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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                        <---------ATHB12
                                                                      --------->WOX13(1)
            <---------ZAT18                                  <-----------GT1
      <---------RVE1(1)                                <---------MYB52(1)                      -----
    <------ZmHOX2a(1)                          ------->TEIL<---------GLK1(1)              --------->ALFIN1
--------->ICU4                 --------->GLK1(1)      <---------At4g35610             ---------->DOF2
------>GT1  --------->ZAT18    <---------GLK1(1)      --------->At4g35610           <---------YAB1
 
gaaattaggattttttgcactatttgatagtctgatttctcttctccatgaactctcagttgatttcccatctcaatcaacttggtcatgaaagtgttga  2288000
                                                                 <---------TGA1a
                                                                 <---------ANAC46
                                                                 <---------ANAC58
                                                                 <---------ANAC58
                                                                 ===================================
                                                              =====================HOX2a_HOX2a
                                                              ------>ZmHOX2a(1)
                                                            <---------ICU4
                                                         --------->YAB1
         <----------DOF2                                <---------YAB1                             -
     <----------DOF2                                <---------DAG2          ------>ZmHOX2a(2)      <
  <-----------GT1        <---------YAB1             =======================bZIP_DOF               <-
---->ARR11(3)        <---------GLK1(2)              <----------DOF2        <---------YAB1         <-
 
tattgtcactttctttcatcttcaaattctcatactcccttctaagagattgaagctttatcatcctgacttgtggtgatccttgaaattccaataccaa  2288100
                                                                                          <---------TOE1(3)
                                                                                          <---------TOE2(3)
                                                                                      <----------DOF2
                                                                                    ------>ZmHOX2a(2)
                                                                                    ===============HOX2a_HOX2a
                                                                                   <------ZmHOX2a(2)
                                                                                   ================HOX2a_HOX2a
                              <---------HSFB2a(2)                                 --------->ARR14(2)
                              --------->HSFB2a(2)    <------NtERF2                --------->ARR11(3)
            <----------DOF2   <---------LBD16      --------->ANAC58               <---------ARR11(3)
        <---------ZAT18    --------->GLK1(2)       --------->ANAC58               --------->AGP1
        <---------ZAT14   --------->ARR14(2)      --------->RAP2.6(3)           ----------->ARR10
        --------->ZAT14   <---------GLK1(2) --------->At4g35610                 --------->MYB59
        --------->ZAT18   <---------ARR14(2)<---------At4g35610               <---------MYB52(1)
==========bZIP_DOF      ----------->ARR10  --------->GLK1(2)                 <-----------HVH21
-------->GLK1(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               ----------->GT1 <------ZmHOX2a(1)
----------DOF2       <-------PIF5         <---------GLK1(2)      --------->GLK1(2)<---------ARR14(2)
--------ANAC58       ------->PIF5  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------MYB46(3) <----
--------ANAC58    <-----------RAV1(2)     xxxxxxxxxxxxxxxx>smallRNA(s) ---------->DOF2------>ZmHOX2a(1)
 
ggctttccaagtgcgcttgatgcaggggcgattctcggaaatatggaatctgagacggcagtttgaagaatttgcaaagcggttagatcctttaaggatg  2288200
                                                       <------MYB46(1)
                                                       <------MYB83
                                                       <---------MYB46(3)
                                                      <---------AtMYB61
                                                      --------->ALFIN1
                                                   <---------MYB46(3)
                                                   --------->LBD16
                                                   --------->MYB55(2)
                                                  <---------ANAC46
                                                 <---------LBD16
                                         ===================================HOX2a_HOX2a
                                         ------>ZmHOX2a(2)
                           <-----------HVH21    <-----------RAV1(1)                                <
                           <----------DOF2   ------>ZmHOX2a(1)       ------>ZmHOX2a(1)        <-----
                    --------->ZAT18     <---------GLK1(1)       --------->GLK1(1)             <-----
                <-----------RAV1(1)     --------->GLK1(1)       <---------GLK1(1)             ------
             <----------DOF2           --------->ARR11(3)   <---------HSFB2a(2)              <------
<-----------HVH21 ---------->ID1       <---------ARR11(3)   --------->HSFB2a(2)           <---------GLK1(2)
-----At4g35610  <---------MYB46(3)    --------->YAB1 <---------MYB52(1)              ----------->RAV1(1)
 
