Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <---------AHL20(2)               ----------->GT1<-----------GT1                     --------->GLK1(2)              --------------->AtSPL8                              <---------ARR14(2)              <---------------AtSPL8                     <---------YAB1          <---------YAB1  <---------AHL20(2)          <---------AHL20(2)        --------->YAB1  --------->AHL20(2)           --------->AHL20(2)                             -     --------->ANAC46   <---------AHL20(2)     <-----------GT1    --------->ARR14(2)      <----------   tttctatacatcataaatagtacaatataaatttacttacaaacattttttactattttataaatacaaatctgattttaaaaattcaaactatgttgta  2816000                                           --------->GLK1(2)                                          <---------GLK1(2)                                       --------->YAB1                                    <---------ICU4                                    --------->YAB1                                   <---------AHL20(2)                                   <---------YAB1                                <---------AHL20(2)                           --------->AHL20(2)                           <---------AHL20(2)                  <---------AHL20(1)                           --------->AHL20(1)                  --------->AHL20(1)       --------->MYB52(1)  <---------AHL20(1)                 --------->AHL20(2) ---------->GT1           --------->AHL20(2)                --------->AHL20(2)       ----------->GT1 -RAV1(1)      --------->ICU4  --------->AHL20(2) <---------AHL20(2)             xxxxxxxxxxxxxxxxxxxx   tgtagaaaaaaacagaaatttttatctaataaattttataattagaatctattttttggaaaaaatatataacaaaaacatacaaataggtgaaaactaa  2816100                                                        ------>MYB83                    ------->TEIL                --------->At4g35610                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <-----------GT1                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                -------->P               --------->AHL20(2)   --------->ALFIN1                --------->ANAC46 <-----------GT1             <---------AHL20(2)   ----------->GT1           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   <---------ZAT6xxxxxxxxxxxxxxxx>smallRNA(s)   <----------DOF2           --------->TOE2(3) xxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)------>MYB46(1) <---------AHL20(2)    -------   atgaagtgttactaaatcatctctcatcaactattccacaccaaaattgtctttttccaacccttatatgctattttcttaatttatatgtatatgatgt  2816200                ----------------->AGL3                <-----------------AGL1 --------->WRKY38(1)      <---------ARR14(2)              <----           <---------TOE2(3)           --------->WRKY12     <---------LBD16                     <----    <---------------AGL15 <---------ANAC58               ------>ZmHOX2a(1)                   <-------    --------------->AGL15 <---------ANAC58          --------->GLK1(1)                      --------->YAB1    ==============================MADS_MADS         <---------GLK1(1)---------->ID1     <xxxxxxxxxxxx   --------->TOE2(3)<xxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ARR14(2)          --------->DOF5.7(2) ---->GT1<---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->ARR14(2)   --------->TOE2(3)   tatattcttaattaagttatcaaatatggctagttttgcaattgacccaaatagaaatcctctctggatttgtctctccaaacgttaccacaatattact  2816300                    <----------DOF2                --------->ANAC58                      --------->AHL20(2)         <----------DOF2                --------->ANAC46                ------->GAMYB                ------->GAMYB                --------->ANAC58               <---------MYB52(2)          <---------At4g35610     <---------KAN4(2)                        <---------At4g35610      --------->ANAC58 ------DOF2     ------->GAMYB                 --------->At4g35610      --------->ANAC58 -----DAG2--------->TOE2(3)               --------->ANAC58             --------->ANAC46  *TSS ----GT1  --------->TOE1(3)               --------->ANAC58  <-----------GT1--------->At4g35610 xxxxxxxxsmallRNA(fl3)  <----------DOF2   --------->ANAC46<---------AHL20(2)<---------MYB52(2)    ---   tttttggaataacctcaaacgcctttcttttctaaactcttcaaacgcaactcacattatttaaacgcttcaaacgcaactcactttcatcgcttagaga  2816400                              ------------------------>ANAC81                    --------->ATHB51                    --------->ATHB12                    <---------ICU4                    <------------ATHB5                    <--------ATHB1                    --------->YAB1                    -------->ATHB1                   <---------YAB1                                            --------->ATHB12                   <---------ATHB12          ---------->DOF2         --------->MYB52(1)       --------->MYB46(3)     --------->ANAC58                       -------->P    <----------ID1 --------->ICU4 ---------->DOF2                 <---------HSFC1(2)    ---------->DOF2  <---------------AtSPL8      --------->ANAC58                    --------->HSFC1(2) --------->ANAC58 ------->DOF2    --------->WOX13(1) ----------->GT1               --------->At4g35610--------->ANAC58   gaaagaagaacaaacaaaacaatcattggaagaagcaaaagaaaaaaaaaagattgaaatggagaagaagctaccgagaagattggaaggcaaagtcgcg  2816500                                                                                  --------->LBD16                                                                                 --------->ANAC58                --------->MYB52(1)                                               --------->LBD16             --------->ANAC58                                                    --------->ANAC46             --------->ANAC58                                         <------NtERF2             --------->ANAC46                                       <---------DEAR3(1)     ------>NtERF2                                           --------->ATERF1(1) --------->ANAC58    <---------ANAC46        <---------LBD16             <---------DEAR3(1)      --------->HSFB2a(2)    <---------RAP2.6(2) <------MYB83                <---------HSFB2a(2)   <-----------ARR10   --------->RAP2.6(3)  <------MYB46(1)             --------->HSFB2a(2)  <---------CCA1(2)    <------ ----------->HVH21     <---------AtMYB61   <----------DOF2  <---------ATERF1(1) <---------LBD16   attgtgacggcttcgacgcaagggattggtttcggaatcactgagcgtttcggtctcgaaggcgcttccgtcgtcgtctcttcccgcaaacaggtttcac  2816600                                                                      <----------DOF2                                                                     ------>ZmHOX2a(2)                                                                    <------ZmHOX2a(2)               <                             <---------AHL20(2)                    <---------ARR14(2)               <                    <---------ARR14(2)                             --------->ARR14(2)           <----                    --------->ARR14(2)          --------->GLK1(2)  --------->ARR11(3)     <------MYB83                  --------->LBD16          ---------->DOF2   --------->ATHB12             <------MYB46(1)       <----------DOF2      --------->AHL20(2) <---------GLK1(2)   <---------ARR11(3)    --------->MYB59 -----GT1   <---------At4g35610        ------->TEIL         <---------ZAT6           --------->ATHB12   catctctcactttcatcttccgaatttgaattaaaacgatgaaactaaagaatcgttttctagtgatgggatctttgtatttgtgcttcattaggtttct  2816700                                                            <---------ATHB12                                                          --------->YAB1      --------->LBD16                                     --------->WOX13(1)     <---------ANAC46                             --------->AHL20(2)           ------>ZmHOX2a(2)   --------->SPL7                                 --------->YAB1     <---------ANAC46 <---------SPL7            <---------ARR14(2)    <---------ATHB51  <---------ZAT14 ---------ANAC58           --------->ARR14(2)<-------TEIL--------->MYB46(3)<---------YAB1         --- ---------ANAC58       <---------LBD16    --------->At4g35610      --------->ZAT14           <------- ------DOF2       <---------YAB1          <---------At4g35610 <---------At5g28300            --------   tttcgtaccgcgaattgttgataattctggatttgatttgttacagatgcaattatacaacaatcactgtgaagtgtatgatcgcaattttcaaagattt  2816800                                       <---------AHL20(2)                                      --------->AHL20(2)      <----------DOF2               --------->YAB1     ---------->DOF2           <----------DOF2    < ------->DOF2               --------->ETT(2)      --------->At4g35610   <------ZmHOX2a(1)         <-- --ARR11(3)        <---------MYB52(1) <---------AHL20(2)            ------>ZmHOX2a(1)             <-- ->ARR11(3)  <----------DOF2<---------ETT(2)      <---------At4g35610 <---------TOE2(3)        <-----   taaaggaactttgctctttctgtttttttgtcgaccgatattaattagattaagctcaaaagagtcattcctaaggaattgaactttactcttattttcg  2816900  Previous    Next  AGI:  At4g05530.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23245.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 2816389    to: 2818362    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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