Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      --------->TOE1(2)                                  <---------------AtSPL8                                  <---------------AtSPL3                                 ---------->DOF2                             ------>MYB83                             ------>MYB46(1)                            --------->MYB52(1)           --------->At4g35610 ------->GAMYB           <---------HSFC1(2)      <------ZmHOX2a(2)     ----------->RAV1(1)        --------->HSFC1(2)     --------->ARR14(2)   --------->MYB46(3)           --------->HSFB2a(1)      <----------DOF2     <---------ARR14(2)   --------->DEAR3(2)           <---------HSFB2a(1)   *TSS ------>NtERF2          <---------ARR14(2)        <---------HSFB2a(2)       ------>ZmHOX2a(1)    ---- -------->DEAR3(1)  --------->At4g35610           --------->HSFB2a(2)    <-----------GT1         <--- ->DOF2------>ZmHOX2a(2)--------->ARR14(2)<------ZmHOX2a(2)             <-----------GT1     XXXXXXXXX   cgacgacgatcggagatgaagaagcggaaccaacagaaagtacgatcattttctcgatgcttcgacgaactaattttcctctctttagaagtctcagaac  1321500               <---------HSFC1(2)               --------->HSFC1(2)             --------->ARR11(3)                                      --------->YAB1         ---------->DOF2                   <---------AHL20(2)       ----------->TBP      ----------->GT1                     <---------AHL20(1)  --------->ARR14(2)  ---------->DOF2                         --------->AHL20(1)  <---------ARR14(2) ------->GT1 <---------GLK1(2)         <-----------TBP      --------->ANAC46 ------ZAT6  <---------ARR11(3)      <----------DOF2    <-----------GT1 XXXXXXXXXXX>MIR2937            ---------->DOF2       --------->AHL20(2)---------->DOF2       <------   tgttaaaagagtaaagatacttcgaaacagaccccaaagctttatatatttctgaattaaacccgatactataaaaaagagtcagaaaatactatttttc  1321600                                                                                               ------                                                                                               <-----                                         <---------AHL20(2)                                   <------                                        <---------AHL20(2)                                 <---------AHL20(2)                                    --------->AHL20(2)                                     --------->AHL20(2)                                    <---------AHL20(2)                                    --------->AHL20(2)                        ---------->DOF2 <---------AHL20(1)                                <---------AHL20(2)                      --------->CCA1(2) --------->AHL20(2)             <---------YAB1 <---------AHL20(2) -----GT1    <---------ATHB12       --------->AHL20(1)       ---------->DOF2          <---------YAB1   attttcgataatccaatgttgaagataaaaggagggaattaattaattttagaaatattaagagaaagttttgatgatatatagtttttttattaattta  1321700                                                               --------->ATHB51                                                               <---------ICU4                                                               --------->YAB1                       -                                                               <------------ATHB5                   <                     --------->ANAC46                          <--------ATHB1                      <-                     --------->ANAC55(1)                      <---------ATHB12                 ------                     <---------ANAC55(2)                      <---------ATHB51                -------                     --------->ANAC55(2)                      --------->ICU4                 --------                    <-------TEIL                           ----------------->AGL1            --------       ---------->DOF2                  <---------ICU4    <---------ZAT18                    -------- --->AHL20(2)     <---------ARR14(2)   --------->ICU4     --------->ZAT18               <------------ ----AHL20(2)     --------->ARR14(2)   <---------YAB1    ----------->GT1           --------->DAG2  <- ---AHL20(2)   --------->YAB1    <---------TOE2(3)   <---------ZAT14              --------->MYB52(1)<   tatcacatccaaagtaatcatatacgtattggtttaatgtgataatttcagatagtatagggcaataatgggaaatataagaaataagggggagaacgtc  1321800     ----------->GT1 -------->ATHB51 --------ATHB1 --------ATHB12                                            *TSS ------>CBF                                                <-----------GT1 -->TOE2(3)                                           <------ZmHOX2a(1)   ------>ZmHOX2a(1) ->ANAC58                                            <----------ID1   <---------ALFIN1            <-- ->ANAC58                                    <---------ANAC46      --------->MYB46(3)             --- --->GT1     <---------ICU4                  <---------ANAC58 --------->TOE2(3)                  <--- ---AtSPL3  <---------ATHB12    ----------->GT1   --------->ICU4 -------->P                      <--- --------ATHB51           ---------->DOF2    <---------ANAC58 --------->TOE1(3)                  ---- ---------ICU4   ------------>CBF     <----------DOF2----------->GT1--------->ANAC46            <----   aataattcggataaatcatttcaatggagaaagagagtgactttgttgtgtgatgaggaaaaaaccttacccgctcctctaaaaccctcgtcttctccga  1321900            <---------LBD16          <---------ARR14(2)         <---------ZAT2         --------->At4g35610         <---------At4g35610                                                       <------MYB83         --------->ZAT2                                                           --------->MYB46(2)      ------>ZmHOX2a(1)                                                           --------->MYB59     --------->TOE2(3)          --------->ANAC58                                <---------MYB52(1) -------ARR11(3)                --------->ANAC46                         <---------ANAC58 ------>ARR11(3)            --------->YAB1                               <---------ANAC58 ------CCA1(2)             <---------ATHB12                          <---------ANAC58   <---------YAB1 ------GLK1(1)           --------->WOX13(1)                          <---------ANAC58   <---------TOE2(3) ----->GLK1(1)       --------->GLK1(1)       <-----------GT1    <-----------RAV1(1)<------MYB46(1)  < -----MYB52(1)--------->LBD16   --------->ANAC58 ------>ZmHOX2a(1) <---------MYB46(3)   <---------TOE1(3)   tatctttcctcagctccggtgagatttcaatcacacgctggtccaattctccttattccatagtttctgtggtttgcttctagttaggttatggtttttt  1322000                                                                --------->At5g28300      <---------TOE2(3)                                        <---------ZAT6  <-------GAMYB                                     --------->At4g35610 --------->MYB52(2)       --------->YAB1            <---------At4g35610 <---------MYB46(3)  <---------YAB1   <---------LBD16          ----------->GT1 -------TEIL      ------->TEIL     <---------AHL20(2)    <---------------AtSPL3<--------P      <-----   ggttcgttgatgttaacatgaacatgaatgatggtattttttcggagttttctgagctaattgtactgtaaaattgtctgggttagtccgaattggtatg  1322100                                    <---------MYB52(1)                                  <---------ANAC46                                  <---------ANAC58                                  <---------ANAC58        <---------YAB1     <---------ANAC58                          <---------ZAT6    <-----------RAV1(2) <------MYB46(1)        ----------->RAV1(2)        --------->YAB1    ==============================RAV    --------->MYB59     ---------->DOF2 ----YAB1                 <-----------RAV1(1)    ---------->DOF2<------MYB83 <---------ANAC58   attttctcgttgataatcgtcgattttagtgttgttccgtttttgtgcaggtaaagaatgaagattaggttctgtaatggcttcacaaagcctgggtttt  1322200                                            --------->ZAT14                                            <---------ZAT18                                       ------>ZmHOX2a(2)      <---------ICU4                                      <------ZmHOX2a(2)   <---------------AGL15                  <---------ALFIN1   <---------ARR11(3)   --------------->AGL15                ------>NtERF2        <---------AGP1      ----------------->AGL2              --------->MYB46(3)    <---------CCA1(2)    ----------------->AGL3              --------        <----------DOF2          <---------MYB52(1)      ----------------->AGL1             ---------    --------->ZAT18             <---------RAP2.6(3)      <-----------------AGL1             <--------    <---------ZAT14             <-----------HVH21        <-----------------AG   ------->GAMYB<-------    <---------ZAT18             <-------GAMYB            <-----------------AGL2 --------->AtMYB61    --------->ZAT14   <----------DOF2--------->ARR11(3)  <-----------------AGL3--------->MYB46(3)   tgctagttcactttgagccaccatctttttttgccgttagatctcgttcactctctgattccacttatggcaacttatgcaaccacaagaagagacctgg  1322300                                             <-----------GT1                                          --------->ARR11(3)                                          <---------ARR14(2)         <---------HSFB2a(2)                                          <---------GLK1(2)          --------->HSFB2a(2) ->TOE1(2)                                <---------ARR11(3)      <---------At5g28300            <<<< -->RAV1(2)                        <---------ARR14(2)    <----------DOF2         <---------ARR11(3) -O2                               --------->ARR14(2)   --------->MYB52(2)   ---------->DOF2  <<<<<<< --LBD16               <---------ZAT18    --------->ARR14(2)  --------->ARR14(2) --------->ARR11(3) <   gactggaattggtctaactgttcaatgcgctattgcaaatcggagattttcttcacgttctttggattcaccgagaagagaaaggtcttctcgttcttct  1322400  Previous    Next  AGI:  At4g02980.1    Description:  ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1). Identical to Auxin-binding protein 1 precursor (ERABP1) [Arabidopsis Thaliana] (GB:P33487); similar to resistant endoplasmic reticulum auxin-binding protein 1 [Sinapis arvensis] (GB:AAG24497.1); contains InterPro domain RmlC-like jelly roll fold (InterPro:IPR014710); contains InterPro domain Auxin-binding protein; (InterPro:IPR000526); contains InterPro domain Cupin, RmlC-type (InterPro:IPR011051); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886) Range:  from: 1319656    to: 1321477    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g02990.1    Description:  mitochondrial transcription termination factor family protein / mTERF family protein. similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G44020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22461.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 1321859    to: 1324004    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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