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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ATHB12
--------->
WOX13(1)
<---------
ZAT18
<-----------
GT1
<---------
RVE1(1)
<---------
MYB52(1)
-----
<------
ZmHOX2a(1)
------->
TEIL
<---------
GLK1(1)
--------->
ALFIN1
--------->
ICU4
--------->
GLK1(1)
<---------
At4g35610
---------->
DOF2
------>
GT1
--------->
ZAT18
<---------
GLK1(1)
--------->
At4g35610
<---------
YAB1
gaaattaggattttttgcactatttgatagtctgatttctcttctccatgaactctcagttgatttcccatctcaatcaacttggtcatgaaagtgttga
2288000
<---------
TGA1a
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
===================================
=====================
HOX2a_HOX2a
------>
ZmHOX2a(1)
<---------
ICU4
--------->
YAB1
<----------
DOF2
<---------
YAB1
-
<----------
DOF2
<---------
DAG2
------>
ZmHOX2a(2)
<
<-----------
GT1
<---------
YAB1
=======================
bZIP_DOF
<-
---->
ARR11(3)
<---------
GLK1(2)
<----------
DOF2
<---------
YAB1
<-
tattgtcactttctttcatcttcaaattctcatactcccttctaagagattgaagctttatcatcctgacttgtggtgatccttgaaattccaataccaa
2288100
<---------
TOE1(3)
<---------
TOE2(3)
<----------
DOF2
------>
ZmHOX2a(2)
===============
HOX2a_HOX2a
<------
ZmHOX2a(2)
================
HOX2a_HOX2a
<---------
HSFB2a(2)
--------->
ARR14(2)
--------->
HSFB2a(2)
<------
NtERF2
--------->
ARR11(3)
<----------
DOF2
<---------
LBD16
--------->
ANAC58
<---------
ARR11(3)
<---------
ZAT18
--------->
GLK1(2)
--------->
ANAC58
--------->
AGP1
<---------
ZAT14
--------->
ARR14(2)
--------->
RAP2.6(3)
----------->
ARR10
--------->
ZAT14
<---------
GLK1(2)
--------->
At4g35610
--------->
MYB59
--------->
ZAT18
<---------
ARR14(2)
<---------
At4g35610
<---------
MYB52(1)
==========
bZIP_DOF
----------->
ARR10
--------->
GLK1(2)
<-----------
HVH21
-------->
GLK1(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
----------->
GT1
<------
ZmHOX2a(1)
----------
DOF2
<-------
PIF5
<---------
GLK1(2)
--------->
GLK1(2)
<---------
ARR14(2)
--------
ANAC58
------->
PIF5
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
MYB46(3)
<----
--------
ANAC58
<-----------
RAV1(2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
---------->
DOF2
------>
ZmHOX2a(1)
ggctttccaagtgcgcttgatgcaggggcgattctcggaaatatggaatctgagacggcagtttgaagaatttgcaaagcggttagatcctttaaggatg
2288200
<------
MYB46(1)
<------
MYB83
<---------
MYB46(3)
<---------
AtMYB61
--------->
ALFIN1
<---------
MYB46(3)
--------->
LBD16
--------->
MYB55(2)
<---------
ANAC46
<---------
LBD16
===================================
HOX2a_HOX2a
------>
ZmHOX2a(2)
<-----------
HVH21
<-----------
RAV1(1)
<
<----------
DOF2
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
<-----
--------->
ZAT18
<---------
GLK1(1)
--------->
GLK1(1)
<-----
<-----------
RAV1(1)
--------->
GLK1(1)
<---------
GLK1(1)
------
<----------
DOF2
--------->
ARR11(3)
<---------
HSFB2a(2)
<------
<-----------
HVH21
---------->
ID1
<---------
ARR11(3)
--------->
HSFB2a(2)
<---------
GLK1(2)
-----
At4g35610
<---------
MYB46(3)
--------->
YAB1
<---------
MYB52(1)
----------->
RAV1(1)
ctgcttcacatcgtgtcttttgttgcactgcttcagggctatgatctccttctgcgggtggttttggaactccttcgtcaacaatttcccacagtttctt
2288300
<---------
ICU4
--------->
ICU4
<---------
YAB1
--------->
TOE2(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
----------->
GT1
--------->
YAB1
<---------
HSFB2a(2)
--------->
TOE1(3)
*
TSS
--------->
HSFB2a(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
AtMYB61
---------
LBD16
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
bZIP60(1)
-----
DOF2
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
--------->
bZIP60(1)
----------
AGL15
--------->
ANAC58
--------->
ATHB12
----------->
HVH21
--------->
AGL15
<----------
ID1
<---------
YAB1
<-----------
HVH21
-----------
AGL1
--------->
ANAC58
<----------
DOF2
--------->
ALFIN1
<-----
tgtctggaaaattgttttcatcttgatgcgccaaaaaccataattctctttgttgaagattggagtcacaatgtgtgacaccat
ctccataactctctcg
2288400
--------->
ATHB12
<---------
ANAC58
<---------
ANAC58
<-----------
GT1
--------->
ICU4
----------->
GT1
----
ANAC46
<----------
DOF2
--------->
ZAT18
<------------
CBF
---------->
DOF2
tgtttattaaactctttacttgaaatgtttggcccttgaatcagtagggctctgataccatgttggaaattgaagcctcttgttacaaagaaaaaacaag
2288500
<-
------
---------->
DOF2
--------->
ANAC58
---------->
DOF2
--------->
ATHB12
--------->
MYB52(2)
-------
--------->
ANAC46
<---------
YAB1
<xxxxxxxxxxxxxxxx
smallRNA(i)
-----
<---------
ANAC58
--------->
ANAC58
<----------
DOF2
<---------
ARR11(3)
<---------
YAB1
--
<---------
ANAC58
--------->
ANAC58
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
ANAC46
<---------
ANAC58
<-------
TEIL
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
