AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
       --------->At4g35610
       --------->ZAT2
------->TOE1(2)                                                             ------>ZmHOX2a(1)
----->ARR14(2)                                                             --------->TOE1(3)
--->TEIL                                                          <----------DOF2
->MYB46(1)                                                     <------ZmHOX2a(1)
->MYB83<---------At4g35610                            <---------WRKY38(1)  --------->TOE2(3)
---MYB59                                 --------->TOE2(3)   --------->ANAC58        --------->At4g35610
->DEAR3(2)                               --------->TOE1(3)   --------->ANAC58    --------->ANAC46
 
acctgcaagtagctgcaatagcagcgataccatcagtagagaaaccttcacaagaagtcaacacaaggactttaaaatccttaaacgaagcagcaatttt  1406700
                                                                <------NtERF2
                                                               ------>NtERF2
                                                              --------->RAP2.6(2)
                                                              --------->DEAR3(1)
                                                              --------->ANAC46                  ----
                                                              <---------ATERF1(2)               ----
                                                              --------->RAP2.3(3)             ------
                                                              --------->RRTF1(2)              ------
                                                              --------->RAP2.3(2)             <-----
                                                              --------->RRTF1(3)        --------->YAB1
                                                              --------->DREB2C(2)     --------->ANAC58
                         ------>ZmHOX2a(1)                    --------->ATERF1(2)     --------->AtLEC2
                    --------->AtMYB61                        --------->ERF1           --------->ANAC58
                    <---------ALFIN1                         --------->ORA47(2)    --------->WRKY18(1)
                 <---------ALFIN1                            --------->RAP2.3(1)--------->ANAC58----
                --------->MYB46(3)                           --------->ATERF1(1)--------->ANAC46----
            <-----------HVH21                        ------->TEIL           <<<<<<<<<GATA-1  <------
           --------->WOX13(1)                   --------->CCA1(2)           <<<<<<<<<GATA-2  -------
       --------->YAB1    ====================HOX2a_HOX2a    <---------RAP2.3(1) --------->ANAC58----
     --------->ANAC58 ------>MYB83    ------>ZmHOX2a(2)<---------DAG2       <<<<<<<<<GATA-3<--------
     --------->ANAC58 ------>MYB46(1)--------->GLK1(1) <----------DOF2      <<<<<<<<<GATA-4---------
 
ctctaagcactcatcagtcaccaccatcctcttcattctgatctcttcaagagacgaacttttcgccgccatagcttcaatccacggccaagcataacca  1406800
                                                                                         <---------At4g35610
                                                                                      --------->LBD16
                                                                                     --------->ANAC46
                                                                         --------->DEAR3(2)
   ------->GAMYB                                                         --------->MYB46(3)
   --------->YAB1                                                        <------------AtMYB77
   --------->AtMYB61                                                     --------->HSFB2a(1)
  --------->MYB46(3)                                                     <---------HSFC1(2)
  <---------ATHB12                                                       --------->HSFC1(2)
  <---------MYB55(2)                                                     <---------HSFB2a(1)
 ------>MYB83                                                          <---------ARR14(2)<---------ZAT2
 -------->P                                                         --------->LBD16  ------->GAMYB
 ------>MYB46(1)                                                    <---------HSFB2a(2)  --------->At4g35610
----->ANAC46                                                       <---------LBD16  --------->MYB46(3)
----->ANAC58                                                      <---------LBD16  <---------At5g28300
--->AtMYB61                          <---------ANAC58          <---------At4g35610<-----------GT1
->GAMYB                              <---------ANAC58      ------>ZmHOX2a(2)     ----------->HVH21
----ALFIN1                      --------->ALFIN1          <------ZmHOX2a(2)  <---------ANAC46
-->MYB83                    --------->ZAT14              <---------AGP1--------->ARR14(2)--------->ZAT2
-->MYB46(1)                 <---------ZAT14              --------->ARR11(3) <---------MYB52(1)
---MYB55(2)               --------->At4g35610            <-----------ARR10--------->DEAR3(1)    ----
-->MYB46(3)               <------NtERF2                  <---------ARR11(3)<-----------HVH21 <------ZmHOX2a(1)
----->ANAC58            <---------WRKY38(1)          ---------->DOF2--------->HSFB2a(2) ----------->RAV1(1)
-ARR14(2)        <---------YAB1 <-----------RAV1(1) <XXXXXXXXXXXXXXXXXXXXMIR1886.2--------->ARR14(2)
>ARR14(2)<------ZmHOX2a(1)<---------At4g35610  ---------->DOF2 --------->At4g35610<---------ARR14(2)
 