ctgcttcacatcgtgtcttttgttgcactgcttcagggctatgatctccttctgcgggtggttttggaactccttcgtcaacaatttcccacagtttctt  2288300
                                     <---------ICU4
                                    --------->ICU4
                                    <---------YAB1
                                  --------->TOE2(3)
     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
 ----------->GT1                  --------->YAB1
<---------HSFB2a(2)               --------->TOE1(3)                                *TSS
--------->HSFB2a(2)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->AtMYB61
---------LBD16             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <---------bZIP60(1)
-----DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                             --------->bZIP60(1)
----------AGL15         --------->ANAC58             --------->ATHB12  ----------->HVH21
--------->AGL15         <----------ID1              <---------YAB1    <-----------HVH21
-----------AGL1         --------->ANAC58    <----------DOF2          --------->ALFIN1         <-----
 
tgtctggaaaattgttttcatcttgatgcgccaaaaaccataattctctttgttgaagattggagtcacaatgtgtgacaccatctccataactctctcg  2288400
                      --------->ATHB12
              <---------ANAC58
              <---------ANAC58
     <-----------GT1 --------->ICU4                                                 ----------->GT1
----ANAC46<----------DOF2                   --------->ZAT18     <------------CBF  ---------->DOF2
 
tgtttattaaactctttacttgaaatgtttggcccttgaatcagtagggctctgataccatgttggaaattgaagcctcttgttacaaagaaaaaacaag  2288500
                                                                                                  <-
                                                                                              ------
                                     ---------->DOF2                                --------->ANAC58
                               ---------->DOF2            --------->ATHB12--------->MYB52(2) -------
                              --------->ANAC46       <---------YAB1<xxxxxxxxxxxxxxxxsmallRNA(i)-----
                 <---------ANAC58--------->ANAC58  <----------DOF2<---------ARR11(3)<---------YAB1--
                 <---------ANAC58--------->ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->ANAC46
  <---------ANAC58         <-------TEIL          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)       --------
  <---------ANAC58        --------->CCA1(2) --------->GLK1(2)     --------->ARR11(3)--------->ANAC58
 
tgtttacttgttgttctgtttcttatgagatacacaaagcaaaagagaaactgacttttattgaatggagaacttgttcgtttcatcacgatacaaaaag  2288600
                                                                    --------->TOE2(3)
                                                                    <---------MYB59<---------O2
                                                           --------->ANAC46        --------->O2
                                                           --------->ANAC58      <-----------GT1
                                                           --------->ANAC58   --------->ANAC46
  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)
--------AHL20(2)                                       --------->CCA1(2)<xxxxxxxxxxxxxxxxsmallRNA(i)
----->GT1                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---------->DOF2     <---
-->DAG2                    ---------->DOF2<----------DOF2  <----------ID1--------->TOE2(3)  <-------
------>GT1              <---------ANAC55(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ANAC58
------->AHL20(2) --------->ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)------>MYB83 --------->ANAC58<
-->DOF2       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------TOE2(3) ------>MYB46(1)       --------
 
