Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->ICU4                  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          <---------YAB1               <-----------RAV1(2)                        ----------->GT1                <---------HSFB2a(2)                       --------->ALFIN1                =========================RAV                     <---------ZAT2                    --------->HSFB2a(2)                     --------->ZAT2              <xxxxxxxxxxxxxxxxsmallRNA(s)                    <---------TOE1(2)         --------->GLK1(2)           --------->WOX13(1)                <---------GLK1(2)           <------NtERF2          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ARR14(2)         ------>NtERF2 ------->DOF2      <-----------RAV1(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <---- ---HSFB2a(2)  xxxxxxxxxxxxxxxx>smallRNA(s)  --------->ARR14(2)       ---------->ID1 ----------->GT1 -->HSFB2a(2) --------->YAB1                <---------At4g35610     <-----------RAV1(1)    ---------- -->HSFC1(1)  <---------ICU4               ----------->ARR10 <---------ANAC46 <xxxxxxxxxxxxxxxxsmallRNA(s) ---HSFC1(1) <---------ATHB12             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->YAB1<-------   aaaagccttcttgcaatcatcccaggtggtgattaagtcatggggcagattcttctcccagatgtgtgttttgtcgcccaaggagaatggaaacaacagg  4441200                                                                                             <xxxxxxx                                                                                  ------>ZmHOX2a(1)                                                                                ------>ZmHOX2a(2)                                                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                                                               <------ZmHOX2a(2)                                                                              <---------ARR14(2)                                                                              <---------ARR11(3)                                                                              --------->ARR11(3)                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              --------->ARR14(2)                                                                            ----------->ARR10<xxxxxxx                                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           --------->ALFIN1  <xxxxxxx                                                                         <---------ANAC46    <xxxxxxx                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                    <---------MYB46(3)      <xxxxxxxx                                                                   <---------AtMYB61        <xxxxxxxx                                                                  xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     <------MYB46(1)          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------ZAT14          <------MYB83             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxsmallRNA(i) <---------AtMYB61       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ARR14(2)  <---------MYB52(1)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    <---------ARR14(2) <-------GAMYB--------->MYB59       <-------TEIL  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --ZmHOX2a(1)   ----------->HVH21 <---------MYB52(1) --------->YAB1--------->ALFIN1 --------->ATHB12 ->RAV1(1)  <---------REM1(2)   <---------MYB46(3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxx ----RAV1(2)--------->ZAT14    <---------TOE2(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxx   agtttgaatccgtcttcactgacaccgttgattttggttaggtttggagagcctatcaaattcatcaaggtggtcgagtggatcctccattggcagacca  4441300                                                                                            ---------           --------->LBD16                                                              --------->MYB52(1)          <---------LBD16                                                              ----------->HVH21          ----------->RAV1(2)                                                        ================         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     <-----------------AGL1 xxxxxxxxxxxxxxxxsmallRNA(se3)                                                     ----------------->AG xsmallRNA(le3)  --------->YAB1                                                    ----------------->AGL1 xxxxxxxxxxxxxxxxsmallRNA(le3)            --------->HSFB2a(2)                   <----------DOF2     - xxxxxxxxxxxxxxxsmallRNA(si3)             <---------HSFB2a(2)                  <---------ANAC58    <- xxxxxxxxxxxxxxxxsmallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <---------ANAC58  ---- xxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <-------TEIL ------>ZmHOX2a(1) xxxxxxxxxxxxxxxsmallRNA(se3)      --------->YAB1<---------MYB46(3)================================== xxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ALFIN1<---------------AGL15 xxxxx>smallRNA(s)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <------ZmHOX2a(1)--------------->AGL15   tggaatttgttcccctgaatcatcgagatgagaccactcttaatctcgaagttgttgttttggataacaggaggtgcaattcctttcctctaacggtgat  4441400                                                                                 <---------TOE2(1)                                                                                 <---------TOE1(1)                                                                             <---------ANAC58       <---------ARR14(2)                                                    <---------ANAC46       ------->TEIL                                                          <---------ANAC58       --------->ARR14(2)                                                <---------ANAC46      <---------CCA1(2)                                                  <---------ANAC58    <---------ANAC46                                                     <---------ANAC58 --------->ALFIN1                       <---------MYB52(1)              --------->ZAT2 >At5g28300<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <---------MYB46(3)         <-- ===HOX2a_HOX2a                        <-------GAMYB                   --------->MYB111(2)      <xxxx -------->LBD16                    --------->GLK1(2)    <------NtERF2 <--------P<-------TEIL   xxxxxx --------ANAC46            <---------AtLEC2            ------>NtERF2<---------MYB46(3)  <---------WRKY18(1) -->ZmHOX2a(2)       <---------ATHB12 <-----------RAV1(1)          --------->ALFIN1    --------->WRKY12 ===HOX2a_HOX2a  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------DEAR3(1)<---------ZAT2 --------->WRKY38(1)   cccgtggtgtatctccagcaccaatgtttgcagggccattctgttgattttgttcgtcggccatttcaagtggttgctggggtacaaggttgactgtgtt  