Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <---------YAB1                                              --------->GLK1(2)                                             <---------GLK1(2)                                             <---------ARR11(3)                                             --------->ARR11(3)                                             <---------ARR14(2)                                             --------->ARR14(2)                                            <---------HSFB2a(1)                          --------->DAG2    <---------HSFC1(2)                         ---------->DOF2    --------->HSFC1(2)------>ZmHOX2a(2)                    <---------ANAC55(2)     --------->HSFB2a(1)                    ----------->GT1 <-----------RAV1(1)     --------->ARR11(3)                  <-----------RAV1(2)<-------GAMYB--------->YAB1               <---------CCA1(2)    <---------DEAR3(2)  --------->YAB1         --------->ARR11(3)         <---------MYB46(3) --------->ICU4 ---------->DOF2  ==============================RAV  ---------->DOF2                            <---- -----GT1<---------ARR11(3) --------->ZAT2 ----------->ARR10<---------ARR11(3)    ----------->GT1   aggtaaagaaacatctcatatcaggtaaaaagctgggtctgttggaagattctcataaagatgatctctcttatgtatgagaagttgaaaaactagttgt  1072100                                                                                   <---------AHL20(2)                                                                                   --------->AHL20(2)                                                                                 <---------WOX13(1)                                                                            --------->At4g35610                                                                            --------->ZAT2                                                                            <---------At4g35610                                                                            <---------ZAT2                                                                          <-----------RAV1(2)                            <-------MYC3                               --------->At4g35610                            ------->MYC3             --------->YAB1    <---------At4g35610               <---------ANAC58                      <---------ICU4    --------->ZAT2        <---------YAB1      ------->MYC2            --------->ICU4     <---------ZAT2  <---------AHL20(2)        <-------MYC2            <---------YAB1<---------At4g35610     <---------ANAC58 -----ANAC46   <---------ANAC58     --------->YAB1--------->YAB1  --------->At4g35610     <---------ANAC58   gtatttcattcttattagcttgggtttgcacatgggaatgatatatactcagtcatcatcagtttatgagctaagctcagctgatttatatgacttgcta  1072200                                                --------->TOE2(3)                                                --------->YAB1                                              ------>MYB46(1)                                <-------TEIL                                <---------At5g28300      ---------->DOF2                    ---------                               <-----------GT1------>MYB83                   <---------AHL20(2)     -                            <---------ICU4  <---------MYB59 --------->At4g35610            --------->TOE1(3)                        --------->YAB1      <---------MYB46(2)--------->ZAT18--------->AHL20(2)     <   atatagttagtgcttaaaacgaactatcaaaaattactgtcgaataccaaacttaattcaaaagctcacaattcgatattaaaattttgaaaacgttcac  1072300                                                                             --------->bZIP60(1)                                                                             <---------bZIP60(1)                                                                          <---------TOE2(1)                                                                          <---------TOE1(1)                      <-------TEIL                                       --------->SPL7           <--                      --------->ZAT18                                   <---------SPL1(1)         <--                    ------->MYC2                                       <---------SPL1(2)          <--                    ------->MYC4                                       <---------SPL7             ---        --------->TOE1(3)                      <---------ARR14(2)     <---------ANAC58           <---        <---------MYB59<---------AtLEC2        --------->ARR14(2)     <---------ANAC58       <-------        --------->TOE2(3)                    --------->LBD16         --------------->AtSPL3  <-------      ------->TEIL  <-------MYC3            --------->ANAC46    <---------ZAT14            --------->At4g35610 >DOF5.7(2) ---------->DOF2                <---------LBD16      <---------ZAT18        --------->HSFB2a(2) -------->AHL20(2)  ------->MYC3        <---------GLK1(1)       --------->ZAT14        <---------HSFB2a(2) ---------AHL20(2)  <-------MYC2     <---------YAB1<----------DOF2 ------------------>SPL14<---------At4g35610   aataaatgaacctaaaaagacatgtgcattgaactcattttgatacccggaccctttacattttagttcagtccgtacgatgtcattttcgagagctgtt  1072400         <---------ANAC58                      --------->TOE2(3)         <---------ANAC58         --------->ARR14(2)     <---------ANAC55(2)          <---------ARR14(2)     <---------ANAC58             --------->GLK1(2)                                     <---------TCP20     --------->ANAC55(2)  <-------GAMYB        <---------DAG2                           --------->ARR14(2)     <---------ANAC58  <---------ANAC58      ------>MYB46(1)                       --------->MYB52(1) <----------DOF2       <---------ANAC58      ------>MYB83                        <---------SPL7 -------ANAC58        <---------MYB46(3)    <---------ALFIN1                     *TSS --------->LBD16 -------ANAC58       --------->ALFIN1      <---------MYB59                      --------->ANAC46----- -------ANAC46     <---------ANAC58        --------->MYB46(3)           --------->LBD16 --------->PCF2 ------>ANAC55(2)  <---------ANAC58      --------->PCF2               <---------LBD16 ----------->HVH21 ------LBD16       <---------ANAC46    ----------->HVH21      --------->ZAT6  <---------ANAC46------- ----RAV1(1)       <-----------RAV1(1)<-----------HVH21 ----------->GT1--------->LBD16<---------SPL7 --MYB46(3)    <----------DOF2    ------->TEIL --------->TOE1(3)  --------->KAN4(2)--------->SPL7   gcgcattacttacttgcctttgtgtgggtgttagtgaatctgtgacccaccttaagaacagttaagactattcccggtttacgcgtaccggacccataac  1072500                             <------NtERF2                            ------>NtERF2                            <---------RAP2.6(3)                           --------->RAP2.3(2)                           --------->RAP2.3(3)                           --------->RAP2.6(2)                           --------->DEAR3(1)                          --------->DEAR4(2)               --------->ARR14(2)                          <------NtERF2                    --------->GLK1(2)                          --------->ATERF1(1)              <---------ARR14(2)                          --------->ERF1                  <---------ARR14(2)                          --------->ORA47(2)              <---------GLK1(2)                          --------->RAP2.3(1)             --------->ARR14(2)                          --------->DEAR3(2)             <------NtERF2                         <---------ATERF1(1)           <---------ANAC46                         --------->At4g35610          <---------LBD16                        --------->ARR14(2)      <------ZmHOX2a(2)                          <---------ZAT6 ---->ZAT6              <---------ARR14(2)     --------->ARR14(2)              --------->HSFB2a(2) <- -->MYB52(1)       ---------->DOF2             <---------ARR14(2)              <---------HSFB2a(2) --   agtataagtgaatttggataagaaaggagccgcctagagagaagaaggcgatccatggcggaatctgtcttctcttgtataccagaagacgtagtcttca  1072600                                                             --------->ARR14(2)                                                            ------>MYB83                                                            ------>MYB46(1)                                                         --------->ANAC58                                                         --------->ANAC58                                                        ----------->RAV1(1)                                                      --------->ZAT18                                                      --------->At4g35610                                                      <---------ZAT14                    ----------->GT1                             --------->GLK1(2)   <---------ANAC58                      <-------GAMYB                          --------->ANAC58       <---------ANAC58   ------>ZmHOX2a(1) <---------MYB46(3)                          --------->ANAC46       <---------ANAC46  --------->TOE2(3)  --------->MYB55(2) --------ARR11(3)         --------->ANAC58   <---------ANAC58<---------ARR14(2)       --------->MYB52(2) ------->ARR11(3)      ------>ZmHOX2a(2)     <---------ANAC58<---------GLK1(2)      <---------MYB52(1)   acatcttcttcaagctccaagatgatccaagaaactgggctcgtctcgcttgcgtctgcaccaaattctcctcaattgttcgaaacgtttgttgtaaaac  1072700                                                               --------->ARR14(2)                                                               <---------ARR14(2)                                                             ------>NtERF2                                                             <---------ATERF1(1)                                                             <------NtERF2                                                            --------->RRTF1(2)                                                            --------->RAP2.6(2)                                                            --------->RAP2.3(2)                                                            --------->DEAR3(1)                                                           --------->RRTF1(1)                                                           --------->DEAR4(2)                                                           --------->ATERF1(1)                                                           <------NtERF2                                                           --------->RAP2.3(1)                                                          ------>NtERF2                                                          --------->ABI4(1)                                                          <---------ATERF1(1)                                                         <---------ATERF1(2)                                                         <---------ALFIN1                                                         <---------DEAR3(1)                                                         --------->ATERF1(2)                                                         --------->ANAC46                                                         --------->DEAR3(1)                                                         --------->RRTF1(2)                                                         --------->RRTF1(3)                                                         --------->RAP2.6(2)                                                         --------->RAP2.3(3)                                                         --------->RAP2.3(2)                                                        --------->ATERF1(1)                                                        --------->ERF1                        <------                                                        --------->RAP2.3(1)                <-------TEIL                                                        --------->RAP2.6(1)              <---------GLK1(2)                                 <------ZmHOX2a(2)      --------->RRTF1(1)               --------->ARR14(2)                                 <---------GLK1(1)      --------->DEAR4(2)               <---------ARR14(2)                          --------->At4g35610           --------->ORA47(2)              <------NtERF2                          <---------At4g35610          --------->At4g35610            <---------ANAC46                       <---------MYB52(1)              ------>NtERF2                 ------>NtERF2                      <-----------HVH21                <---------ATERF1(1)           <------NtERF2                      <-----------TGA1                 --------->ABI4(1)             <---------LBD16                     --------->DEAR3(1)                <---------At4g35610          ------>NtERF2                     --------->DREB2C(2)        ------>ZmHOX2a(1)                   <---------ATERF1(1)                   ------>NtERF2 --------->GLK1(1)    --------->DEAR3(1)           <---------DEAR3(1)                  <---------ALFIN1------>ZmHOX2a(2)   --------->ANAC46            --------->LBD16                  --------->ANAC46=====================HOX2a_HOX2a                <---------LBD16                 --------->MYB46(3)   ------>ZmHOX2a(1)--------->LBD16           --------->DEAR3(1)           <---------MYB52(1)    ======================HOX2a_HOX2a             <---------At5g28300          --------->At4g35610   <---------ARR14(2)    <---------ALFIN1        <---------ALFIN1-------          <---------At4g35610   --------->ARR14(2)   --------->SPL7          --------->MYB46(3)   tcagtgctactccgctatccccaccgtcatctccgatctcctccctcttcctccctccgccgccgcatccgcttcttcatccaccgcggcggattcgtct  1072800                <------MYB83                <------MYB46(1)              <--------P             <-------GAMYB            --------->MYB52(2)            --------->MYB111(2)            <---------MYB46(3)            --------->MYB55(2)           --------->ALFIN1                                                 --------->LBD16          <---------MYB52(1)                      ------>ZmHOX2a(1)         ------>ZmHOX2a(1)         --------->LBD16                   <-------GAMYB                    <---------HSFB2a(2)       <---------LBD16                    <---------MYB46(3)         <---------GLK1(1)     ------>ZmHOX2a(1)     <-----------GT1--------->MYB52(2)         --------->GLK1(1) ---CCA1(2)<---------AtMYB61            <---------MYB52(1)    --------->ANAC46 --->ID1--------->LBD16<----------DOF2<----------DOF2       <---------ALFIN1--------->HSFB2a(2)   cttactcctcccggtggttgggcttctttatacaaactcgctgtttgttgtcctggtctcttccacgctggaattctcctcgaaaactccgatttcggtt  1072900                                                    <------ZmHOX2a(2)                                                   <---------AGP1                                         ------>MYB46(1)                                         ------>MYB83------>ZmHOX2a(2)                    --------->YAB1       -------->P<-----------ARR10                   <------ZmHOX2a(2)   --------->TOE2(2)                                   --------->ARR14(2)           <------MYB83                --------->TOE1(2) <---------ARR11(3)                --------->ARR11(3)           <------MYB46(1)       --------->ANAC46  --------->AGP1         <---------HSFC1(2)          --------->MYB59       ------>ZmHOX2a(2)  --------->ARR11(3)     <---------HSFB2a(1)       <---------At4g35610     <------ZmHOX2a(2)   ------->TEIL <----------ID1             <---------AGP1       --------->At4g35610    --------->ARR14(2)   <---------ARR14(2)     --------->HSFB2a(1)       --------->ZAT2         <---------ARR14(2)   --------->ARR14(2)     --------->HSFC1(2) ------>ZmHOX2a(2)       <---------ZAT2     --------->TOE2(3)    <---------LBD16--------->MYB52(1)           <---------ARR14(2)   tagaacgtgagctaggtcccgatcaaaacctcgatccgaaacctactacgacggatctagctcttaacgacgaagaagtttcgaaaccagttggatctgg  1073000  Previous    Next  AGI:  At4g02430.1    Description:  pre-mRNA splicing factor, putative / SR1 protein, putative. similar to SR1 (splicing factor 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G02840.2); similar to SR1 (splicing factor 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G02840.3); similar to SR1 (splicing factor 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G02840.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80749.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 1068974    to: 1072215    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g02440.1    Description:  EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1). Identical to Phytochrome A-associated F-box protein (EID1) [Arabidopsis Thaliana] (GB:Q8LEA8;GB:O81289;GB:Q0WMI9); similar to unnamed protein product [Vitis vinifera] (GB:CAO40005.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 1072481    to: 1073779    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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