ccccaaccatcaggaacgagattatagtcagcgaagtgtggcttccccttcaaagtcaaagatctcatctccgggaaccgtcgtgtaaccgcagcaggac  1406900
           --------->ARR14(2)
       <------------MYB.PH3(1)                                                             ------>ZmHOX2a(1)
     --------->MYB52(1)                                                               --------->LBD16
    ----------->HVH21                     <---------MYB52(1)                        <---------LBD16
  --------->ANAC46---------->DOF2       <---------ANAC58    <---------ANAC58      <---------ARR14(2)
  <---------ANAC55(2)                   <---------ANAC58    <---------ANAC46     <---------GLK1(1)
------->HVH21 <---------ETT(1)  ------>ZmHOX2a(1)           <---------ANAC58     --------->GLK1(1)
 
tgaccgcgtaacagtttccgacaaagactcgcttcctagtcttccgttctgtctcaaaccatgacttgcagaccagagaaacagagttccggtcctcgtt  1407000
                --------->GLK1(1)
                --------->CCA1(2)
                <---------GLK1(1)
               --------->ARR14(2)
               <---------ARR14(2)       --------->GLK1(2)
              <------ZmHOX2a(1)         <---------ARR14(2)                          --------->ANAC58
         <------ZmHOX2a(1)         --------->ALFIN1                                 --------->ANAC58
    <---------ATHB12            <---------AtMYB61    --------->YAB1           --------->ALFIN1    <-
  --------->WOX13(1)      <---------ALFIN1    --------->GLK1(1)             --------->ALFIN1    ----
 
ggaatcaatgaaggagaggatatgttccaacaccttaggtgggaatcggagacccatcagaaacagagtgagagagagagaggggggaagaaatgaagaa  1407100
                     <---------YAB1
        --------->GLK1(2)
       --------->ARR11(3)                                                              ---------->DOF2
       <---------ARR11(3)                                      <---------AHL20(2)    --------->ANAC58
     <---------TOE2(3)                     <------------CBF  ----------->TBP         --------->ANAC58
--------TOE2(3)    --------->CCA1(2)  *TSS--------->ATHB12 <-----------TBP      <----------ARF1
------>DOF2<---------YAB1      ------>ZmHOX2a(2)   <----------DOF2          --------->ALFIN1
 
aaaggtttgagattttgattcgatatgagtgtgatctaaatcgaaagattgaagcttttgatatatataaacagagcaagtggaagacaagaaagagtat  1407200
                                                                                              <-----
                                                                                              ------
                                                                                              <-----
                                                                --------->O2                 <------
                                                                --------->TGA1a              -------
                                                      <---------ANAC58                       <------
                                                      <---------ANAC58 --------->ZAT18      --------
                                              --------->DAG2    <---------TGA1a      --------->ZAT18
                                             ---------->DOF2    <---------O2         <---------ZAT18
                                             =============================bZIP_DOF <---------At4g35610
          --------->GLK1(2)    <-----------HVH21     <---------At4g35610           --------->At4g35610
--------->ANAC58       >>>>>>>>>SUP       --------->YAB1    --------->ANAC58  --------->REM1(2)
--------->ANAC58 <------ZmHOX2a(1)       --------->AHL20(2) --------->ANAC58 <---------ANAC46-------
 
