Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->ARR11(3)                                                                                     <---------ARR11(3)                                                                                   <---------AHL20(2)              <---------YAB1                                                 --------->AHL20(2)            <---------AHL20(2)                                             --------->AHL20(2)            --------->AHL20(2)                                             --------->AHL20(1)     xxxxxxxxxxxxxxxxx>smallRNA(le3)                                      --------->YAB1<---------YAB1   <-----------RAV1(1)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   --------->ICU4                                              <<<<<<<<<WRKY18    --------->AHL20(2)   ttgtaatgttgtatttatttttgtagattgttttaatccgcttcttgctaatctctgtatttctgtcaaaaatcaaaaataatataaaatctaattgtct  2471600                                                                    >>>>>>>>>GATA-1                                                                  ----------->GT1                                                            --------->YAB1               --------->YAB1                          <----------DOF2                           ----          <---------ATHB12                             <---------DAG2                 --------->AHL20(2)      --------->AHL20(2)          --------->YAB1 <-------TEIL <---------YAB1--------->At4g35610 -----   accaaaaaaaaaatcattcatagtccatgagtagaatcaaaacaagatagattcaaactttatcaagatagataaataagctaagaaatgaaatagttcc  2471700                                              --------->MYB52(1)                                          --------------->AGL15                                          <---------------AGL15                                          ===========================================================                                         ----------------->AGL1              <---------WOX13(1)                                        ----------------->AGL3             --------->ATHB12                                        <-----------------AG              <---------AHL20(2)                                        <-----------------AGL1            --------->AHL20(2)                              <---------ARR11(3)                         <---------WOX13(1)   -------                <-----------------AGL1  ============================================================= -->ZmHOX2a(1)<-----------HVH21<------ZmHOX2a(2)                    <---------O2    --------->bZIP60(1) ---->TOE2(3)<---------ZAT6   --------->ARR11(3)   ---------->DOF2  --------->O2    <---------bZIP60(1)   tcaaaactaaatttagtgtcaccaagaggcaagatcaaacttttcaaataagggaaagaagagaattgcaacgtgattaattgatgaggtcatagtaaaa  2471800                                   --------->ATHB12                                   >>>>>>>>>>AGL20                                   <--------ATHB1                                   -------->ATHB1                                   --------->ATHB51                                   >>>>>>>>>>AGL24                                   <---------ICU4                                   --------->YAB1                                   >>>>>>>>>>AGL22                                  <---------ATHB51                                  <---------ATHB12                                  --------->ICU4                                  <---------YAB1    <---------ARR11(3)         <-----------------AGL3                                      --------->DAG2    --------->ARR11(3) ----------->GT1                                                 <---------AtLEC2    --------->GLK1(2) ----------->GT1                  --------->ZAT6<----------ID1--------->CCA1(2) ================================================MADS_MADS         <---------------AtSPL8 ---------->DOF2 --->DOF2          --------->MYB52(1)      <---------REM1(1)      --------->DAG2  --------->ARR14(2)- ================================================MADS_MADS       ---------->DOF2----------->ARR10<---   gtcaaaaatctgtgtgactcaaaacgggtaaaaacaataattgggatgtagttgataactctaaaaaaaaagggacaaaaatgagatttgcataaagtag  2471900                              --------->ZAT14                           ------>ZmHOX2a(1)                                                  <------                       --------->ARR14(2)                                                   <--------                       <---------ARR11(3)                                                   <--------                       <---------ARR14(2)                     ------>ZmHOX2a(2)            <------NtERF2      <------------CBF --------->ARR11(3)               <---------DOF5.7(2)              --------->ALFIN1 <-------TEIL         --------->RVE1(1)               --------->DOF5.7(2)                <---------DEAR3(1) -------->CCA1(2)   --------->AHL20(2)                <---------MYB52(1)         <---------ALFIN1 --- ------ZAT6  ----------->GT1  <---------ZAT14        <-------GAMYB    *TSS       --------->ANAC46 <--   agatacaaaattgagaagaaaaaaaaatcctcttcactaaaaaaaaaaaaacttccgttatcgatctctatctctctcttcccccacaagggtggcgatt  2472000                                                      --------->ZAT6                                                      <-----------GT1                                                     <---------YAB1                                                    <-----------GT1   --------->HSFC1(2)                              --------->YAB1   <---------HSFB2a(1)                             <---------ICU4   <---------HSFC1(2)                           <---------ICU4   --------->HSFB2a(1)                          --------->YAB1                                  ----- <------ZmHOX2a(1)                        ------>NtERF2                                        ------ ---ARR14(2)                           --------->At4g35610               <---------LBD16    --------- -ANAC58                              <-----------RAV1(1)   <---------ZAT14                 <-------- -ANAC58<---------AtLEC2          <----------DOF2 --------->ICU4    <---------AHL20(2)      <-------- ------>HSFB2a(2)          <---------STY1(1)   <---------ATHB12<---------YAB1               --------- -------HSFB2a(2)     --------->GLK1(1)<---------At4g35610  --------->ZAT14               -----------   cgaggagtttccatggtggaacagaaaccctagagcctttatgctgccactaattatcactcttcactattgaattggggatggactcagagaaaatcct  2472100                                                                             --------->RRTF1(3)                                                                             --------->DEAR3(1)                                                                             --------->RAP2.3(3)                                                                             --------->RAP2.3(2)                                                                            --------->RRTF1(1)                                                                           --------->ABI4(1)                                                                          <---------ALFIN1                                                                          ------->GAMYB                                                                          --------->DREB2C(2)                                                                         --------->MYB46(3)                                                                         <------NtERF2                                                                         --------->ATERF1(1)                                                                         --------->DEAR3(2)                                                                         --------->DEAR4(2)                                                                        ------>NtERF2                                                                        --------->ABI4(1)                                                                       --------->DEAR3(1)                                                                       <---------ALFIN1                                                                      --------->ATERF1(1)                                                                     <---------ATERF1(1)                                                                     <-----------HVH21                                                                     --------->ABI4(1)                                                                     ------>NtERF2                                                                    --------->RRTF1(2)                                                                    --------->RAP2.6(2)                                                                    --------->DREB2C(2)                                                                    --------->RAP2.3(3)                                                                    --------->RAP2.3(2)                                                                    --------->RRTF1(3)                                                                    --------->ATERF1(2)                                                                    <---------ATERF1(2)                                                                    --------->ANAC58                                                                    --------->DEAR3(1)                                                                    --------->ANAC46                                                                    --------->ANAC58                                                                   --------->ATERF1(1)                                                                   --------->RRTF1(1)                                                                   --------->DEAR4(2)                                                                   --------->ERF1                                                                   --------->RAP2.3(1)                                                                   --------->RAP2.6(1)                                                                   --------->ORA47(2)                                  ---------->DOF2                 <---------ATERF1(1)                                --------->LBD16                 --------->MYB46(3)                               --------->ANAC58                 --------->DEAR3(2)                               --------->RRTF1(2)             <---------ARR14(2)                               --------->RAP2.6(2)            --------->ARR14(2)<---------MYB46(3)                               --------->RAP2.3(2)        <------NtERF2--------->AtMYB61                               --------->ANAC58          ------>NtERF2<---------ABI4(2)                              --------->RAP2.3(1)        --------->At4g35610--------->RAP2.3(1)                             --------->At4g35610         <---------At4g35610--------->ERF1                             ------>MYB83                --------->LBD16<---------ATERF1(1)                             --------->ZAT2             ----------->RAV1(1)------>NtERF2                             ------>MYB46(1)           <---------RAP2.6(2)--------->DEAR3(1)                            --------->ANAC46           <---------LBD16--------->MYB46(3) ->ZmHOX2a(1)               --------->MYB55(1)     --------->At4g35610<------NtERF2 --->TOE2(3)               <---------ALFIN1        <---------At4g35610--------->ERF1 >ARR11(3)                 --------->MYB46(3)  <---------MYB52(1)--------->DEAR3(1) -ARR11(3)                 <-----------RAV1(2)<---------At4g35610--------->ANAC46<-------GAMYB -ARR14(2)                 <---------MYB55(2) --------->At4g35610------->GAMYB------>NtERF2 >ARR14(2)                --------->At4g35610 <-------GAMYB  <---------ARR14(2)<------NtERF2     ---- >ARR10        --------------->AGL15         <---------MYB46(3) <------------AtMYB77        ---------   caatccaagacttgtttcgattaatagcaccagccgcaaaggtatgtccgttgagttgccgcagaaaccgccgccaccgccgtcgttgttagaccggttt  2472200                                    <---------MYB46(3)                                   --------->ALFIN1                                 <---------MYB46(3)                                 --------->MYB55(2)                                <---------AtMYB61                                --------->ALFIN1                              <------MYB83                              <------MYB46(1)                              <---------ANAC46--------->ARR14(2)                             --------->MYB46(2)                                         <--------P      <---------ANAC58       <---------DEAR3(1)         --------->LBD16              <---------TOE2(3)      <---------ANAC58      <---------ZAT14   <---------ARR14(2)               <----------DOF2  <----  <----------DOF2   --------->ICU4 <---------ANAC46<---------ANAC58            <---------DAG2 <------ ------>DOF2      --------->REM1(2)<---------AtMYB61 ------>NtERF2           <---------At4g35610<---- -->GT1        <---------ANAC46 <---------DEAR3(1) <---------ANAC58          --------->At4g35610<----   aaagctttgcttaatcagcgtgaagatgagttcggtggtggtgaagaggttttgcctccgagtatggatgagattgttcagctttatgaggttgttttgg  2472300       <----------DOF2 --------->At4g35610 <---------At4g35610               ------>ZmHOX2a(2) -----ANAC58                    --------->ZAT14 ---ANAC46                  --------->ZAT6                            <---------REM1(1) -----ANAC46               <---------YAB1  --------->YAB1   ------->GAMYB   --------->ARR14(2) -----ANAC58             --------->YAB1   <---------YAB1 --------->MYB52(1) <---------GLK1(2)   gtgagcttactttcaattctaagcctattatcactgatctcactattatcgctggtgaacaacgggaacatggtgaaggaatcgctaatgctatttgcac  2472400                                                                                                <----                                                                                       <------MYB46(1)                                                                                       <------MYB83                                                                                      --------->MYB59                                                                                      <---------TOE2(3)                <----------DOF2                                                  --------->AHL20(2)               <---------ANAC58                                                  --------->AHL20(1)               <---------ANAC58                                                  <---------AHL20(2)        <---------TOE1(3)                    --------->TOE2(3)                  --------->AHL20(2)<--        <---------TOE2(3)            <----------DOF2                       ----------->GT1     >>>>>> --------->ARR14(2)            <-----------GT1                            ----------->GT1     ------- <---------ARR14(2)<------------------------ANAC81                       --------->ALFIN1    <-------   tcgaatccttgaggtttgctttcttcttatttgtttccactttctagccttattgtatagtatgtaagtgtagaagtgggaaaaaaattaggtttttgat  2472500  Previous    Next  AGI:  At4g04885.1    Description:  pre-mRNA cleavage complex-related. similar to S-locus protein-related [Arabidopsis thaliana] (TAIR:AT5G43620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69677.1); contains InterPro domain ENTH/VHS (InterPro:IPR008942); contains InterPro domain Regulation of nuclear pre-mRNA protein (InterPro:IPR006569) Range:  from: 2471970    to: 2475979    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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