4441500                                                             <---------ANAC58                                                             <---------ANAC58                                                             <---------ANAC46                                                          <--------P                                                       <---------YAB1                     --------->CCA1(2)              --------->ARR14(2)               <---------HSFB2a(2)                <------MYB46(1)         xxxxxxxxxxxxxxxx>smallRNA(i)             <------MYB83   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <----------DOF2  <---------ZAT2                --------->MYB111(1)                *TSS xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------At4g35610 ---------GT1  --------->HSFB2a(2)   <---------YAB1 <---------ARR14(2)------>ZmHOX2a(2)         <---- xxxxxxxxxxxxsmallRNA(fl3)   <---------MYB46(3)  --------->MYB59<-------GAMYB       --------->At4g35610 xxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------TOE2(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     ------   tctcctttctctgagttcgcgagctatgcggtcgatgttatcgttgataagtaggttctggttgcctgttgatcgagtttgcatacagcagaggtatacc  4441600                                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    --------->ANAC58         --------                                                                    --------->ANAC58         <-------                                                                 ------>ZmHOX2a(2)      ----------->GT1          <----------ID1     <---------MYB52(1)          --------->ARR11(3)    <---------GLK1(1) <------ZmHOX2a(2)      --------->ANAC46       <------------CBF<---------ARR11(3) --------->TOE2(3) -----LBD16    --------->ANAC58           ----------->GT1<---------ARR11(3)    --------->GLK1(1) ----->RAV1(2) --------->ANAC58       ---------->DOF2---------->DOF2--------->ANAC46  <xxxxxxxxxxxxxx   tggatcaagaagacaacaagaaaaacacacagttagtacttgaagcgaaaattgaaaaagaacttgatctaagcaagtctgaaatctcaaatgtaacaaa  4441700                                                                 --------->YAB1                                                                 <---------ICU4                                                     ------>ZmHOX2a(1)                                                    --------->TOE2(3)                                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  <---------YAB1<---------ATHB12                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                --------->YAB1--------->WOX13(1)                                               <---------ATHB12------>MYB83                  --------->DEAR3(1)           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 --------->RAP2.3(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <---------ATERF1(1)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                ------->GAMYB                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <---------RAP2.3(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ANAC58          <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->ANAC58 <------NtERF2           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ANAC46------>NtERF2            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <----------DOF2 ->MYB46(3)    <---------DEAR3(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------ARR11(3) --MYB52(2)  --------->MYB52(1)  <-------TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->ARR11(3) xxxxxxxxxsmallRNA(se3)     <---------TOE2(3)--------->WOX13(1)------>MYB46(1)      --------->MYB59   caaacacccaattagcaacggcgccaaattgatgatacatttttagtcaattatcctaaaacaccaatcatggcattgtagtattttaggtctttaatcc  4441800                           --------->WOX13(1)                   --------->YAB1                  <---------ATHB12                 --------->ANAC58                                                     ------>ZmHOX2a(1)                 --------->ANAC58                                                     <xxxxxxxxxxxxxx                --------->WOX13(1)                                           >>>>>>>ZML2             --------->ANAC58 --------->YAB1        --------->ANAC58         --------->HSFC1(1)     -             --------->ANAC58<---------ATHB12  --------->ANAC58              --------->HSFB2a(2)    -           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->ANAC58         <---------HSFB2a(2)    -         <---------YAB1  <-------TEIL          --------->ANAC58              <---------HSFC1(1) -----       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->WRKY18(1)         --------->ALFIN1<xxxxxxxxxxxx   aaatgagtgtgatgctagcaatcaagatgcaatcagagttcaaagagtcaagcccagcaataacaggtttaggggtgttctagaagtcctaagtgaacat  4441900               --------->ANAC58               --------->ANAC46 <------ZmHOX2a(1) xxsmallRNA(i) --------->AtLEC2 -------->ANAC46 -------->ANAC58        --------->At5g28300                                          <---------WRKY18(1) -------->ANAC58       ----------->GT1                                     --------->WOX13(1) ---->AtLEC2   --------->ANAC58         <----------DOF2           --------->YAB1<---------TOE2(3) xxxxsmallRNA(i) --------->YAB1  <<<<<<<<<TAC1                   <---------YAB1 <---------YAB1     --   gcaggaaacagaaattcaagcaaaacagtaaaaacactcgagctttcgatgttctcacaatagacttatgatgttttcaattaagcttgaccaatagatt  4442000                                                                                                  ---                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                       --------->ATHB12                                                                                      <---------YAB1                        --------->AHL20(2)                                          <---------At4g35610                        --------->YAB1                                       <---------O2       <----                  --------->ANAC58          <---------At4g35610       --------->ARR14(2)        -----                  --------->ANAC58          --------->At4g35610       <---------ARR14(2) <---------YAB1                ---------->DOF2        --------->WOX13(1)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           ---------->DOF2         ----------->GT1 ---------->DOF2<---------TOE2(3)<-------TEIL ----- ------->AHL20(2)--------->DAG2   <---------ARR11(3)             <---------ANAC46 <--------P    <----   ataaaataagaaataaagaaaagcaataaaaatcaagatgtaaatcagatgagaaaagagtcaagtttagggtattctcacgaggtagatgattagtaga  4442100  Previous    Next  AGI:  At4g07660.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 6.9e-240 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 4436758    to: 4441584    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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