                                        <------MYB46(1)                    ---------->DOF2   --------                                       --------->MYB111(1)                *TSS  <------------CBF  ---                                      <--------P<---------GLK1(1)   <---------AtLEC2    <---------At4g35610                                --------->DAG2  <---------At4g35610 <---------ANAC58    --------->At4g35610           --------->YAB1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->AtLEC2 --------->ANAC58 --------MYB52(2)         --------------->AGL15----------->ARR10    <---------ANAC58   --------->ANAC58   aactcacgagctattatgtcaattctatctttgaaaggtagtaggtgtgcagatcctttggaccgagtttgcatgcacaaagaattggcaagcagacgaa  4748300                                                        <---------AHL20(2)                                                    <---------AHL20(2)                                                    <-----------TBP  ------------>CBF           -----                                                    --------->AHL20(2)                         ------                                              <-----------TBP<---------YAB1                    ------                                            <---------AHL20(2)      <-----------GT1          ------->GAMYB                                    <---------ARR11(3) <---------AHL20(1)                   ---------                                    --------->ARR11(3)<---------AHL20(2)                    ---------                              --------->ARR11(3)  <-----------TBP xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ->ANAC58                     <---------ARR11(3)--------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ->ANAC58  <-----------GT1---------->DOF2   --------->AHL20(2)   ----------->GT1 <---------ATHB12 ------>AHL20(2)      ----------->GT1 ------>ZmHOX2a(2)--------->AHL20(1)   ----------->RAV1(1)------   aaaaatgtgtttttaacttgagtaatgtaaaagaacttgatcttatttttttatatatatattttgaatgtaacaatgcaacaatgaattggcaacgacg  4748400       <---------ICU4      <---------YAB1      --------->ICU4    --------->YAB1     <---------MYB46(2)   ----------->GT1    --------->ANAC46                                                --------->ALFIN1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              <---------ANAC58 ->NtERF2           --------->ANAC46                                                <---------ANAC58 --->ANAC58       <-----------GT1                                              <-----------RAV1(2) --->ANAC46 <------MYB83                                                     ----------->RAV1(1)  <-- >MYB46(3)  <------MYB46(1)                  <---------GLK1(1)             <---------At4g35610    --- >DEAR3(1) <---------TOE2(3)     ----------->GT1                           --------->At4g35610    <-- --->ANAC58--------->MYB59       <---------ANAC46        --------->ZAT6<---------REM1(1)          ---   ccaaattgataattaggtttttacgcctaactatgttgtgaaatttgatttccccttaaacactaacatgttgatgcagcaacagggggtgtcaattcag  4748500                                                                 <---------ANAC58                                                            --------->ATHB12                 <xxxxxxxxxxxxxxxxsmallRNA(i)               <--------ATHB1            --------->ANAC58                                -------->HAHB4            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <---------ICU4            --------->ANAC58                               --------->ICU4          <---------ANAC58                                 <---------YAB1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)           --------->YAB1          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------YAB1                   --------->AHL20(2)          <---------ANAC58                             --------->AHL20(2)                <---------AHL20(2)       <---------WOX13(1)                     --------->ANAC58   <---------ANAC58     ----------->GT1    <---------YAB1--------->YAB1              --------->ANAC58  --------->MYB59 -------->P   --------->At5g28300<---------ARR11(3)   --------->WRKY18(1)<---------WOX13(1)------>MYB83 -------ZAT18    <---------ATHB12     <---------MYB52(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -------- ------>ZAT18   --------->ANAC58 --------->ANAC46      <---------AHL20(2)       ------>MYB46(1) -------ZAT14   --------->ANAC58 --------->ANAC58      --------->AHL20(1)      ----------->RAV1(1) ------>ZAT14  --------->WOX13(1)--------->ANAC58     --------->YAB1         --------->MYB46(3)   tccactgtaattgctagcaatcaagatgtgtacataagcaactaagtcaagccaaattataatgattgggtccagtagaaccaacatgtgataaatttaa  4748600                                                                            ----------->GT1                                                                           <---------ANAC55(2)                                                                          <---------LBD16                                                                          <---------------------WRI1                <---------ANAC55(2)                                      --------->CCA1(2)                --------->ANAC55(2)                                     --------->ARR11(1)                ----------->GT1                                         <---------ARR14(2)            --------->YAB1                                         <------MYB83            <--------ATHB1                                         <------MYB46(1)           --------->ICU4                                          <---------ANAC46           <---------ATHB12                                       --------->MYB55(2)         --------------->AGL15                                    <---------MYB46(3)         <---------------AGL15                                   --------->ALFIN1        ----------------->AGL1                                --------->ATHB12        <-----------------AGL3                      <---------AHL20(2)  --------->ARR14(2)       --------->ZAT18                  --------->YAB1       <---------ATHB12       <---------ZAT18             --------->AHL20(2)      --------->WOX13(1)        ---------->DOF2  ---------->DOF2         <-----------RAV1(2)      --------->AHL20(2) ----------->ARR10 ->AHL20(2)<---------ATHB51 --------->At4g35610    <---------AHL20(2) <---------MYB46(3)   gaactaaagtgcaataataggtaactcaacaggtgaatgaaataacaatagaataaaattgcaatcagtgggtggatacggataaatcaaagaagaacag  4748700                                                        --------->ANAC58                                                        --------->ANAC58                                                        --------->ANAC46                                                  <---------MYB52(2)                                             --------->At4g35610                                             <---------At4g35610                                             --------->ANAC55(2)    --------->ARR14(2)                 <---------WOX13(1)          ----------->GT1   ----------->GT1               --------->ATHB12            <-----------RAV1(2)--------->DAG2                     ====              <-------TEIL             <-------TEIL --------->MYB52(1)                           <---       <------ZmHOX2a(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <----     <---------TOE2(3)          xxxxxxxxxxxxxxxx>smallRNA(s)---------->DOF2                     -----   ------>ZmHOX2a(1)          --------->ZAT6 <---------ANAC55(2)    <---------ARR14(2)<-------TEIL --   aagtcctaaggatggattcattgacaagagtaactctagggttcatcaggtgactaacaggcaaaaggcaaataccctagacaatagattcaaaaccaga  4748800  Previous    Next  AGI:  At4g07935.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 2.4e-86 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family) Range:  from: 4742553    to: 4748274    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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