Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           --------->GLK1(1)                                                                     <---------ANAC46                                                                     <---------HSFB2a(2)            -                                                                    <---------LBD16        --------->MYB46(3)                               --------->GLK1(2)               <---------TOE1(3)      --------->TOE2(3)                          ------>ZmHOX2a(1)                    <---------TOE2(3)  <---------AHL20(2)-                          --------->LBD16                  <---------GLK1(2)     --------->AHL20(2) -   ctcgatggacatagcagaaaacaacatcctgaaaatcggaagattaacaaaaaaaaacacagattagggtttcggaaattcaaataaatctcaacaaatc  1379000               <---------GLK1(2)                                         --------->AHL20(2)            <---------ALFIN1                                          ----------->GT1           --------->ANAC46                                         ------------------------>ANAC81         --------->ANAC46                                    <---------ANAC58        --------->MYB46(3)      <----------DOF2              <---------ANAC58              <---------GLK1(1) -------->ANAC46         --------->YAB1                      <---------ANAC46   ---------->DOF2  ---- -------->ANAC58        <---------ATHB12                    <-----------------------TaNAC69(2)   <--- -------->ANAC58      --------->WOX13(1)    --------->AHL20(2)  --------->REM1(2)    ---------->DOF2   acacgaatcaaacaccacattctccaatcaaaaactttataaaaaaaaaaatcgaaaacagaggcgtgaagaagattaaaaaaaaagaaaaggaaacctc  1379100             <---------ICU4      <-------MYC2      ------->MYC3                               <---------ZAT18      ------->MYC2                         ------->GAMYB      <-------MYC3                        --------->ANAC46     <---------ANAC58                     --------->MYB46(3)     <------NtERF2                      <---------DOF5.7(2)     <---------ANAC46                  <---------WRKY38(1)     <---------ANAC58                  <---------WRKY45    ------>NtERF2         --------->ARR11(3)     --------->ZAT14   <---------ANAC46       <---------ARR11(3)   --------->At4g35610                           <-------   <---------ANAC58      --------->YAB1<---------WRKY12                            ----------->RAV1(1)   <---------ANAC58     <---------YAB1--------->DOF5.7(2)                         <---------ETT(1) ----->HSFB2a(2)    ------>ZmHOX2a(1)<-----------HVH21           --------->YAB1<---------ARR14(2) ------HSFB2a(2)   --------------------->WRI1  <---------At4g35610             --------->GLK1(2)   gagaggcgcgtgtaatcttgtccttgatgatattgacctcgtcaacgacagcgaactcttgaaacaatgttaagagttgagattccgacatatgtttcgg  1379200                                                                      --------------------->WRI1                                                                   >>>>>>>>>>>>>>>>>LFY                                                                   --------->LBD16                                                                   ------>NtERF2                                                                  --------->ANAC58                                                                <---------ATERF1(1)                                          <-----------GT1 ------>ZmHOX2a(1)                <----------DOF2         <-----------GT1------>ZmHOX2a(1)            --------->DAG2        ---------->ID1   <-----------GT1--------->ANAC58 --LBD16   ---------->DOF2     <<<<<<<<<TBF1    --------->ARR14(2)--------->ANAC46   aatttgtccgacgaaaagctttacgctctcttcttcttcgtttttctccctattctcctccttcgcttccgccattgttgtctccgtcttctctcttgac  1379300                                                                                                    <                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                                                              -------                                                                                              <------                                                                                      <---------HSFB2a(2)                                                                        <---------AHL20(2)   <-------                                                                       <---------AHL20(2)    <-------                                                          <-----------GT1             --------->HSFB2a(2)                       ---------->ID1     ------>ZmHOX2a(1)            --------->AHL20(2)    --------       --------->AHL20(2)        <----------DOF2        <-----------GT1<---------AHL20(1)    --------   aaaaaaaaaaaaaatggtcgtcttcgtcgtcttctctttctctcctctgagttttttttttctctctctacaattttttttttggtttctaaaaatttat  1379400    --------->MYB52(2)                    <---------ICU4 ---------YAB1                            --------->YAB1 ------>AHL20(2)                          --------->ATHB51 -------AHL20(2)                         <---------ATHB51 ------AHL20(2)                          --------->ICU4                                            -- -->AHL20(2)                             <---------ATHB12                                          -- ---AHL20(2)                           --------->WOX13(1)                                      <----- --AHL20(2)                          ------------>CBF                                          ------ --AHL20(1)         *TSS    ---------->DOF2                ----------->GT1                     ------ ->AHL20(1)    ----------->GT1 ----------->GT1        <------ZmHOX2a(1)                       ------- ->AHL20(2)    <----------ID1 ----------->GT1    <------ZmHOX2a(1)                            <------   ttattttagttgcaagaaggaaaaacaaaaaaaaggaaaatcaattatggaggagaggatgaagaaaaatggtggaatttgagaagttgggagaaattaa  1379500                <------------CBF               --------->ATHB51               --------->YAB1               --------->ATHB12               <------------ATHB5          ------------>CBF    <---------TOE2(3)  <----------DOF2 <---------YAB1<---------ICU4                --------->ARR11(3) ------->AHL20(2)   ----------------->AGL1<---------TOE2(3) ------->YAB1  <--------ATHB1            <-----------GT1 ----AHL20(2)  -------->ATHB1   --------->ANAC55(2)                          <------ZmHOX2a(1) --->AHL20(2) <---------YAB1    <---------ANAC55(2)        --------->At4g35610            <---------TOE2(3) --->AHL20(1) <---------ATHB12  <---------ANAC46           <---------At4g35610   ---------->DOF2 -->AHL20(2)  <---------ATHB51  <---------ANAC55(1)        <---------------------WRI1 <----------DOF2 ---AHL20(2)  --------->ICU4 <---------MYB52(1)         ---------->DOF2     ----------->GT1   attataaatgttgacaataattgccctttctgttacgagttatttacgatattgccattacagctgtacatagaaggaaggagaaaagcttttacgatga  1379600                       --------------->AGL15                                   <---------AHL20(2)                      <-----------------AGL1                                  <----------DOF2                     ---------->ID1                                    <---------ANAC58            >>>>>>>>>ARR2                                              <---------ANAC58            >>>>>>>>>ARR1                                            <-----------GT1          <---------TOE2(3)           <----------ID1     <-----------GT1<---------LBD16         <----          <---------YAB1  <---------MYB52(1) ---------->DOF2     <----------DOF2           <---------   gagggaacacttaagattgttttgtctcgttatgggagttacgacgaaaaagactaaattagccttcctttttacgcgcgttttattgtgtttctttttc  1379700                                                                                          -------->HAHB4                                                                                          <--------ATHB1                                                                                          <--------HAHB4                                                                                          --------->ATHB51                                                                                          <---------ICU4                                                                                          --------->YAB1                                                                                          --------->ATHB12                                                                                         --------->ICU4                                                                                         --------->AHL20(2)                                                                                         <---------ATHB51                                                                                         <---------YAB1                                                                                       --------->YAB1                                                                                     <---------AHL20(2)                                                                                     --------->AHL20(2)                                                                                  --------->AHL20(2)                                                                              <---------YAB1                                                                   --------->At4g35610<---------AHL20(2)                                                                   <---------At4g35610--------->AHL20(2) -------GT1                                                     ---------->DOF2   <---------AHL20(2) -DOF2                                                     ---------->DOF2   --------->AHL20(2)   tctctctatctatctgttcgaaaatgtgtatttgtagtcaaacctgtattgttttgtttttaaaaggaaagctgtcaatttttataaattaataattaga  1379800                                                                      <---------AHL20(2)                                                                      --------->AHL20(2)      <------ZmHOX2a(2)                                         --------->HSFB2a(2)                <-     <---------ARR11(3)                                   <---------------AGL15        <---------At4g35610     --------->ARR11(3)                  --------->ALFIN1 --------------->AGL15       ----------->GT1 --------->YAB1                        <---------ANAC46  <-----------------AGL2     <-------TEIL   <-   caattacgatctaaaaatgaacgagcattttgaacaatatgaggtgttggaacgagcattctacttatagaataaaatagtttaggtgcagataataggt  1379900  Previous    Next  AGI:  At4g03110.1    Description:  RNA-binding protein, putative. similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G03457.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22427.1); contains InterPro domain Ribonucleoprotein, BRUNO-like (InterPro:IPR015903); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343) Range:  from: 1376306    to: 1379420    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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