gacaagacaagagaatcgaaggagacagtgtccatgtgagaccattaataaagttgagcttgcacccatgtgagcctactgtgtatagctcactaatata  1407300
                     --------->ZAT14                                           <---------TOE2(3)
                     <---------ZAT18                                     <--------HAHB4
              <---------ICU4                                             <---------ICU4
      ------>ZmHOX2a(1)                                                  --------->ATHB12
     --------->TOE1(3)                                                  --------->ICU4
     --------->TOE2(3)                                                  <---------ATHB12
----AHL20(2)  --------->ATHB51                                      ------>ZmHOX2a(2)
--->AHL20(2)  <--------HAHB4                                      <-----------ARR10
----YAB1  <---------ATHB12                                        <---------ARR14(2)
---AHL20(1)  <---------YAB1                                       --------->ARR14(2)
-->AHL20(1)  --------->ICU4        <-----------HVH21              <---------ARR11(3)         <------
---AHL20(2)--------->YAB1         --------->WOX13(1)              --------->ARR11(3)         <------
->YAB1==================================HOX2a_HOX2a               <---------AGP1             -------
-->AHL20(2)<---------ICU4        ------>ZmHOX2a(2)               <---------CCA1(2)   <-----------GT1
 
attagtttccttaatcataattagtttactctgtgatccatcacatgtaagtctgtgtgagaactcgtggatctaatcatttatggtattacccagttca  1407400
                   <---------ICU4
                  --------->ICU4
              <---------MYB52(1)
             --------->TOE2(3)
            ----------->GT1                                       <----------DOF2
           <-------TEIL                                  <---------AHL20(2)
         <---------GLK1(2)                              <---------AHL20(2)
         <---------ARR14(2)                             <---------AHL20(1)
    <-----------HVH21                                   --------->AHL20(2)
   --------->bZIP60(1)                                  --------->ARR11(3)
   <---------bZIP60(1)                                  <---------ARR11(3)
   <---------TGA2(1)                                    --------->AHL20(1)  ------>MYB46(1)
   --------->TGA2(1)                                   --------->AHL20(2)   ------>MYB83           -
---ZAT14 --------->ARR14(2)                          --------->AHL20(2)   <---------MYB59          -
---ZAT18--------->At4g35610      <---------YAB1----------->GT1  <---------YAB1                    --
-->ZAT14<---------At4g35610<-----------GT1   ---------->DOF2 <---------AHL20(2)               <-----
 
cacatgatgtcagattcgttaattagtattttacttatgcttcagtttcaaagtaaaaatatattttatctttggtaccaaatatcaattcatattgtta  1407500
                                                                                                 <--
                                                                                               -----
                                                                                            --------
                                             <---------ANAC46                              <--------
        <-----------GT1                      ----------->GT1              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
 --------->YAB1                 --------->YAB1                     ---------->DOF2      --------->ICU4
<---------ATHB12               <---------ATHB12                  <---------YAB1     <xxxxxxxxxxxxxxx
----->MYB46(1)   ------->TEIL --------->ANAC58                 --------->ATHB12    <---------At4g35610
----->MYB83   ------->GAMYB   --------->ANAC58                <---------YAB1       <xxxxxxxxxxxxxxxx
------->WOX13(1)<---------GLK1(2) <---------TOE2(3)       --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxx
------GT1 --------->REM1(1)  --------->WOX13(1)           <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
 
ccaatcaaatgttacaactgaatctcttcaaacaatcaacgtttttggacgtgaaaaacatttttatgattaaagcttcgaatggcaactcattatcaaa  1407600
<- Previous    Next ->

AGI:  At4g03190.1   
Description:  GRH1 (GRR1-LIKE PROTEIN 1); ubiquitin-protein ligase. Identical to GRR1-like protein 1 (GRH1) [Arabidopsis Thaliana] (GB:Q9ZR12;GB:Q94AU0;GB:Q9C5Y7); similar to TIR1 (TRANSPORT INHIBITOR RESPONSE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G62980.1); similar to AFB2 (AUXIN SIGNALING F-BOX 2), auxin binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G26810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22414.1); similar to transport inhibitor response 1 [Gossypium hirsutum] (GB:ABG46343.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73714.1); contains InterPro domain Cyclin-like F-
Range:  from: 1404887    to: 1407139    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version