Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   ---------->DOF2                                                                              <---------At4g35610                                                                       <---------ANAC58                                                                       <---------ANAC58                                                                      <-------TEIL                                     <---------TOE2(3)               --------->GLK1(2)                                     <---------TOE1(3)               <---------ARR14(2)                   ----------->GT1 ---------->DOF2                   --------->ARR14(2)         -----          ---------->DOF2   <---------ARR11(3)                       --------->ARR11(3)    ----------       --------->At4g35610  --------->ARR11(3)            ---------->DOF2     --------->At4g35610       <---------At4g35610  --------->GLK1(2)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxx      --------->ANAC58     --------->RVE1(1)         ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ANAC58   --------->AHL20(2)      ----------->GT1  <---------TOE2(3)       xxxxxxxxxxx   ggggaagtaagctaaagaagttagaaaaaaaatctagtaaaggttttgggaatgttaaagaaaagaatgaggttcttgttagctaaagaagaagggttaa  3022300                                           ---------->DOF2     xxxxxxxxxxxxxxxx>smallRNA(i)                                       <---------MYB46(3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    --------->MYB52(2)    --------->ANAC58            <---------GLK1(2)   <---------MYB52(1)            --------->TOE2(3)        --------->ANAC58           <---------HSFC1(2)  <----------DOF2                --------->TOE1(3)        --------->ANAC46           --------->HSFC1(2) ----->DOF2                     <---------HSFB2a(1)    --------->ARR14(2)   <-------GAMYB ->GT1     ---------->DOF2    <---------ARR14(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxx>smallRNA(fl3) --------->ARR14(2)<---------GLK1(1)   ------->TEIL  ---------->DOF2 xxxxxxxxxxxx>smallRNA(se3)  <------ZmHOX2a(1)  --------->GLK1(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   aagcctttggttttaaagaaaaaaaaaaacaggaaccttagttgttaaagaaatccaaacccgctagatgtatcagagcgttgagaaagcttctccttga  3022400                                                  --------->ZAT18                                                  <---------ZAT14                                              --------->ATHB12                                             <---------YAB1               <XXXXXXXXXXXXXXXXXXXXMIR773B                    --------->CCA1(2)      --------->YAB1    <---------ZAT6                  --------->YAB1          <-------TEIL       ----------->GT1           ---------->DOF2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <----------ID1      ---------->DOF2     ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------YAB1   gttaagagaaaagaaaagaatgatatgaaaaagagtttgaaagattcatgagtgcaaagggtagagttaagttgggacaagagttgggattaccattaga  3022500                                                            <----------DOF2                      <---                                                      xxxxxxxxxxxxxxxx>smallRNA(s)               ----                                  <----------DOF2     <xxxxxxxxxxxxxxxxsmallRNA(i)               <---                                <---------YAB1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxx                           <------ZmHOX2a(2)         xxxxxxxxxxxxxxxx>smallRNA(i)               -----                          --------->ARR11(3)    --------->TOE1(2)                   -------->ATHB1                          <---------ARR11(3)    --------->TOE2(2)                   <---------ICU4                          --------->ARR14(2)    <---------LBD16                     --------->YAB1---                  <--------P  <---------CCA1(2)----------->RAV1(2)                 <---------ATHB12             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------YAB1<             <---------LBD16------>ZmHOX2a(2)<---------ARR14(2)                  --------->WOX13(1) -      <---------YAB1      <---------ARR14(2) --------->ARR14(2)           ---------->DOF2       <----      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)--------->YAB1 -------->P      --------->AtMYB61     xxxxxx   acttcattgttatactctgggtagatgggatcttatctttgtatgcataacctgggacttacctttagcattctaccaaagctcaatcattcttgaggga  3022600                                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ANAC55(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <---------ANAC55(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------MYB52(1)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <-----------HVH21          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------DAG2 ------GLK1(1)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----->GLK1(1)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---ZmHOX2a(2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  - xxxxxxxxxxxxxxxxxx>smallRNA(se3)                    --------->TOE1(3)                             <- ---->ARR14(2)               <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    -- --->ZmHOX2a(2)       <---------MYB52(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)       <---------WOX13(1) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------WRKY18(1)                      <---------ANAC58 ---------->RAV1(2) <---------YAB1      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->ZAT18     <- -----ARR14(2)  <---------ARR14(2)<----------DOF2 <---------ALFIN1       --------->YAB1     <-------- xxxxxxxxxx>smallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <-------TEIL *TSS<---------ANAC58   tcccctgttacttaagcctattctgttagggaccatctttgtctcttgaccttcaccttagccaaatgagttcattcatgatgcactgcttgattcacat  3022700                                               <------MYB83                                               <------MYB46(1)                                              <---------AtMYB61                                   ---------->DOF2                              <---------ARR14(2)    <---------ANAC46           ------->TEIL    <--------P      --------->ALFIN1        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->MYB59                   --------->ANAC46        <---------YAB1   ----------->GT1  <-------MYC3                   --------->YAB1    <---------TOE1(3) -------->LBD16 ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------WOX13(1)  <---------TOE2(3) --------HSFB2a(2)       <------MYB46(1)  <-------MYC2               --------->ATHB12     --------->MYB52(1) ------->HSFB2a(2)       <------MYB83   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ANAC58 --------HSFC1(1)      <---------WOX13(1) ------->MYC2             <---------WOX13(1)   <---------MYB52(2) ---GT1 <---------ATHB12<---------AtMYB61 ------->MYC3       --------->CCA1(2)  --------->ANAC58   tccagaactaatgaatgttaaagggattggtagatttgaaagcatgtgtaggtcgagtataagagacggattgattgataacaaggcatgactaacgttt  3022800                                                                                        ------>NtERF2                                                                                       <---------ALFIN1                                                                                       --------->DEAR3(1)                                                                                       --------->ANAC46                                                                                      <------NtERF2                                                                                      --------->ATERF1(1)                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                         <---------AtMYB61 <---------                                        <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    ------>MYB46(1)                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                    -------->P                    xxxxxxxxxxxxxxxx>smallRNA(i)               <---------CCA1(2)    ------>MYB83                --------->YAB1       <---------ATERF1(1)             --------->YAB1       <---------MYB111(2)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <-------            <---------ATHB12      <---------MYB111(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------          --------->WOX13(1)    -------->P         <---------AHL20(2)  <----------DOF2<---------LBD16     --------->ICU4         --------->ZAT6         --------->AHL20(2)xxxxxxxxxxxxxxxx>smallRNA(i)  --   ttgagtaatattcaatcatatcgcatcttaaaactaccaacttggacattgattttatttgctctatcatatgctttggttctgagtccccgccttcact  3022900                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                       ---------->DOF2                                    --------->ANAC58    ------>ZmHOX2a(1)               --------->ANAC58                          <---------ANAC58      <   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                      <---------AtLEC2     <- --HVH21                   <----------DOF2                                    <---------ANAC58   ---- --ALFIN1                 <---------ANAC46                        <---------ARR11(3)            <xxxx --->ANAC46               <---------ANAC58                        --------->ARR11(3)           <xxxxx ---->ZmHOX2a(1)          <---------ANAC58     <---------TOE2(3) <---------CCA1(2)            <xxxxxx   cctctccttcaactatgtcttcttatttgcttgagggcaagcaaagactaagtttgggagagttgatatatctataatttgcatgttttcaatgtccatt  3023000                          --------->WOX13(1)                        <---------YAB1                                            <xxxxxxxxxxxxxxxxxx                       <---------ARR11(1)                                        <------ZmHOX2a(1)                      <---------CCA1(2)                                          xxxxxxxxxxxxxxxxxxxx                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       <---------YAB1                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   --------->ATHB12                    --------->ANAC55(2)                                   --------->ICU4                    <---------ANAC58                                      <---------YAB1                    <---------ANAC55(2)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------ANAC46                                    <---------AtLEC2 ---------ICU4      <---------ANAC58                                    <-----------------AG --------YAB1     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->AtLEC2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ----->YAB1  <---------ZAT14 --------->YAB1               <---------ICU4<---------ANAC58 xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <---------YAB1 <---------ANAC58 xxxxxxxxxxxxxxxxxxsmallRNA(se3)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <------ xxxxxxxxxxxxxxxxxsmallRNA(se3)                     --------->YAB1  <----------DOF2    <----------DOF2   catcatcgttttgagtccagtttcgtatcattcatcactgttttatatcatttctcatcatccttgcatactttgcatgattaggatagctttgcataca  3023100                                                                                                    x                                                                                                   xx                                                                                                   <x                                                                                                  xxx                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)           xxxxxxx                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <xxxxxx                                <---------At4g35610                                           xxxxxxx                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               xxxxxxx     <---------ARR14(2)  xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  <--------    <---------GLK1(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              --------->ZAT2   <----------DOF2      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 <---------ZAT2  <XXXXXXXXXXXXXXXXXXXXXXXMIR163--------->At4g35610     --------->CCA1(2)                <-----------RAV1(2) xxxxxsmallRNA(s2)   <---------At4g35610  --------->ANAC58                               <---------ALFIN1 x>smallRNA(s2)      --------->At4g35610  --------->ANAC58  --------->ANAC58            xxxxxxxxxxxxx -TEIL             <-----------RAV1(2)    --------->ANAC46  --------->ANAC58         xxxxxxxxxxxxxxxx   tattgcatttctgagtttttttcaggtgatttggagctgtttgcaagcaaattggaagaaacgagccagaacaagaagacatactcgacccccaggtcga  3023200  Previous    Next  AGI:  At4g05640.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G41855.1) Range:  from: 3022681    to: 3023682    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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