--------
<---------
ANAC58
--------->
CCA1(2)
--------->
GLK1(2)
--------->
ARR11(3)
--------->
ANAC58
tgtttacttgttgttctgtttcttatgagatacacaaagcaaaagagaaactgacttttattgaatggagaacttgttcgtttcatcacgatacaaaaag
2288600
--------->
TOE2(3)
<---------
MYB59
<---------
O2
--------->
ANAC46
--------->
O2
--------->
ANAC58
<-----------
GT1
--------->
ANAC58
--------->
ANAC46
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
--------
AHL20(2)
--------->
CCA1(2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
----->
GT1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
---------->
DOF2
<---
-->
DAG2
---------->
DOF2
<----------
DOF2
<----------
ID1
--------->
TOE2(3)
<-------
------>
GT1
<---------
ANAC55(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
ANAC58
------->
AHL20(2)
--------->
ANAC46
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
------>
MYB83
--------->
ANAC58
<
-->
DOF2
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
TOE2(3)
------>
MYB46(1)
--------
tttaaatagaaaacaaatagacacaataagtaaagagttgtgtctctttctctctaagataaacgacacaacctaatctaaaagtcacgactctaacaaa
2288700
xxxxx
xxxxxx
<xxxxx
xxxxxxx
xxxxxxxx
<--------
<xxxxxxxx
xxxxxxxxxxx
<xxxxxxxxxx
xxxxxxxxxxx
<xxxxxxxxxxxxx
<xxxxxxxxxxxxx
<xxxxxxxxxxxxx
<xxxxxxxxxxxxx
<xxxxxxxxxxxxxx
<xxxxxxxxxxxxxx
<xxxxxxxxxxxxxx
--------->
At4g35610
<---------
At4g35610
<xxxxxxxxxxxxxxxxxx
------>
ZmHOX2a(1)
xxxxxxxxxxxxx
<---------
MYB59
<xxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
At4g35610
<xxxxxxxxxxxxxxx
--------->
At4g35610
<xxxxxxxxxxxxxxxx
<---------
ZAT2
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
ZAT2
--------->
MYB46(3)
<---------
ICU4
--------->
ARR14(2)
<xxxxxxxxxxxxxxxxxxx
--------->
YAB1
<---------
GLK1(2)
<---------
ICU4
xxxxxxxxxxxxxxx
----------->
RAV1(1)
--------->
AHL20(2)
------->
TEIL
<xxxxxxxxxxxxxxxxxxx
--------->
AHL20(2)
--------->
YAB1
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<----------
DOF2
--------->
ICU4
<---------
ATHB51
<---------
REM1(1)
<xxxxxxxxxxxxxxxxxxxxxx
------
ALFIN1
<---------
ICU4
------>
MYB46(1)
<---------
ARR14(2)
<xxxxxxxxxxxxxxxxxxxxxx
-----
MYB.PH3(2)
<---------
YAB1
------>
MYB83
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxx
---------
DAG2
<---------
YAB1
<---------
MYB59
<---------
MYB52(2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
x
->
MYB46(3)
--------->
ICU4
--------->
AtMYB61
--------->
MYB52(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
caccttttaatacaacataattataacttatagaccaaactcaattataaactaacagatttgatgcagcttcctaatttccaacagctccatgatgttt
2288800
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<-------
GAMYB
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
At4g35610
--------->
At4g35610
<---------
ZAT2
--------->
ZAT2
xxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxx>
smallRNA(l2)
xxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxx>
smallRNA(se3)
-
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxx
smallRNA(se3)
xxxxxxxxx
smallRNA(fl3)
xxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxx
smallRNA(si3)
<-----
xxxxxxxxx
smallRNA(si3)
-------
xxxxxxxxx
smallRNA(i2)
<-------
xxxxxxxxx
smallRNA(fl3)
<-------
xxxx
smallRNA(si3)
--------->
AHL20(2)
<-------
xxx>
smallRNA(s)
<---------
ICU4
------>
ZmHOX2a(2)
xxxxxxx
smallRNA(fl3)
<---------
AHL20(2)
<--------
x
smallRNA(s)
--------->
ARR14(2)
--------->
AHL20(2)
<------
ZmHOX2a(2)
xxxx
smallRNA(s2)
--------->
GLK1(2)
--------->
YAB1
<---------------
AGL15
<---------
ARR14(2)
xxxx
smallRNA(le3)
--------->
YAB1
<-----------
GT1
--------->
TCP20
x>
smallRNA(s)
<---------
ARR14(2)
--------->
AHL20(2)
----------->
GT1
--------->
ARR14(2)
xxxx
smallRNA(si3)
------->
TEIL
<---------
AHL20(2)
<---------
AHL20(2)
----------->
GT1
--------
x
smallRNA(le3)
<---------
GLK1(2)
--------->
AHL20(2)
<---------
AHL20(1)
--------->
ARR14(2)
<-------
x
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
AHL20(2)
<-----------------
AGL3
--------->
ARR14(2)
xxxxxxxxxxxx
smallRNA(si3)
--------->
AHL20(2)
--------->
AHL20(2)
------->
TEIL
<---------
ARR14(2)
<
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
YAB1
--------->
AHL20(1)
<---------
ARR14(2)
<-------
atcagctcgttgttgtcagaatctgcatcttcataaatttataataaatataaatatataatgtataactgtatgtagaaccgtatattgtggatccgtg
2288900
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AGI:
At4g04560.1
Description:
transposable element gene. copia-like retrotransposon family, has a 1.0e-94 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)
Range:
from: 2283663
to: 2288384
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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