tttaaatagaaaacaaatagacacaataagtaaagagttgtgtctctttctctctaagataaacgacacaacctaatctaaaagtcacgactctaacaaa  2288700
                                                                                               xxxxx
                                                                                              xxxxxx
                                                                                              <xxxxx
                                                                                             xxxxxxx
                                                                                            xxxxxxxx
                                                                                           <--------
                                                                                           <xxxxxxxx
                                                                                         xxxxxxxxxxx
                                                                                         <xxxxxxxxxx
                                                                                         xxxxxxxxxxx
                                                                                      <xxxxxxxxxxxxx
                                                                                      <xxxxxxxxxxxxx
                                                                                      <xxxxxxxxxxxxx
                                                                                      <xxxxxxxxxxxxx
                                                                                     <xxxxxxxxxxxxxx
                                                                                     <xxxxxxxxxxxxxx
                                                                                     <xxxxxxxxxxxxxx
                                                                                  --------->At4g35610
                                                                                  <---------At4g35610
                                                                                 <xxxxxxxxxxxxxxxxxx
                                                                      ------>ZmHOX2a(1)xxxxxxxxxxxxx
                                                                     <---------MYB59<xxxxxxxxxxxxxxx
                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                                                <---------At4g35610 <xxxxxxxxxxxxxxx
                                                                --------->At4g35610<xxxxxxxxxxxxxxxx
                                                                <---------ZAT2   xxxxxxxxxxxxxxxx>smallRNA(s)
                                                                --------->ZAT2  --------->MYB46(3)
                 <---------ICU4                       --------->ARR14(2)        <xxxxxxxxxxxxxxxxxxx
                 --------->YAB1                       <---------GLK1(2)<---------ICU4xxxxxxxxxxxxxxx
         ----------->RAV1(1)             --------->AHL20(2)    ------->TEIL     <xxxxxxxxxxxxxxxxxxx
  --------->AHL20(2)                     --------->YAB1       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
<----------DOF2 --------->ICU4          <---------ATHB51    <---------REM1(1)<xxxxxxxxxxxxxxxxxxxxxx
------ALFIN1  <---------ICU4     ------>MYB46(1)      <---------ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxx
-----MYB.PH3(2) <---------YAB1   ------>MYB83      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxx
---------DAG2<---------YAB1    <---------MYB59 <---------MYB52(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)x
->MYB46(3)   --------->ICU4    --------->AtMYB61 --------->MYB52(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
 
caccttttaatacaacataattataacttatagaccaaactcaattataaactaacagatttgatgcagcttcctaatttccaacagctccatgatgttt  2288800
          xxxxxxxxxxxxxxxx>smallRNA(s)
          xxxxxxxxxxxxxxxx>smallRNA(i)
          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
    <-------GAMYB
   xxxxxxxxxxxxxxxx>smallRNA(i)
  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
<---------At4g35610
--------->At4g35610
<---------ZAT2
--------->ZAT2
xxxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxxxx>smallRNA(l2)
xxxxxxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxxxxxx>smallRNA(i2)
xxxxxxxxxxxx>smallRNA(se3)
-YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxx>smallRNA(i2)
xxxxxxxxxsmallRNA(se3)
xxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxsmallRNA(si3)                                                                       <-----
xxxxxxxxxsmallRNA(si3)                                                                       -------
xxxxxxxxxsmallRNA(i2)                                                                       <-------
xxxxxxxxxsmallRNA(fl3)                                                                      <-------
xxxxsmallRNA(si3)                             --------->AHL20(2)                            <-------
xxx>smallRNA(s)                          <---------ICU4                                    ------>ZmHOX2a(2)
xxxxxxxsmallRNA(fl3)                     <---------AHL20(2)                                <--------
xsmallRNA(s)    --------->ARR14(2)      --------->AHL20(2)                                <------ZmHOX2a(2)
xxxxsmallRNA(s2)--------->GLK1(2)     --------->YAB1             <---------------AGL15   <---------ARR14(2)
xxxxsmallRNA(le3)                  --------->YAB1             <-----------GT1            --------->TCP20
x>smallRNA(s)   <---------ARR14(2)--------->AHL20(2)     ----------->GT1        --------->ARR14(2)
xxxxsmallRNA(si3)     ------->TEIL<---------AHL20(2)  <---------AHL20(2)     ----------->GT1--------
xsmallRNA(le3) <---------GLK1(2) --------->AHL20(2)<---------AHL20(1)     --------->ARR14(2)<-------
xsmallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i)    <---------AHL20(2)<-----------------AGL3   --------->ARR14(2)
xxxxxxxxxxxxsmallRNA(si3)     --------->AHL20(2)  --------->AHL20(2)------->TEIL<---------ARR14(2) <
xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------YAB1--------->AHL20(1)     <---------ARR14(2)<-------
 
atcagctcgttgttgtcagaatctgcatcttcataaatttataataaatataaatatataatgtataactgtatgtagaaccgtatattgtggatccgtg  2288900
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AGI:  At4g04560.1   
Description:  transposable element gene. copia-like retrotransposon family, has a 1.0e-94 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)
Range:  from: 2283663    to: 2288384    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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